View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17990_low_18 (Length: 455)
Name: NF17990_low_18
Description: NF17990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17990_low_18 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 9 - 438
Target Start/End: Complemental strand, 439174 - 438745
Alignment:
| Q |
9 |
gagatgaatggaatgctaaccaactagtgtttgtctttatgggccttatggttttctcgttcatagccgatactcttggcacacatgatgttgttggggc |
108 |
Q |
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||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
439174 |
gagatgaatgggatgctaaccaactagtttttgtctttatgggccttatggttttctcattcatagccgatactcttggcacacatgatgttgttggggc |
439075 |
T |
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| Q |
109 |
ttttttatacgggttgattttacctcacggtaaatttgctgacatggtcgtgtcgatgactaatgattttggtattgggtttcttgcaccgatctacttt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
439074 |
ttttttatacgggttgattttacctcacggtaaatttgctgacatggtcgtgtcaatgactaatgattttggtattggctttcttgcaccgatctacttt |
438975 |
T |
|
| Q |
209 |
tgtggcaatggatcaaaactcatggtgaaaaccattttctttcagccaaattgtgcctatacacttatcattatactcttgttgtgtgttccaaagattt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
438974 |
tgtggcaatggatcaaaactcatggtgaaaaccattttctttcagccaaattgtgcctatacacttatcattatactcttgttgtgtgttccaaagattt |
438875 |
T |
|
| Q |
309 |
taagcactttgtttgccactttcttctttggcatgcgtgctcaagatgggtttgctctaggcttgcttctcaataccaagggtgtcgttgcactgataat |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
438874 |
taagcactttgtttgccactttcttctttggcatgcgtgctcaagatggttttgctctaggcttgcttctcaataccaagggtgtcgttgcactgataat |
438775 |
T |
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| Q |
409 |
gctcaatatttcttgggatagatcggtatt |
438 |
Q |
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| T |
438774 |
gctcaatatttcctgggatagatcggtatt |
438745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 178; Significance: 8e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 9 - 430
Target Start/End: Original strand, 28607729 - 28608150
Alignment:
| Q |
9 |
gagatgaatggaatgctaaccaactagtgtttgtctttatgggccttatggttttctcgttcatagccgatactcttggcacacatgatgttgttggggc |
108 |
Q |
| |
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||||||||||| ||| ||||||| |||| ||||| | ||||| ||| | |||||||| | |||| | |||| |||||| |||||||| |||||||| || |
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| T |
28607729 |
gagatgaatgggatggtaaccaattagtctttgtggtgatgggactttttgttttctcatacataactgatattcttggtacacatgacgttgttggtgc |
28607828 |
T |
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| Q |
109 |
ttttttatacgggttgattttacctcacggtaaatttgctgacatggtcgtgtcgatgactaatgattttggtattgggtttcttgcaccgatctacttt |
208 |
Q |
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| T |
28607829 |
atttgtatacgggttgattttacctcacggtaaatttgctgacatggtcacatcaatgactaatgattttggtggtgggtttctagcaccaatttacttt |
28607928 |
T |
|
| Q |
209 |
tgtggcaatggatcaaaactcatggtgaaaaccattttctttcagccaaattgtgcctatacacttatcattatactcttgttgtgtgttccaaagattt |
308 |
Q |
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| T |
28607929 |
attggcagtggattgaaactcatgttcgtgcccgttttctatcaaccaagttggccctttacacttatcattatactcttgatgtgtgttctaaagattc |
28608028 |
T |
|
| Q |
309 |
taagcactttgtttgccactttcttctttggcatgcgtgctcaagatgggtttgctctaggcttgcttctcaataccaagggtgtcgttgcactgataat |
408 |
Q |
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|||||||||||||| |||||||||| |||||||||||| ||| |||||| |||||| ||||||||||||||||||| ||||||||||||||| | ||||| |
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| T |
28608029 |
taagcactttgttttccactttcttgtttggcatgcgtactcgagatggttttgctttaggcttgcttctcaatacaaagggtgtcgttgcattaataat |
28608128 |
T |
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| Q |
409 |
gctcaatatttcttgggataga |
430 |
Q |
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|||||| ||||| ||||||||| |
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| T |
28608129 |
gctcaacatttcatgggataga |
28608150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 268 - 430
Target Start/End: Complemental strand, 7589594 - 7589433
Alignment:
| Q |
268 |
tacacttatcattatactcttgttgtgtgttccaaagattttaagcactttgtttgccactttcttctttggcatgcgtgctcaagatgggtttgctcta |
367 |
Q |
| |
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|||| |||| |||||| |||| ||| ||||| ||||||| ||| |||||||||||||| |||||| |||||| | |||| ||| ||||| |||||| || |
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| T |
7589594 |
tacatttattattatagtcttattgcatgttcaaaagattctaaacactttgtttgccagtttcttttttggcgtacgtgttca-gatggttttgcttta |
7589496 |
T |
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| Q |
368 |
ggcttgcttctcaataccaagggtgtcgttgcactgataatgctcaatatttcttgggataga |
430 |
Q |
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| T |
7589495 |
gacttgcttcttaatactaaaggtgtcgctgcgttgataatgctcaacattgattgggataga |
7589433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 1e-42; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 82 - 430
Target Start/End: Original strand, 13651691 - 13652039
Alignment:
| Q |
82 |
tcttggcacacatgatgttgttggggcttttttatacgggttgattttacctcacggtaaatttgctgacatggtcgtgtcgatgactaatgattttggt |
181 |
Q |
| |
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|||||||||||| ||| |||| || |||||| | |||||||||||||| ||||| |||||||||||||| |||||| ||| |||||| |||| |||||| |
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| T |
13651691 |
tcttggcacacaagatattgtcggagcttttgtgtacgggttgattttgcctcatggtaaatttgctgatatggtcacgtcaatgactgatgactttggt |
13651790 |
T |
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| Q |
182 |
attgggtttcttgcaccgatctacttttgtggcaatggatcaaaactcatggtgaaaaccattttctttcagccaaattgtgcctatacacttatcatta |
281 |
Q |
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| T |
13651791 |
ggcgagtttctggccccgctcttctttagtcgcaatggaatgcgcttcattgtgaaagccatattcgtccatcgaaactggcccttaacacttgtgctta |
13651890 |
T |
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| Q |
282 |
tactcttgttgtgtgttccaaagattttaagcactttgtttgccactttcttctttggcatgcgtgctcaagatgggtttgctctaggcttgcttctcaa |
381 |
Q |
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|| ||||||| |||||||||||||||||||||||||||||| ||||||| || |||||||||||| ||||||| | |||||||||||| || ||||||| |
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| T |
13651891 |
taatcttgttatgtgttccaaagattttaagcactttgtttaccactttattttttggcatgcgtactcaagacagttttgctctaggcatgattctcaa |
13651990 |
T |
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| Q |
382 |
taccaagggtgtcgttgcactgataatgctcaatatttcttgggataga |
430 |
Q |
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||| ||||||| | ||||| ||||||||||||| | ||||||||||| |
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| T |
13651991 |
tactaagggtgcccttgcattgataatgctcaacacagcttgggataga |
13652039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 269 - 430
Target Start/End: Original strand, 13659364 - 13659525
Alignment:
| Q |
269 |
acacttatcattatactcttgttgtgtgttccaaagattttaagcactttgtttgccactttcttctttggcatgcgtgctcaagatgggtttgctctag |
368 |
Q |
| |
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|||||| | |||||| ||||||| |||||||| ||||||||||||||||||||||| |||||||| ||||| |||||| ||||||| | || ||||| | |
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| T |
13659364 |
acacttgttattataatcttgttatgtgttccgaagattttaagcactttgtttgctactttcttttttggtatgcgtactcaagacagtttagctctcg |
13659463 |
T |
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| Q |
369 |
gcttgcttctcaataccaagggtgtcgttgcactgataatgctcaatatttcttgggataga |
430 |
Q |
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| T |
13659464 |
gcatgattctcaatacaaagggtgcccttgcactgataatgctcaacacatcttgggataga |
13659525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 13659172 - 13659245
Alignment:
| Q |
77 |
gatactcttggcacacatgatgttgttggggcttttttatacgggttgattttacctcacggtaaatttgctga |
150 |
Q |
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|||| |||||| ||||| || |||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
13659172 |
gatattcttggaacacaagacattgttggggcttttgtgtacgggttgattttacctcacggtaaatttgctga |
13659245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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