View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17990_low_16 (Length: 460)
Name: NF17990_low_16
Description: NF17990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17990_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 18 - 448
Target Start/End: Complemental strand, 16077783 - 16077354
Alignment:
| Q |
18 |
tccttcaatctatccaacctaacctccaaaccttcatacaccttactccacctcgtaagatctcccttcaaccttttcaacttattttttaagcaccaca |
117 |
Q |
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| T |
16077783 |
tccttcaatctatccaacctaacctccaaaccttcatacaccttactccacctcgtaagatctcccttcaaccttttcaacttattttt-aagcaccaca |
16077685 |
T |
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| Q |
118 |
cccatccaccctctctctccttgagacctccaactatcctccaccacctttttgagcccccggtttccaacccaataattattaaaccgaaacggtttag |
217 |
Q |
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| T |
16077684 |
cccatccaccctctctccccttgagacctccaactatcctccaccacctttttgagcccccggtttccaacccaataattattaaaccgaaacggtttag |
16077585 |
T |
|
| Q |
218 |
gccccaatctaaaccacccgccttaagtaacaactgacaataatctgaaacgtctcttgggagcacccaaagggatgaggtaccccacgtggactcccaa |
317 |
Q |
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| T |
16077584 |
gccccaatctaaaccacccgccttaagtaacaactgacaatgatccgaaacgtctcttgggagcacccaaagggatgaggtaccccacgtggactcccaa |
16077485 |
T |
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| Q |
318 |
ttctctgacacaagcaccctatcaatcctactcatggccactccattggagttataccaagtaaacttccgaccaagaggattaatatcctccaagtcta |
417 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16077484 |
ttctttgacacaagcaccctatcaatcctactcatggccactccattggagttataccaagtaaacttccgaccaagaggattaatatcctccaagtcta |
16077385 |
T |
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| Q |
418 |
tctcctcnnnnnnnttattaaagaataatct |
448 |
Q |
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| T |
16077384 |
tctcctcaaaaaaattattaaagaataatct |
16077354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 361 - 424
Target Start/End: Complemental strand, 16077145 - 16077082
Alignment:
| Q |
361 |
cattggagttataccaagtaaacttccgaccaagaggattaatatcctccaagtctatctcctc |
424 |
Q |
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| T |
16077145 |
cattggagttataccaagtaaacttccgaccaaaaggattaatatcctctaagtctatctcctc |
16077082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 144 - 387
Target Start/End: Complemental strand, 55351005 - 55350762
Alignment:
| Q |
144 |
cctccaactatcctccaccacctttttgagcccccggtttccaacccaataattattaaaccgaaacggtttaggccccaatctaaaccacccgccttaa |
243 |
Q |
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||||||| | ||||||||||||||||||||| || || | ||||||||||||||| || || |||||||| ||||||| || |||| | ||| | |
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| T |
55351005 |
cctccaattctcctccaccacctttttgagcttgcgattaaggatccaataattattaaaacggaaaggtttagggcccaatcacaatcacctgacttga |
55350906 |
T |
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| Q |
244 |
gtaacaactgacaataatctgaaacgtctcttgggagcacccaaagggatgaggtaccccacgtggactcccaattctctgacacaagcaccctatcaat |
343 |
Q |
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|||||||| | |||| ||| ||||||||||| || || |||| | |||| || ||||||| ||||||||| ||| ||||| | || |||||||| |
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| T |
55350905 |
gtaacaacgggcaatgatcggaaacgtctctaggtagaacccctaaagatggggaaccccacaccaactcccaatcctccgacaccaagactctatcaat |
55350806 |
T |
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| Q |
344 |
cctactcatggccactccattggagttataccaagtaaacttcc |
387 |
Q |
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|||||||||||||| ||||| || | | |||| |||||||||| |
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| T |
55350805 |
tctactcatggccaccccattagaatgaaaccacgtaaacttcc |
55350762 |
T |
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