View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17990_low_22 (Length: 407)
Name: NF17990_low_22
Description: NF17990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17990_low_22 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 118 - 396
Target Start/End: Original strand, 34788900 - 34789167
Alignment:
| Q |
118 |
actgcatatgtttgagtattttccaagatgatgaaaaggtgaaggtgttaacagaacgtcaaaatgtttatcattctgagtgcttgatatgtggcttagc |
217 |
Q |
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| T |
34788900 |
actgcatatgtttgagtattttccaagatgatg-----------gtgttaacagaacgtcaaaatgtttatcattctgagtgcttgatatgtggcttagc |
34788988 |
T |
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| Q |
218 |
gctcatccgagttgccgtctctgtagagcttcgttccacacatattagtaattaattttctaaagaaattgcatgttattaaggtctgttgaccactgta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34788989 |
gctcatccgagttgccgtctctgtagagcttcgttccacacatattagtaattaattttctaaagaaattgcatgttattaaggtctgttgaccactgta |
34789088 |
T |
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| Q |
318 |
tcaacagtttgatagatagaatagtggatagtgcatgacttgaatgtaagatatatgtttctgtgcaacatctctgctc |
396 |
Q |
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| T |
34789089 |
tcaacagtttgatagatagaatagtggatagtgcatgacttgaatgtaagatatatgtttctgtgcaacatctctgctc |
34789167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 52 - 286
Target Start/End: Complemental strand, 2290216 - 2289977
Alignment:
| Q |
52 |
tgggagcattgggattgatttgaaacattatgttttttgatggtactggttttgagaataag---gaatactgcatatgtttgagtattttccaagatga |
148 |
Q |
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| T |
2290216 |
tgggagcattgggattgatttgaaactttatggtttt-gatggtactggttttgagactaagaaggaatactgcatatgtttgagtattttccgagataa |
2290118 |
T |
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| Q |
149 |
tgaaaaggtgaaggtgttaacagaacgtcaaaatgtttatcattctgagtgcttgatatgtggcttagcgc---tcatccgagttgccgtctctgtagag |
245 |
Q |
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| T |
2290117 |
tgaaatggtgaaggtgttaacagaatgtcagcatgtttatcattctgagtgcttgatatgtggcttagtgctcatcatcctagttgccctctctgttgaa |
2290018 |
T |
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| Q |
246 |
cttcgttccacacatattagtaattaattttctaaagaaat |
286 |
Q |
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| T |
2290017 |
cttcgctccacacatgttagtaataaattttctaaagaaat |
2289977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 252 - 331
Target Start/End: Complemental strand, 2289952 - 2289873
Alignment:
| Q |
252 |
tccacacatattagtaattaattttctaaagaaatt-gcatgttattaaggtctgttgaccactgtatcaacagtttgata |
331 |
Q |
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| T |
2289952 |
tccacacatgttagtaattaattttctaaagaaattaacatattatcaagttttgttgacca-tctatcaacagtttgata |
2289873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 316 - 353
Target Start/End: Complemental strand, 2289849 - 2289812
Alignment:
| Q |
316 |
tatcaacagtttgatagatagaatagtggatagtgcat |
353 |
Q |
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| T |
2289849 |
tatcaacagtttgatggatagaatagtggatagtgcat |
2289812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 125 - 284
Target Start/End: Original strand, 1334 - 1495
Alignment:
| Q |
125 |
atgtttgagtattttccaagatgatgaaaaggtgaaggtgttaacagaacgtcaaaatgtttatcattctgagtgcttg-atatgtggcttagcgctcat |
223 |
Q |
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||||||||||||||| |||||||||||||||||| | ||||||||||| ||||| || ||||||||| | || |||| ||||||||||||| |||||| |
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| T |
1334 |
atgtttgagtatttttcaagatgatgaaaaggtgtggttgttaacagaatgtcaacatatttatcattacgggtacttgcatatgtggcttagtgctcat |
1433 |
T |
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| Q |
224 |
ccgagtt-gccgtctctgtagagcttcgttccacacatattagtaattaattttctaaagaa |
284 |
Q |
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| T |
1434 |
cctagtttgcccactttctagagcttccctctatacctgttagtaatcaattttctaaagaa |
1495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 111 - 242
Target Start/End: Complemental strand, 7317588 - 7317456
Alignment:
| Q |
111 |
aaggaatactgcatatgtttgagtattttccaagatgatgaaaaggtgaaggtgttaacagaacgtcaaaatgtttatcattctgagtgctt-gatatgt |
209 |
Q |
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||||||| |||||||||||||||| ||| |||||||||||| |||||| | ||||||||||| |||| |||||||||||| | ||||||| |||| || |
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| T |
7317588 |
aaggaatgttgcatatgtttgagtacttttcaagatgatgaataggtgaggttgttaacagaatatcaacatgtttatcattatcagtgcttggataggt |
7317489 |
T |
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| Q |
210 |
ggcttagcgctcatccgagttgccgtctctgta |
242 |
Q |
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| T |
7317488 |
gacttagtactcatcctagttgcccgctctgta |
7317456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 128 - 249
Target Start/End: Original strand, 2632722 - 2632844
Alignment:
| Q |
128 |
tttgagtattttccaagatgatgaaaaggtgaaggtgttaacagaacgtcaaaatgtttatcattctgagtgctt-gatatgtggcttagcgctcatccg |
226 |
Q |
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||||||||||||||||||| |||||||||||| | ||||||||||| | || ||||||||| || |||||||| | |||||||||||| |||||| | |
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| T |
2632722 |
tttgagtattttccaagataatgaaaaggtgaggttgttaacagaatggaaacatgtttatccttgcgagtgcttgggtatgtggcttagtgctcattct |
2632821 |
T |
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| Q |
227 |
agttgccgtctctgtagagcttc |
249 |
Q |
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| T |
2632822 |
agttgactgctctgtagagcttc |
2632844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 2494791 - 2494856
Alignment:
| Q |
97 |
ctggttttgagaat---aaggaatactgcatatgtttgagtattttccaagatgatgaaaaggtga |
159 |
Q |
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|||||||||||||| ||||||| |||||||||||||||||||| |||||||| | |||||||| |
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| T |
2494791 |
ctggttttgagaattagaaggaatgttgcatatgtttgagtatttttcaagatgaaggaaaggtga |
2494856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 287
Target Start/End: Complemental strand, 9564816 - 9564734
Alignment:
| Q |
205 |
tatgtggcttagcgctcatccgagttgccgtctctgtagagcttcgttccacacatattagtaattaattttctaaagaaatt |
287 |
Q |
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|||||||||||| | |||||| ||||| | |||| ||||||||| |||| |||| ||||| || ||||||||||||||||| |
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| T |
9564816 |
tatgtggcttagtgttcatcctagttgactgctctatagagcttccctccatacatgttagtcataaattttctaaagaaatt |
9564734 |
T |
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