View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17990_low_10 (Length: 531)
Name: NF17990_low_10
Description: NF17990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17990_low_10 |
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| [»] scaffold0016 (1 HSPs) |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 175 - 515
Target Start/End: Complemental strand, 26544360 - 26544020
Alignment:
| Q |
175 |
aaaatcctttatattgcggacacaattttggttgtggaccacggtttaaaaccatgggatccattttctaccattttttattgcggttgtagtgtaactg |
274 |
Q |
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| T |
26544360 |
aaaatcctttatactgcggacacaattttggctgtggaccacggtttaaaaccatgggatccattttctaccattttttattgcggttgtagtgtaactg |
26544261 |
T |
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| Q |
275 |
tgatccttcgtactatggaaaaattaagacaactatagctgatgtggctgcaattgcagtctcggtgtagttgctgaggcttcaaaatcttttatgttgt |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26544260 |
tgatccttcgtactatggaaaaattaagacaactatagctgatgtggctgcaattgcagtctcggtgtagttgccgaggcttcaaaatcttttatgttgt |
26544161 |
T |
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| Q |
375 |
gacggcaattgctgttgcagcaatttaaaaaattatttaaacctttatggtcttgaccaacatgaccccaagactttgtccgcgtatgttttttgtgcgc |
474 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
26544160 |
gacggcaattgctgttgcagcaatttaaaaaattatttaaacctttatggtcttgaccaacatgaccccaagactttgtccgcgtatgttttttgtgcac |
26544061 |
T |
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| Q |
475 |
cttgcactcattagtcgtgaataatattttgctgattcaaa |
515 |
Q |
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| T |
26544060 |
cttgcactcattagtcgtgaataatattttgctgattcaaa |
26544020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 16 - 177
Target Start/End: Complemental strand, 26544551 - 26544391
Alignment:
| Q |
16 |
gagggttaagaaggccaaacctggtgttgtgtctgctgttcttacatcaaatgatgccactgagactaaggtaagctaaatcatgtcgagggatccgtca |
115 |
Q |
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| T |
26544551 |
gagggttaagaaggccaaacctggtgttgtgtctgctgttcttacatcaaatgatgccactgagactaaggtaagctaaatcatgtcgagggatccgtca |
26544452 |
T |
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| Q |
116 |
tggttttgaattacattgcgaacttttgtattgtcaaaaaatcttggaaaatatgttcaaaa |
177 |
Q |
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| T |
26544451 |
tggttttcaattacattgcgaacttttgtattgtca-aaaatcttggaaaatatggtcaaaa |
26544391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 502
Target Start/End: Complemental strand, 47620332 - 47620280
Alignment:
| Q |
450 |
ttgtccgcgtatgttttttgtgcgccttgcactcattagtcgtgaataatatt |
502 |
Q |
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| T |
47620332 |
ttgtccgcgaatgtcttttgtgcgccttgcactcattcgaagtgaataatatt |
47620280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 43103 - 42990
Alignment:
| Q |
16 |
gagggttaagaaggccaaacctggtgttgtgtctgctgttcttacatcaaatgatgccactgagactaaggtaagctaaatcatgtcgagggatccgtca |
115 |
Q |
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||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||| | ||||| |||| |
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| T |
43103 |
gagggttaagaaggccaaatatggtgttgtctctgctgttcttacatcaaatgatgccactgagactaagataagctgaatcatgtttacggatctgtca |
43004 |
T |
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| Q |
116 |
tggttttgaattac |
129 |
Q |
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|| ||||||||||| |
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| T |
43003 |
tgcttttgaattac |
42990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 42 - 128
Target Start/End: Complemental strand, 25283956 - 25283870
Alignment:
| Q |
42 |
ttgtgtctgctgttcttacatcaaatgatgccactgagactaaggtaagctaaatcatgtcgagggatccgtcatggttttgaatta |
128 |
Q |
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| T |
25283956 |
ttgtgtctgctattcttacatcaaatgttgccgctgagattaaggtaagtttaatcatgtttagggatccgtcatggttttgaatta |
25283870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 448 - 502
Target Start/End: Complemental strand, 31198742 - 31198688
Alignment:
| Q |
448 |
ctttgtccgcgtatgttttttgtgcgccttgcactcattagtcgtgaataatatt |
502 |
Q |
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||||||| ||| ||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
31198742 |
ctttgtctgcgaatgttttttgtgcgccttgcactcattcgtcgtaaataatatt |
31198688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 82 - 128
Target Start/End: Original strand, 3149 - 3195
Alignment:
| Q |
82 |
taaggtaagctaaatcatgtcgagggatccgtcatggttttgaatta |
128 |
Q |
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| T |
3149 |
taaggtaagcttaaccatgtttagggatccgtcatggttttgaatta |
3195 |
T |
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