View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17990_low_12 (Length: 499)
Name: NF17990_low_12
Description: NF17990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17990_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 20 - 488
Target Start/End: Complemental strand, 51389496 - 51389027
Alignment:
| Q |
20 |
ttatggatttgcatttgcgagaatttaagcccctggtttgggnnnnnnnn-gctgactatttttcatggattatgtgattagcggaggttaaacctgaaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
51389496 |
ttatggatttgcatttgcgagaatttaagcccctggtttgggtttttttttgctgactatttttcatggattatgtgattaacggaggttaaacctgaaa |
51389397 |
T |
|
| Q |
119 |
gaagaatgacaagtcctgatacattactttccatctcttccttgactttagacgttcgtgaatgtgattgttacttgattatattgttataaatcttagg |
218 |
Q |
| |
|
| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51389396 |
ggagaatgacaagtcctgatacattactttccttctcttccttgactttagatgttcgtgaatgtgattgttacttgattatattgttataaatcttagg |
51389297 |
T |
|
| Q |
219 |
catttaaaattgaaattatgtaggtcagtatagaatcatcccaaagttagtctaacacaggtgttgttgtctttttatattttctgcatagttagttata |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
51389296 |
catttaaaattgaaattatgtaggtcagtatagaatcatcccaaagttagtctaacacaagtgttgttgtctttttatattttctgcatagttagttata |
51389197 |
T |
|
| Q |
319 |
ttggttttggacagtttaggttctttacatacaagtttttggtattttaaactcccatgtatctttaaaaacttgaatccttaacaaatgatatatcttc |
418 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
51389196 |
ttggttttggacagtttaggttctttgcatacaagtttttggtattttaaactcccatgtatctttaaaaacttgaatccttaacaaataatatatcttt |
51389097 |
T |
|
| Q |
419 |
atacatttatagttagttaccctttcttttgtgcatcgttaaaatgttccaaggactcataccatatatt |
488 |
Q |
| |
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| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51389096 |
agacatttataattagttaccctttcttttgtgcatcgttaaaatgttccaaggactcataccatatatt |
51389027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 299
Target Start/End: Original strand, 770559 - 770838
Alignment:
| Q |
20 |
ttatggatttgcatttgcgagaatttaagcccctggtttgggnnnnnnnngctgactatttttcatggattatgtgattagcggaggttaaacctgaaag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||| |||| |||||||| |
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| T |
770559 |
ttatggatttgcatttgcgagaatttaagcccctggtttgggtttttt--gctgactatttttcctggattatgtgattaacggagcttaaccctgaaag |
770656 |
T |
|
| Q |
120 |
aagaatgacaag-tcctgatacattactttccatctcttccttgactttagacgttcgtgaatgtgattgttacttgattatattgttataaatcttagg |
218 |
Q |
| |
|
|||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
770657 |
gagaatggcaaggtcctgatacattactttccttctcttccttgactttagacgttcgtgaatgtgattgttacttgattatattgctataaatcttagg |
770756 |
T |
|
| Q |
219 |
catttaaaattgaaattatgtaggtcagtatagaatcat-cccaaagttagtctaacacaggtgttgttgtctttttatatt |
299 |
Q |
| |
|
||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
770757 |
catataaaattgaaattatgtaggtctatatagaatcatccccaaagttagtctaacacaagtgttgttgtctttttatatt |
770838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 135; Significance: 4e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 20 - 277
Target Start/End: Complemental strand, 8028333 - 8028078
Alignment:
| Q |
20 |
ttatggatttgcatttgcgagaatttaagcccctggtttgggnnnnnnnngctgactatttttcatggattatgtgattagcggaggttaaacctgaaag |
119 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||||| |||||||||||| | ||||||||||||||| |||||||||||||||||| |
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|
| T |
8028333 |
ttatggattttcatttgcgaggatttaagcccctggtttgggttgttt--gctgactattttcc-tggattatgtgattaatggaggttaaacctgaaag |
8028237 |
T |
|
| Q |
120 |
aagaatgacaag-tcctgatacattactttccatctcttccttgactttagacgttcgtgaatgtgattgttacttgattatattgttataaatcttagg |
218 |
Q |
| |
|
|||||| |||| ||||||||||||||||||| ||||||| ||||||||| |||||||||||| ||||||||||||||||||||| |||||||||| || |
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|
| T |
8028236 |
gagaatggcaaggtcctgatacattactttccttctcttcattgactttatacgttcgtgaatttgattgttacttgattatatttctataaatcttggg |
8028137 |
T |
|
| Q |
219 |
catttaaaattgaaattatgtaggtcagtatagaatcatcc-caaagttagtctaacaca |
277 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||| |
|
|
| T |
8028136 |
tatttaaaattgaaattatgtaggtta-tatagaatcatccgcaaagttagtctaacaca |
8028078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 132 - 237
Target Start/End: Original strand, 32663259 - 32663364
Alignment:
| Q |
132 |
tcctgatacattactttccatctcttccttgactttagacgttcgtgaatgtgattgttacttgattatattgttataaatcttaggcatttaaaattga |
231 |
Q |
| |
|
||||||||||||| ||| | | |||||||| | |||| || ||||||||||| |||||||||||| ||| || ||||||||||||||| ||||||||||| |
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|
| T |
32663259 |
tcctgatacattagtttgcttttcttcctttaatttataccttcgtgaatgttattgttacttgaatatttttttataaatcttaggcgtttaaaattga |
32663358 |
T |
|
| Q |
232 |
aattat |
237 |
Q |
| |
|
|||||| |
|
|
| T |
32663359 |
aattat |
32663364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 185 - 296
Target Start/End: Original strand, 4351817 - 4351929
Alignment:
| Q |
185 |
attgttacttgattatattgttataaatcttaggcatttaaaattgaaattatgtaggtcagtatagaatcat-cccaaagttagtctaacacaggtgtt |
283 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| | || |
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|
| T |
4351817 |
attgttactttattacattgttataaatcttagacatttaaaattgaaattatgcaggtctttatagaatcatccccaaagttagtctaacacaattatt |
4351916 |
T |
|
| Q |
284 |
gttgtctttttat |
296 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4351917 |
tttgtctttttat |
4351929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 185 - 277
Target Start/End: Complemental strand, 12572283 - 12572187
Alignment:
| Q |
185 |
attgttacttgattatattgttataaatcttaggcatttaaaattgaaattatgtag---gtcagtatagaatcat-cccaaagttagtctaacaca |
277 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||| ||||||||||| |||||||| || || ||||||||||| |||||||||||||||||||| |
|
|
| T |
12572283 |
attgttactttattacattgttataaatcttagacatttaaaattaaaattatgcagagaatctttatagaatcatccccaaagttagtctaacaca |
12572187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 185 - 277
Target Start/End: Complemental strand, 13548747 - 13548651
Alignment:
| Q |
185 |
attgttacttgattatattgttataaatcttaggcatttaaaattgaaattatgtag---gtcagtatagaatcat-cccaaagttagtctaacaca |
277 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||| ||||||||||| |||||||| || || ||||||||||| |||||||||||||||||||| |
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|
| T |
13548747 |
attgttactttattacattgttataaatcttagacatttaaaattaaaattatgcagagaatctttatagaatcatccccaaagttagtctaacaca |
13548651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 335 - 448
Target Start/End: Complemental strand, 12572052 - 12571942
Alignment:
| Q |
335 |
taggttctttacatacaagtttttggtattttaaactcccatgtatctttaaaaacttgaatccttaacaaatgatatatcttcatacatttatagttag |
434 |
Q |
| |
|
|||||||||| | ||||| ||||||||||||||| || |||| |||||||||| ||||| |||||||||||||||||||| ||| || || ||||| |
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|
| T |
12572052 |
taggttctttgtagacaagcttttggtattttaaattca-atgtgtctttaaaaa-ttgaactcttaacaaatgatatatctttatatgttcatggttag |
12571955 |
T |
|
| Q |
435 |
ttaccctttctttt |
448 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
12571954 |
tta-cctttctttt |
12571942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 335 - 448
Target Start/End: Complemental strand, 13548516 - 13548406
Alignment:
| Q |
335 |
taggttctttacatacaagtttttggtattttaaactcccatgtatctttaaaaacttgaatccttaacaaatgatatatcttcatacatttatagttag |
434 |
Q |
| |
|
|||||||||| | ||||| ||||||||||||||| || |||| |||||||||| ||||| |||||||||||||||||||| ||| || || ||||| |
|
|
| T |
13548516 |
taggttctttgtagacaagcttttggtattttaaattca-atgtgtctttaaaaa-ttgaactcttaacaaatgatatatctttatatgttcatggttag |
13548419 |
T |
|
| Q |
435 |
ttaccctttctttt |
448 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
13548418 |
tta-cctttctttt |
13548406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 335 - 448
Target Start/End: Original strand, 4293442 - 4293552
Alignment:
| Q |
335 |
taggttctttacatacaagtttttggtattttaaactcccatgtatctttaaaaacttgaatccttaacaaatgatatatcttcatacatttatagttag |
434 |
Q |
| |
|
|||||||||| || ||||| ||||||||||||||| | | |||| |||||||||| ||||| |||||||||||||||||||| ||| || || ||||| |
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|
| T |
4293442 |
taggttctttgcagacaagcttttggtattttaaa-ttcaatgtgtctttaaaaa-ttgaactcttaacaaatgatatatctttatatgttcatggttag |
4293539 |
T |
|
| Q |
435 |
ttaccctttctttt |
448 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
4293540 |
tta-cctttctttt |
4293552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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