View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17990_low_1 (Length: 1045)

Name: NF17990_low_1
Description: NF17990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17990_low_1
NF17990_low_1
[»] chr1 (4 HSPs)
chr1 (540-1027)||(14610551-14611038)
chr1 (1-485)||(14611093-14611577)
chr1 (540-1025)||(14597467-14597952)
chr1 (1-60)||(14596993-14597052)
[»] chr7 (2 HSPs)
chr7 (583-926)||(44634155-44634498)
chr7 (597-704)||(47919242-47919349)
[»] chr4 (2 HSPs)
chr4 (595-716)||(29917879-29918000)
chr4 (862-926)||(54383191-54383255)
[»] chr3 (1 HSPs)
chr3 (649-728)||(41490587-41490666)
[»] chr2 (1 HSPs)
chr2 (646-707)||(15418526-15418587)
[»] chr5 (1 HSPs)
chr5 (624-727)||(12193254-12193357)


Alignment Details
Target: chr1 (Bit Score: 488; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 540 - 1027
Target Start/End: Complemental strand, 14611038 - 14610551
Alignment:
Q  540 ccaatcacccgtgggagggtcaaatccgtacaatgcaaatctcctgaacatgcacccggttcccacataaaatggaccttggagaccatcaagggctctc 639  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14611038 ccaatcacccgtgggagggtcaaatccgtacaatgcaaatctcctgaacatgcacccggttcccacataaaatggaccttggagaccatcaagggctctc 14610939  T
Q  640 atgttcccgtcaaagaacacggtgttgtgattggcatagcgatctgagggatcaataccttcaaatctttgagggaactgaatatagcatatgtcttcgc 739  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14610938 atgttcccgtcaaagaacacggtgttgtgattggcatagcgatctgagggatcaataccttcaaatctttgagggaactgaatatagcatatgtcttcgc 14610839  T
Q  740 cacctttgtccatcatgaaacacattccttcttttactgccttgcaattatagatatagtgatcacaatcaagattgagaatgaatggcccatttgatag 839  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14610838 cacctttgtccatcatgaaacacattccttcttttactgccttgcaattatagatatagtgatcacaatcaagattgagaatgaatggcccatttgatag 14610739  T
Q  840 gactgcagatgctcgaacaagtgcattcatggcaccggctttcttgttatgatcataacctggcctcttctctcgagatacataaaccaacatcggcaaa 939  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14610738 gactgcagatgctcgaacaagtgcattcatggcaccggctttcttgttatgatcataacctggcctcttctctcgagatacataaaccaacatcggcaaa 14610639  T
Q  940 cgtgtatctacgtcactgaaatcaatgatgttgttgtttgcacttcgcgttaatggatcaggacttggaggctttagcatcacctact 1027  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14610638 cgtgtatctacgtcactgaaatcaatgatgttgttgtttgcacttcgcgttaatggatcaggacttggaggctttagcatcacctact 14610551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 1 - 485
Target Start/End: Complemental strand, 14611577 - 14611093
Alignment:
Q  1 ccataaatccatcccactctgtctccccattctgtcttctcttcgtacctacatgtaatatgatgtatctttaataagatctaataaaattatgtaactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14611577 ccataaatccatcccactctgtctccccattctgtcttctcttcgtacctacatgtaatatgatgtatctttaataagatctaataaaattatgtaactt 14611478  T
Q  101 tagataattaataaaataggaaagttagcaagaaatttatattgttttatttaaatgcattatgtatatgttctattttgtttaaacgtgggcgtgttgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14611477 tagataattaataaaataggaaagttagcaagaaatttatattgttttatttaaatgcattatgtatatgttctattttgtttaaacgtgggcgtgttgg 14611378  T
Q  201 gctagatacgcaccaacaagaaatcacagagacagcttcagctacagtactagcttcgagtgggtcacgaggagatgtcagcaaacctggttcgcgtcca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14611377 gctagatacgcaccaacaagaaatcacagagacagcttcagctacagtactagcttcgagtgggtcacgaggagatgtcagcaaacctggttcccgtcca 14611278  T
Q  301 tactttatggaaagatgatcggcaagagggcgaccgtggatctcagccacaggtatgctcttagccaactcgactgaattaccgaagcgtttaggaagca 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14611277 tactttatggaaagatgatcggcaagagggcgaccgtggatctcagccaaaggtatgctcttagccaactcgactgaattaccgaagcgtttaggaagca 14611178  T
Q  401 agtctacatctagataataatcaaactcactactccttttagtattcaattccattgttgtctcagaaacttcttcggcagaacg 485  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14611177 agtctacatctagataataatcaaactcactactccttttagtattcaattccattgttgtctcagaatcttcttcggcagaacg 14611093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 540 - 1025
Target Start/End: Original strand, 14597467 - 14597952
Alignment:
Q  540 ccaatcacccgtgggagggtcaaatccgtacaatgcaaatctcctgaacatgcacccggttcccacataaaatggaccttggagaccatcaagggctctc 639  Q
    ||||||||| | ||||||||||||||| ||||||||||| | ||| |||||||| |||||||||||||||||||||||||| |||||||| |||||||||    
T  14597467 ccaatcacctgagggagggtcaaatccatacaatgcaaaccgcctaaacatgcatccggttcccacataaaatggaccttgaagaccatcgagggctctc 14597566  T
Q  640 atgttcccgtcaaagaacacggtgttgtgattggcatagcgatctgagggatcaataccttcaaatctttgagggaactgaatatagcatatgtcttcgc 739  Q
    ||||| ||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  14597567 atgtttccgtcaaagaatacagtgttgtgattggcatagcgatccgagggatcaataccttcaaatctttgggggaactgaatatagcatatgtcttcgc 14597666  T
Q  740 cacctttgtccatcatgaaacacattccttcttttactgccttgcaattatagatatagtgatcacaatcaagattgagaatgaatggcccatttgatag 839  Q
    |||||||||||| |||||| ||||| |||||   ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |     
T  14597667 cacctttgtccagcatgaagcacataccttcacgtactgccttacaattatagatatagtgatcacaatcaagattgagaatgaatggtccatttgacaa 14597766  T
Q  840 gactgcagatgctcgaacaagtgcattcatggcaccggctttcttgttatgatcataacctggcctcttctctcgagatacataaaccaacatcggcaaa 939  Q
    || ||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  14597767 gattgcagatgctcgaactagtgcattcatggcaccagctttcttgttgtgatcataacctggcctcttctctcgagatacatatactaacatcggcaaa 14597866  T
Q  940 cgtgtatctacgtcactgaaatcaatgatgttgttgtttgcacttcgcgttaatggatcaggacttggaggctttagcatcaccta 1025  Q
    ||||||||||| |||  |||||| ||||| |||| || | |||||| | |||| |||||||| || || ||||| | |||||||||    
T  14597867 cgtgtatctacctcagagaaatctatgatcttgtcgtcttcacttcccattaacggatcagggctgggcggcttcaacatcaccta 14597952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 14596993 - 14597052
Alignment:
Q  1 ccataaatccatcccactctgtctccccattctgtcttctcttcgtacctacatgtaata 60  Q
    |||||||||||||||||||| ||||||||||||||||| ||||| |||||||||| ||||    
T  14596993 ccataaatccatcccactctttctccccattctgtcttgtcttcatacctacatgaaata 14597052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 2e-39; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 583 - 926
Target Start/End: Complemental strand, 44634498 - 44634155
Alignment:
Q  583 ctgaacatgcacccggttcccacataaaatggaccttggagaccatcaagggctctcatgttcccgtcaaagaacacggtgttgtgattggcatagcgat 682  Q
    ||||| ||||| || ||||| ||||| | ||||||||| | ||||||||| ||||||||| || | |||||||||||||||||||| || ||||| ||||    
T  44634498 ctgaatatgcagccagttccaacatacattggaccttgtaaaccatcaagagctctcatgctcacatcaaagaacacggtgttgtggtttgcatatcgat 44634399  T
Q  683 ctgagggatcaataccttcaaatctttgagggaactgaatatagcatatgtcttcgccacctttgtccatcatgaaacacattccttcttttactgcctt 782  Q
    |   ||| |||||||||||||| ||||||||||| |||| ||| |||||    || |||||| |||| | ||| || ||||| |||||  | |  |||      
T  44634398 cactggggtcaataccttcaaacctttgagggaattgaacataacatatcctgtcaccacctctgtcaagcataaagcacataccttccctcaaggccaa 44634299  T
Q  783 gcaattatagatatagtgatcacaatcaagattgagaatgaatggcccatttgataggactgcagatgctcgaacaagtgcattcatggcaccggctttc 882  Q
    | | || ||||| || |||||||| ||||||||||||| |||||| ||||| || | ||| |||   | ||||||||| ||||||||||| || ||||||    
T  44634298 ggagttgtagatgtaatgatcacagtcaagattgagaacgaatggtccattggacatgacagcactagttcgaacaagagcattcatggcgccagctttc 44634199  T
Q  883 ttgttatgatcataacctggcctcttctctcgagatacataaac 926  Q
    ||||| |||||||| || ||||||||||| ||||| ||||||||    
T  44634198 ttgttgtgatcatatcccggcctcttctcacgagacacataaac 44634155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 597 - 704
Target Start/End: Complemental strand, 47919349 - 47919242
Alignment:
Q  597 ggttcccacataaaatggaccttggagaccatcaagggctctcatgttcccgtcaaagaacacggtgttgtgattggcatagcgatctgagggatcaata 696  Q
    |||||| ||||| || || ||||| || ||||||||||||||||||||  | |||||||| || ||||||||||| ||||| | ||| ||||||||||||    
T  47919349 ggttcctacatagaacgggccttgaagtccatcaagggctctcatgttaacatcaaagaagacagtgttgtgattagcatatctatcagagggatcaata 47919250  T
Q  697 ccttcaaa 704  Q
    || |||||    
T  47919249 ccctcaaa 47919242  T

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Target: chr4 (Bit Score: 58; Significance: 7e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 595 - 716
Target Start/End: Original strand, 29917879 - 29918000
Alignment:
Q  595 ccggttcccacataaaatggaccttggagaccatcaagggctctcatgttcccgtcaaagaacacggtgttgtgattggcatagcgatctgagggatcaa 694  Q
    |||||||| ||||| | ||| ||||| || ||||||||||||||||||||  | |||||||| |||||||||||||| ||||| | ||| ||||||||||    
T  29917879 ccggttcctacatagactgggccttgaagtccatcaagggctctcatgttaacatcaaagaagacggtgttgtgattagcatatctatcagagggatcaa 29917978  T
Q  695 taccttcaaatctttgagggaa 716  Q
    |||| ||||| |||||||||||    
T  29917979 taccctcaaacctttgagggaa 29918000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 862 - 926
Target Start/End: Original strand, 54383191 - 54383255
Alignment:
Q  862 gcattcatggcaccggctttcttgttatgatcataacctggcctcttctctcgagatacataaac 926  Q
    |||||||||||||||||||||||||  || | | | |||||||| ||||||| ||||||||||||    
T  54383191 gcattcatggcaccggctttcttgtggtgttgaaatcctggccttttctctctagatacataaac 54383255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 649 - 728
Target Start/End: Original strand, 41490587 - 41490666
Alignment:
Q  649 tcaaagaacacggtgttgtgattggcatagcgatctgagggatcaataccttcaaatctttgagggaactgaatatagca 728  Q
    |||||||| || ||||||||||||||||| |||||||| || ||||| |||||||||||||| || || |||| ||||||    
T  41490587 tcaaagaagacagtgttgtgattggcataccgatctgatgggtcaattccttcaaatctttggggaaattgaacatagca 41490666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 646 - 707
Target Start/End: Original strand, 15418526 - 15418587
Alignment:
Q  646 ccgtcaaagaacacggtgttgtgattggcatagcgatctgagggatcaataccttcaaatct 707  Q
    ||||||||||| || ||||| ||||| ||||| ||||| ||||||||||| |||||||||||    
T  15418526 ccgtcaaagaagactgtgttatgatttgcatatcgatccgagggatcaatcccttcaaatct 15418587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 624 - 727
Target Start/End: Original strand, 12193254 - 12193357
Alignment:
Q  624 accatcaagggctctcatgttcccgtcaaagaacacggtgttgtgattggcatagcgatctgagggatcaataccttcaaatctttgagggaactgaata 723  Q
    |||||| || |||||||| ||  | |||||||| || ||||| ||||||||||| |||||||| || || || |||||||| |||||||| || |||| |    
T  12193254 accatcgagagctctcatattgacatcaaagaagacagtgttatgattggcataccgatctgatgggtcgattccttcaaacctttgaggaaattgaaca 12193353  T
Q  724 tagc 727  Q
    ||||    
T  12193354 tagc 12193357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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