View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17990_low_17 (Length: 456)
Name: NF17990_low_17
Description: NF17990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17990_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 18 - 436
Target Start/End: Original strand, 12861316 - 12861734
Alignment:
| Q |
18 |
atctaggtcgtggcagatatgaaaactttcgcacttaccatgtctacattcatgaaagccaaatcaacttcgaagtcaccgttaccgccactgcttccgt |
117 |
Q |
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| T |
12861316 |
atctaggtcgtgacagatatgaaaaccttcgcacttaccatgtctacattcacgaaagccaaatcaacttcgaagtcaccgttaccgccactgcttccgt |
12861415 |
T |
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| Q |
118 |
cgtaacaaactggctccgtacaatgctcgatcatcaccttcaatacctccgcaactgtaatcttgttgtcggcctcggcgttcaatggactaaccgcaac |
217 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12861416 |
tgtaacaaactggctccgtactatgctcgatcatcaccttcaatacctccgcaactgtaatcttgttgtcggcctcggcgttcaatggactaaccgcaac |
12861515 |
T |
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| Q |
218 |
cttgatcctcccgccgacacgctacagttatgcatcagtggcagctgtcttatcttccacctctctcgcgcagatatgattccggtcagtctctgcaatt |
317 |
Q |
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| T |
12861516 |
cttgatcctcccgccgacacgctacagttatgcatcggtggcagctgtcttatcttccacctctctcgcgcagatatgattccggtcagtctctgcaatt |
12861615 |
T |
|
| Q |
318 |
ttctccgtcatcctaagaacaccttcgttggattctggaacgctgctgatcgtagaaggctggagagatttgatcatcgcttgcaaatgtggaaagatcc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12861616 |
ttctccgtcatcctaagaacaccttcgttggattctggaacgctgcagatcgtaggaagctggagagatttgatcatcgcttgcaaatgtggaaaaatcc |
12861715 |
T |
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| Q |
418 |
tcaggatctgaggcattac |
436 |
Q |
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| T |
12861716 |
tcaggatttgaggaattac |
12861734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 174 - 440
Target Start/End: Complemental strand, 12844009 - 12843743
Alignment:
| Q |
174 |
gtaatcttgttgtcggcctcggcgttcaatggactaaccgcaaccttgatcctcccgccgacacgctacagttatgcatcagtggcagctgtcttatctt |
273 |
Q |
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||||||| |||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12844009 |
gtaatctcattgtcggccttggcgttcaatggactcccggcaaccttgatcctcccgccgacacgctacagttatgcatcagtggcagctgtcttatctt |
12843910 |
T |
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| Q |
274 |
ccacctctctcgcgcagatatgattccggtcagtctctgcaattttctccgtcatcctaagaacaccttcgttggattctggaacgctgctgatcgtaga |
373 |
Q |
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| T |
12843909 |
ccacctctctctcgccgatatgattccggttagtctctgcaactttctccgtcatcctaagaacaccttcgttggattctggaacgctgctgatcgtaga |
12843810 |
T |
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| Q |
374 |
aggctggagagatttgatcatcgcttgcaaatgtggaaagatcctcaggatctgaggcattacaggt |
440 |
Q |
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| T |
12843809 |
aggctggagagatttgatcatcgcttgcaaatgtggaaagatcctcaggatctgaggcattacaggt |
12843743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 12844201 - 12844050
Alignment:
| Q |
18 |
atctaggtcgtggcagatatgaaaactttcgcacttaccatgtctacattcatgaaagccaaatcaacttcgaagtcaccgttaccgccactgcttccgt |
117 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
12844201 |
atctaggtcgtggcagatatgaaaaccttcgcacttaccatgtctacattcatgaaagccaaatcaacttcgaagtcaccgttaccgccacagcttccgt |
12844102 |
T |
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| Q |
118 |
cgtaacaaactggctccgtacaatgctcgatcatcaccttcaatacctccgc |
169 |
Q |
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||||||||||||||||| | |||||| ||||||| |||||| ||||||| |
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| T |
12844101 |
cgtaacaaactggctccaaagtatgctcaatcatcattttcaatccctccgc |
12844050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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