View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17990_low_14 (Length: 477)
Name: NF17990_low_14
Description: NF17990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17990_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 439; Significance: 0; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 18 - 460
Target Start/End: Complemental strand, 40598709 - 40598267
Alignment:
| Q |
18 |
aagaataggctgatttcaaatcgagatcttgtgcgcgtaaaagttgaagcaactgatcacaaaactgaaaaggtcaacgatgctgtgtttgagtggctaa |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40598709 |
aagaataggctgatttcaaatcgagatcttgtgcgcgtaaaagttgaagcaactgatcacaaaactgaaaaggtcaacgatgctgtgtttgagtggctaa |
40598610 |
T |
|
| Q |
118 |
aagaaacagatatactcatgcaagaggttgaaaatctgacactacaatcaagaaaacgacaatggaatgaatttaggaaattgctgagaaaaataactgc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40598609 |
aagaaacagatatactcatgcaagaggttgaaaatctgacactacaatcaagaaaacgacaatggaatgaatttaggaaattgctgagaaaaataactgc |
40598510 |
T |
|
| Q |
218 |
gttgaatgtaaaatgcgaatttgatccattttcaactccaattccaagtttagagcacttctcttcaggaaatattttgtgttttaagtctagagataag |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40598509 |
gttgaatgtaaaatgcgaatttgatccattttcaactccaattccaagtttagagcacttctcttcaggaaatattttgtgttttaagtctagagataag |
40598410 |
T |
|
| Q |
318 |
acttcagatcaaattttagaggcactgcgagatgataattgctctatgattggattgtatggtagcaagggctctggtaagacagcgttggcaaaagcaa |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40598409 |
acttcagatcaaattttagaggcactgcgagatgataattgctctatgattggattgtatggtagcaagggctctggtaagacagcgttggcaaaagcaa |
40598310 |
T |
|
| Q |
418 |
tgggtgagaaagttaagtatctaaagatttttcatgaggtttt |
460 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
40598309 |
tgggtgagaaagttaagcatctaaagatttttcatgaggtttt |
40598267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 228 - 454
Target Start/End: Original strand, 40277089 - 40277315
Alignment:
| Q |
228 |
aaatgcgaatttgatccattttcaactccaattccaagtttagagcacttctcttcaggaaatattttgtgttttaagtctagagataagacttcagatc |
327 |
Q |
| |
|
||||| |||||||| ||||||||||||| ||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
40277089 |
aaatgtgaatttgacccattttcaactcgaattccaagtttagagcacttttctaatggaaatattatgtgttttaagtctagagaggagacttcagatc |
40277188 |
T |
|
| Q |
328 |
aaattttagaggcactgcgagatgataattgctctatgattggattgtatggtagcaagggctctggtaagacagcgttggcaaaagcaatgggtgagaa |
427 |
Q |
| |
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|| ||||||||||| | |||||| |||| ||||||||||| |||||||||| |||| |||||||| ||||| |||| ||||||||||||||||| |
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| T |
40277189 |
aacttttagaggcattcaaggatgatgattgttctatgattggcttgtatggtaagcagggatctggtaaaacagcattggtgaaagcaatgggtgagaa |
40277288 |
T |
|
| Q |
428 |
agttaagtatctaaagatttttcatga |
454 |
Q |
| |
|
||| |||||| |||| ||||||||||| |
|
|
| T |
40277289 |
agtcaagtatttaaatatttttcatga |
40277315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 30 - 382
Target Start/End: Original strand, 40333000 - 40333355
Alignment:
| Q |
30 |
atttcaaatcgagatcttgtgcgcgtaaaagttgaagcaactgatcacaaaactgaaaaggtcaacgatgctgtgtttgagtggctaaaagaaacagata |
129 |
Q |
| |
|
||||||||||| |||| |||||| | |||||||||||||| ||||| |||||||||||||| | |||| |||||||||||||||||||||| |||| | |
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|
| T |
40333000 |
atttcaaatcgtgatcgtgtgcgtgcaaaagttgaagcaattgatcgtaaaactgaaaaggttagagatgttgtgtttgagtggctaaaagaagcagaca |
40333099 |
T |
|
| Q |
130 |
tactcatgcaagaggttgaaaatctgacactacaatcaagaaaacgacaatggaatgaatttaggaaattgctgagaaaaataactgcgttgaatgtaaa |
229 |
Q |
| |
|
|| |||||||| | | || ||||| | | ||||||||| | || | ||||| |||||||| || |||| | |||||| || || | ||| || |
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|
| T |
40333100 |
taatcatgcaaaaaatggagaatcttaaattacaatcaaaaccaccatcatggattgaatttaataagttgcaggaaaaaattacagcactaaataagaa |
40333199 |
T |
|
| Q |
230 |
atgcgaatttgatccattttcaactccaattccaagtttagagcacttctcttcaggaaatatttt---gtgttttaagtctagagataagacttcagat |
326 |
Q |
| |
|
||| | |||||||||||||||||| |||||||||||||||| |||||||||| |||||||| ||| |||||| ||||| | || ||| |||||||| |
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|
| T |
40333200 |
atgtaattttgatccattttcaactacaattccaagtttagaacacttctctttaggaaataatttcgagtgtttcaagtcgacggagaaggcttcagat |
40333299 |
T |
|
| Q |
327 |
caaattttagaggcactgcgagatgataattgctctatgattggattgtatggtag |
382 |
Q |
| |
|
|| |||| |||||||||| |||||||||||| | |||||| |||||||| ||||| |
|
|
| T |
40333300 |
gaacttttggaggcactgcaagatgataattgttgtatgataggattgtacggtag |
40333355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 30 - 382
Target Start/End: Original strand, 40386278 - 40386633
Alignment:
| Q |
30 |
atttcaaatcgagatcttgtgcgcgtaaaagttgaagcaactgatcacaaaactgaaaaggtcaacgatgctgtgtttgagtggctaaaagaaacagata |
129 |
Q |
| |
|
||||||||||| |||| |||||| | | |||||||||||| ||| |||||||||||||| | |||| |||||||||||||||||||||| |||| | |
|
|
| T |
40386278 |
atttcaaatcgtgatcgtgtgcgtgcacaagttgaagcaattgacagtaaaactgaaaaggttagagatgttgtgtttgagtggctaaaagaagcagaaa |
40386377 |
T |
|
| Q |
130 |
tactcatgcaagaggttgaaaatctgacactacaatcaagaaaacgacaatggaatgaatttaggaaattgctgagaaaaataactgcgttgaatgtaaa |
229 |
Q |
| |
|
|| |||||||| | | || ||||| | | ||||||||| | || | ||||| |||||||| ||||||| | |||||| || || | ||| || |
|
|
| T |
40386378 |
tagtcatgcaaaaaatggagaatcttaaattacaatcaaaaccaccatcatggattgaatttaataaattgcaggaaaaaattacagcactaaataagaa |
40386477 |
T |
|
| Q |
230 |
atgcgaatttgatccattttcaactccaattccaagtttagagcacttctcttcaggaaatatttt---gtgttttaagtctagagataagacttcagat |
326 |
Q |
| |
|
||| | ||||| |||||||||||| |||||||||||||||| |||||||||| |||||||| ||| |||||| ||||| | || ||| |||||||| |
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|
| T |
40386478 |
atgtaattttgagccattttcaactacaattccaagtttagaacacttctctttaggaaataatttcgagtgtttcaagtcgacggagaaggcttcagat |
40386577 |
T |
|
| Q |
327 |
caaattttagaggcactgcgagatgataattgctctatgattggattgtatggtag |
382 |
Q |
| |
|
|| |||| |||||||||| |||||||||||| | |||||| |||||||| ||||| |
|
|
| T |
40386578 |
gaacttttggaggcactgcaagatgataattgttgtatgataggattgtacggtag |
40386633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 32 - 358
Target Start/End: Original strand, 40376035 - 40376364
Alignment:
| Q |
32 |
ttcaaatcgagatcttgtgcgcgtaaaagttgaagcaactgatcacaaaactgaaaaggtcaacgatgctgtgtttgagtggctaaaagaaacagatata |
131 |
Q |
| |
|
||||||||| |||| ||||| | |||||||||||||| ||||| |||||||||||||||| |||| ||||||||||||||||||| ||||||| ||| |
|
|
| T |
40376035 |
ttcaaatcgcgatcgtgtgcatgcaaaagttgaagcaattgatcctaaaactgaaaaggtcagagatgttgtgtttgagtggctaaaaaaaacagacata |
40376134 |
T |
|
| Q |
132 |
ctcatgcaagaggttgaaaatctgacactacaatcaagaaaacgacaatggaatgaatttaggaaattgctgagaaaaataactgcgttgaatgtaaaat |
231 |
Q |
| |
|
|||| ||||| || || ||||| || ||||||||| | || | ||||| |||||||| || |||| | ||| || | || | ||| |||| |
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|
| T |
40376135 |
atcatacaagaagtggagaatcttgcagtacaatcaaaaccaccatcatggattgaatttaataatttgcaggaaaacattaaagcactaaataagaaat |
40376234 |
T |
|
| Q |
232 |
gcgaatttgatccattttcaactccaattccaagtttagagcacttctcttcaggaaatatttt---gtgttttaagtctagagataagacttcagatca |
328 |
Q |
| |
|
| | |||||||||||||||| | ||||||||||||||| |||||||||| |||||||| ||| |||||| ||||| | ||| ||| |||||||| | |
|
|
| T |
40376235 |
gtaattttgatccattttcaattataattccaagtttagaacacttctctttaggaaataattttgagtgtttcaagtcgacagagaaggcttcagatga |
40376334 |
T |
|
| Q |
329 |
aattttagaggcactgcgagatgataattg |
358 |
Q |
| |
|
| |||| || ||||||| |||||||||||| |
|
|
| T |
40376335 |
acttttggaagcactgcaagatgataattg |
40376364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 168
Target Start/End: Original strand, 40283161 - 40283299
Alignment:
| Q |
30 |
atttcaaatcgagatcttgtgcgcgtaaaagttgaagcaactgatcacaaaactgaaaaggtcaacgatgctgtgtttgagtggctaaaagaaacagata |
129 |
Q |
| |
|
||||||||||| |||| || ||| | |||||||||||||| |||| |||||||||||||| | |||| ||||||||||||||||||||||||||| | |
|
|
| T |
40283161 |
atttcaaatcgtgatcgtgcgcgtgcaaaagttgaagcaattgattgtaaaactgaaaaggttagagatgttgtgtttgagtggctaaaagaaacagaca |
40283260 |
T |
|
| Q |
130 |
tactcatgcaagaggttgaaaatctgacactacaatcaa |
168 |
Q |
| |
|
| |||| ||||| | || ||||| ||| ||||||||| |
|
|
| T |
40283261 |
tgatcatacaagaaatggagaatcttacaatacaatcaa |
40283299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 319 - 449
Target Start/End: Complemental strand, 40257737 - 40257607
Alignment:
| Q |
319 |
cttcagatcaaattttagaggcactgcgagatgataattgctctatgattggattgtatggtagcaagggctctggtaagacagcgttggcaaaagcaat |
418 |
Q |
| |
|
|||| |||||| |||| |||||||||| ||| | |||||||| ||| |||||||| ||||| | |||||||||||||| ||| ||||| |||||| | |
|
|
| T |
40257737 |
cttcggatcaacttttggaggcactgcaagacggtaattgctatataattggattatatgggaagaagggctctggtaaaacaaagttggtgaaagcagt |
40257638 |
T |
|
| Q |
419 |
gggtgagaaagttaagtatctaaagattttt |
449 |
Q |
| |
|
|||||||||| |||||| ||||||||||| |
|
|
| T |
40257637 |
tggtgagaaagccaagtatttaaagattttt |
40257607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 343
Target Start/End: Original strand, 40310350 - 40310474
Alignment:
| Q |
219 |
ttgaatgtaaaatgcgaatttgatccattttcaactccaattccaagtttagagcacttctcttcaggaaatattttgtgttttaagtctagagataaga |
318 |
Q |
| |
|
|||||| | ||||| || ||||| ||||||| | |||||||||||||||||||||||||||||| |||||| || | |||||| || ||| | | ||| |
|
|
| T |
40310350 |
ttgaatatcaaatgtgagtttgagccatttttcaatccaattccaagtttagagcacttctcttctggaaattttgtatgttttgagcctataaaagaga |
40310449 |
T |
|
| Q |
319 |
cttcagatcaaattttagaggcact |
343 |
Q |
| |
|
|||||||| | |||| |||||||| |
|
|
| T |
40310450 |
cttcagatagacttttggaggcact |
40310474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 151
Target Start/End: Original strand, 40276846 - 40276970
Alignment:
| Q |
27 |
ctgatttcaaatcgagatcttgtgcgcgtaaaagttgaagcaactgatcacaaaactgaaaaggtcaacgatgctgtgtttgagtggctaaaagaaacag |
126 |
Q |
| |
|
|||||||||||||| |||| |||| | | |||| | |||||| |||||| | || ||| ||||| | ||||| |||| | |||||||||||||| ||| |
|
|
| T |
40276846 |
ctgatttcaaatcgtgatcgtgtgagtgcaaaatataaagcaattgatcatagaattgataaggtgagcgatgatgtgatcaagtggctaaaagaagcag |
40276945 |
T |
|
| Q |
127 |
atatactcatgcaagaggttgaaaa |
151 |
Q |
| |
|
| |||||||| |||||||| ||||| |
|
|
| T |
40276946 |
acatactcatacaagaggtagaaaa |
40276970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 123
Target Start/End: Original strand, 40302840 - 40302930
Alignment:
| Q |
30 |
atttcaaatcgagatcttgtgcgcgtaaaagttgaagcaactgatcacaaaactgaaaaggtcaacgatgctgtgtttgagtggctaaaagaaa |
123 |
Q |
| |
|
|||||||||||| |||||||||| | ||||| ||||||||||| | ||||||||||| ||||| || || | ||||||||||| ||||||| |
|
|
| T |
40302840 |
atttcaaatcgatatcttgtgcgggaaaaagctgaagcaactgct---aaaactgaaaaaatcaacaatactatttttgagtggcttaaagaaa |
40302930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 40310190 - 40310256
Alignment:
| Q |
56 |
aaaagttgaagcaactgatcacaaaactgaaaaggtcaacgatgctgtgtttgagtggctaaaagaa |
122 |
Q |
| |
|
|||| |||||||||| ||||| |||||| |||||||||| ||| ||| ||||||||||||||||| |
|
|
| T |
40310190 |
aaaaattgaagcaaccgatcataaaactcaaaaggtcaatgatattgttcttgagtggctaaaagaa |
40310256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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