View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17990_low_21 (Length: 407)
Name: NF17990_low_21
Description: NF17990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17990_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 42947248 - 42947642
Alignment:
| Q |
1 |
acttcgggtgatattttctaaggttgtgaaatctgcaagcagtcataaaatactgatgctgcggttttgttggtcttcccttgttataatcattacagct |
100 |
Q |
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| T |
42947248 |
acttcgggtgatattttctaaggttgtgaaatctgcaagcagtcataaaatactgatgctgcggttttgttggtcttcccttgttataatcattacagct |
42947347 |
T |
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| Q |
101 |
tcagctttggcatgccatcgggttgttctgtcactgtctgaggcttacttgggcccaatattcgatgcacctaagcgtaagagatatgcagtcattgcat |
200 |
Q |
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| T |
42947348 |
tcagctttggcatgccatcgggttgttctgtcactgtctgaggcttacttgggcccaatattcgatgcacctaagcgtaagagatatgcagtcattgcat |
42947447 |
T |
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| Q |
201 |
gatattcttagaacattgacacttttcctaccaatagagagacattatcatccaacaaagtaaaaatgttttagctttgaaggcaattagtgtgaggaag |
300 |
Q |
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| T |
42947448 |
gatattcttagaacattgacacttttcctaccaatagagagacattatcatccaacaaagtaaaaatgttttagctttgaaggcaattagtgtgaggaag |
42947547 |
T |
|
| Q |
301 |
gtaaaatatgtggttataggaggatagcattatcttttggttacacacttacattttgtatatgaggggtactctgtattctcttgactgatatt |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
42947548 |
gtaaaatatgtggttataggaggatagcattatcttttggttacacacttacattttgtatatgaggggtactctgtattctcttaactgatatt |
42947642 |
T |
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