View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17990_low_13 (Length: 492)
Name: NF17990_low_13
Description: NF17990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17990_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 427; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 18 - 476
Target Start/End: Complemental strand, 12844201 - 12843743
Alignment:
| Q |
18 |
atctaggtcgtggcagatatgaaaactttcgcacttaccatgtctacattcatgaaagccaaatcaacttcgaagtcaccgttaccgccactgcttccgt |
117 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
12844201 |
atctaggtcgtggcagatatgaaaaccttcgcacttaccatgtctacattcatgaaagccaaatcaacttcgaagtcaccgttaccgccacagcttccgt |
12844102 |
T |
|
| Q |
118 |
cgtaacaaactggctccaaagtatgctcaatcatcattttcaatccctccgccaccttcaataccttcgccgcaaccgtaatctccgtaaccgtaatctc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
12844101 |
cgtaacaaactggctccaaagtatgctcaatcatcattttcaatccctccgccaccttcaataccttcgccgcaaccgtaatctctgtaaccgtaatctc |
12844002 |
T |
|
| Q |
218 |
gttgtcggccttggcgttcaatggactcccggcaaccttgatcctcccgccgacacgctacagttatgcatcagtggcagctgtcttatcttccacctct |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12844001 |
attgtcggccttggcgttcaatggactcccggcaaccttgatcctcccgccgacacgctacagttatgcatcagtggcagctgtcttatcttccacctct |
12843902 |
T |
|
| Q |
318 |
ctcgcgcagatatgattccggtcagtctctgcaattttctccgtcatcctaagaacaccttcgttggattctggaacgctgctgatcgtagaaggctgga |
417 |
Q |
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||| ||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12843901 |
ctctcgccgatatgattccggttagtctctgcaactttctccgtcatcctaagaacaccttcgttggattctggaacgctgctgatcgtagaaggctgga |
12843802 |
T |
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| Q |
418 |
gagatttgatcatcgcttgcaaatgtggaaagatcctcaggatctgaggcattacaggt |
476 |
Q |
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| T |
12843801 |
gagatttgatcatcgcttgcaaatgtggaaagatcctcaggatctgaggcattacaggt |
12843743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 200 - 472
Target Start/End: Original strand, 12861462 - 12861734
Alignment:
| Q |
200 |
ctccgtaaccgtaatctcgttgtcggccttggcgttcaatggactcccggcaaccttgatcctcccgccgacacgctacagttatgcatcagtggcagct |
299 |
Q |
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||||| ||| ||||||| ||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
12861462 |
ctccgcaactgtaatcttgttgtcggcctcggcgttcaatggactaaccgcaaccttgatcctcccgccgacacgctacagttatgcatcggtggcagct |
12861561 |
T |
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| Q |
300 |
gtcttatcttccacctctctcgcgcagatatgattccggtcagtctctgcaattttctccgtcatcctaagaacaccttcgttggattctggaacgctgc |
399 |
Q |
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| T |
12861562 |
gtcttatcttccacctctctcgcgcagatatgattccggtcagtctctgcaattttctccgtcatcctaagaacaccttcgttggattctggaacgctgc |
12861661 |
T |
|
| Q |
400 |
tgatcgtagaaggctggagagatttgatcatcgcttgcaaatgtggaaagatcctcaggatctgaggcattac |
472 |
Q |
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| T |
12861662 |
agatcgtaggaagctggagagatttgatcatcgcttgcaaatgtggaaaaatcctcaggatttgaggaattac |
12861734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 12861316 - 12861467
Alignment:
| Q |
18 |
atctaggtcgtggcagatatgaaaactttcgcacttaccatgtctacattcatgaaagccaaatcaacttcgaagtcaccgttaccgccactgcttccgt |
117 |
Q |
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|||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12861316 |
atctaggtcgtgacagatatgaaaaccttcgcacttaccatgtctacattcacgaaagccaaatcaacttcgaagtcaccgttaccgccactgcttccgt |
12861415 |
T |
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| Q |
118 |
cgtaacaaactggctccaaagtatgctcaatcatcattttcaatccctccgc |
169 |
Q |
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|||||||||||||||| | ||||||| ||||||| |||||| ||||||| |
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| T |
12861416 |
tgtaacaaactggctccgtactatgctcgatcatcaccttcaatacctccgc |
12861467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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