View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17990_low_26 (Length: 351)
Name: NF17990_low_26
Description: NF17990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17990_low_26 |
 |  |
|
| [»] scaffold0177 (1 HSPs) |
 |  |  |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 14)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 349
Target Start/End: Complemental strand, 37720737 - 37720409
Alignment:
| Q |
17 |
acaacagacttgtctgtcaacctttggcgtgggtgcacgtcatttactcaaaaatctcaagatcatcatggttccatgtatgacatgtctactagccatg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37720737 |
acaacagacttgtctgtcaacctttggcgtgggtgcacgtcatttactcaaaaatctcaagatcatcatggttccatatatgacatgtctactagccatg |
37720638 |
T |
 |
| Q |
117 |
cgcgtgaaaaaagttaatatcacaacttaatttttgtgttacaataattctccaccattttaaaaaagnnnnnnnnaaatattaaaaaaggacatgtgta |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37720637 |
cgcgtgaaaaaagttaatatcacaacttaatttttgtgttacaataattctccaccattttaaaaaagttttttttaaatattaaaaaaggacatgtgta |
37720538 |
T |
 |
| Q |
217 |
gatgtctcttgtttgatgtcacatatgggttccaatatctttctatnnnnnnnnnnntatatctgttccaatatcatttttcttcatggaattgtctcat |
316 |
Q |
| |
|
|| |||||||||||||||||||||||| |||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
37720537 |
gacgtctcttgtttgatgtcacatatgtgttccaatatctttctataaaaaaaa----aaatctgttcaaatatcatttttcttcatggaattgtctcat |
37720442 |
T |
 |
| Q |
317 |
ttggctagtgtcaagtcttgtaatatttctgtg |
349 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||| |
|
|
| T |
37720441 |
ttggctagagtcaagtcttgtaatatttgtgtg |
37720409 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 17 - 349
Target Start/End: Complemental strand, 37597044 - 37596715
Alignment:
| Q |
17 |
acaacagacttgtctgtcaacctttggcgtgggtgcacgtcatttactcaaaaatctcaagatcatcatggttccatgtatgacatgtctactagccatg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
37597044 |
acaacagacttgtctgtcaacctttggcgtgggtgcacgtcatttactcaaaaatctcaagatcatcatagttccatatatgacatgtctactagccatg |
37596945 |
T |
 |
| Q |
117 |
cgcgtgaaaaaagttaatatcacaacttaatttttgtgttacaataattctccaccattttaaaaaagnnnnnnnnaaatattaaaaaaggacatgtgta |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
37596944 |
cgcgtgaaaaaagttaatatcacaacttaatttttgtgttacaataattctccaccattttaaaaaagttttttttaaatattaaaaaagaacatgtgta |
37596845 |
T |
 |
| Q |
217 |
gatgtctcttgtttgatgtcacatatgggttccaatatctttctatnnnnnnnnnnntatatctgttccaatatcatttttcttcatggaattgtctcat |
316 |
Q |
| |
|
|| |||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37596844 |
gacgtctcttgtttgatgtcacatatgtgttccaatatctttctataaaaaaaaa---aaatctgttccaatatcatttttcttcatggaattgtctcat |
37596748 |
T |
 |
| Q |
317 |
ttggctagtgtcaagtcttgtaatatttctgtg |
349 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |
|
|
| T |
37596747 |
ttggctaaagtcaagtcttgtaatatttctgtg |
37596715 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 346
Target Start/End: Complemental strand, 37535797 - 37535463
Alignment:
| Q |
17 |
acaacagacttgtctgtcaacctttggcgtgggtgcacgtcatttactcaaaaatctcaagatcatcatggttccatgtatgacatgtctactagccatg |
116 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37535797 |
acaacagatttgtctgtcaacctttggcgtgggtgcacgtcatttactcaaaaatctcaagatcatcatggttccatgtatgacatgtctactagccatg |
37535698 |
T |
 |
| Q |
117 |
cgcgtgaa--aaaagttaatatcacaacttaatttttgtgttacaataattctccaccattttaaaaaagnnnnnnnnaaatattaaaaaaggacatgtg |
214 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37535697 |
cgcgtgaaaaaaaagttaatatcacaacttaatttttgtgttacaataattctccaccattttaaaaaagttttttttaaatattaaaaaaggacatgtg |
37535598 |
T |
 |
| Q |
215 |
tagatgtctcttgtttgatgtcacatatgggttccaatatctttctatnnnnnnnnnnnt-atatctgttcca--atatcatttttcttcatggaattgt |
311 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||| |||||||||| | |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37535597 |
tagacgtctcttgtttgatgtcacatatgtgttccaaaatctttctattaaaaaaataataatatctgttccaatatatcatttttcttcatggaattgt |
37535498 |
T |
 |
| Q |
312 |
ctcatttggctagtgtcaagtcttgtaatatttct |
346 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |
|
|
| T |
37535497 |
ctcatttggctaaagtcaagtcttgtaatatttct |
37535463 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 115 - 349
Target Start/End: Complemental strand, 37826451 - 37826219
Alignment:
| Q |
115 |
tgcgcgtgaaaaaagttaatatcacaacttaatttttgtgttacaataattctccaccattttaaaaaagnnnnnnnnaaatattaaaaaaggacatgtg |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
37826451 |
tgcgcgtgaaaaaagttaatatcacaacttaatttttgtgttacaataattctcctccattttaaaaaagtttttttttaatattaaaaaaggacatgtg |
37826352 |
T |
 |
| Q |
215 |
tagatgtctcttgtttgatgtcacatatgggttccaatatctttctatnnnnnnnnnnntatatctgttccaatatcatttttcttcatggaattgtctc |
314 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37826351 |
tagacgtctcttgtttgatgtcacatatgtgttccaatatctttctataaaaaaaaaagtat--ctgttccaatatcatttttcttcatggaattgtctc |
37826254 |
T |
 |
| Q |
315 |
atttggctagtgtcaagtcttgtaatatttctgtg |
349 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||| |
|
|
| T |
37826253 |
atttggctagagtcaagtcttgtaatatttgtgtg |
37826219 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 37826598 - 37826501
Alignment:
| Q |
17 |
acaacagacttgtctgtcaacctttggcgtgggtgcacgtcatttactcaaaaatctcaagatcatcatggttccatgtatgacatgtctactagcca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37826598 |
acaacagacttgtctgtcaacctttggcgtgggtgcacgtcatttactcaaaaatctcaagatcatcatggttccatgtatgacatgtctactagcca |
37826501 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 37644922 - 37644825
Alignment:
| Q |
17 |
acaacagacttgtctgtcaacctttggcgtgggtgcacgtcatttactcaaaaatctcaagatcatcatggttccatgtatgacatgtctactagcca |
114 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
37644922 |
acaacagacttgtctgtcaacctttgacatgggtgcacgtcatttactcaaaaatctcaagatcatcatggttccatgtatgagatgtctactagcca |
37644825 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 10245791 - 10245706
Alignment:
| Q |
21 |
cagacttgtctgtcaacctttggcgtgggtgcacgtcatttactcaaaaatctcaagatcatcatggttccatgtatgacatgtct |
106 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
10245791 |
cagacttgtctgtcaaccttcggcgtgggtgcacgtcatttactcaaaaatctcgagatcatcatggttccatgtatgagatgtct |
10245706 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 115 - 255
Target Start/End: Complemental strand, 37644775 - 37644633
Alignment:
| Q |
115 |
tgcgcgtgaaaaaagttaatatcacaacttaatttttgtgttacaataattctccaccattttaaaaaa--gnnnnnnnnaaatattaaaaaaggacatg |
212 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| || ||||||||||||||| |
|
|
| T |
37644775 |
tgcgcgtggaaaaagttaatatcacaacttaatttttgtgttacaataattcttctccattttaaaaaaattcttttattttattttaaaaaaggacatg |
37644676 |
T |
 |
| Q |
213 |
tgtagatgtctcttgtttgatgtcacatatgggttccaatatc |
255 |
Q |
| |
|
|||| | ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
37644675 |
tgtaaacgtctcttgtttgatgtcacatatatgttccaatatc |
37644633 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 275 - 346
Target Start/End: Complemental strand, 37642396 - 37642325
Alignment:
| Q |
275 |
atatctgttccaatatcatttttcttcatggaattgtctcatttggctagtgtcaagtcttgtaatatttct |
346 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
37642396 |
atatatgttccaatatcatttttcttcatggaattgtctcatttggctaaagccaagtcttgtaatatttct |
37642325 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 275 - 344
Target Start/End: Complemental strand, 37644649 - 37644580
Alignment:
| Q |
275 |
atatctgttccaatatcatttttcttcatggaattgtctcatttggctagtgtcaagtcttgtaatattt |
344 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
37644649 |
atatatgttccaatatcatttttcttcatggaattgtctcatttggctaaagccaagtcttgtaatattt |
37644580 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 184
Target Start/End: Complemental strand, 37642513 - 37642457
Alignment:
| Q |
130 |
ttaatatcacaacttaatt--tttgtgttacaataattctccaccattttaaaaaag |
184 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
37642513 |
ttaatattacaacttaattaatttgtgttacaataattctcctccattttaaaaaag |
37642457 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 275 - 342
Target Start/End: Original strand, 37370221 - 37370288
Alignment:
| Q |
275 |
atatctgttccaatatcatttttcttcatggaattgtctcatttggctagtgtcaagtcttgtaatat |
342 |
Q |
| |
|
||||||| || ||||| ||||||||||||||| || |||||||||||| ||||||||||||||||| |
|
|
| T |
37370221 |
atatctgatctaatatgatttttcttcatggacatggctcatttggctatagtcaagtcttgtaatat |
37370288 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 287 - 346
Target Start/End: Original strand, 37395632 - 37395691
Alignment:
| Q |
287 |
atatcatttttcttcatggaattgtctcatttggctagtgtcaagtcttgtaatatttct |
346 |
Q |
| |
|
|||||||||||||||||||| ||| |||||| ||||| |||||||||||| |||||||| |
|
|
| T |
37395632 |
atatcatttttcttcatggacttggctcattcggctaaagtcaagtcttgtcatatttct |
37395691 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 37387790 - 37387830
Alignment:
| Q |
134 |
tatcacaacttaatttttgtgttacaataattctccaccat |
174 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
37387790 |
tatcacaacttaatttttgtgttacaatagttctcctccat |
37387830 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 21732021 - 21731932
Alignment:
| Q |
17 |
acaacagacttgtctgtcaacctttggcgtgggtgcacgtcatttactcaaaaatctcaagatcatcatggttccatgtatgacatgtct |
106 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
21732021 |
acaacagacttgtctgtcaaccttcggcgtgggtgcacgtcatttactcaaaaatctcaagatcatcatggttccatgtatgagatgtct |
21731932 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 27663869 - 27663780
Alignment:
| Q |
17 |
acaacagacttgtctgtcaacctttggcgtgggtgcacgtcatttactcaaaaatctcaagatcatcatggttccatgtatgacatgtct |
106 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
27663869 |
acaacagacttatctgtcaaccttcggcgtgggtgcacgtcatttactcaaaaatctcaagatcatcatggttccatgtatgagatgtct |
27663780 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 10365083 - 10365001
Alignment:
| Q |
17 |
acaacagacttgtctgtcaacctttggcgtgggtgcacgtcatttact-caaaaatctcaagatcatcatggttccatgtatg |
98 |
Q |
| |
|
|||||| |||||| |||||||||| || |||||||||||||||||||| ||||||||||| ||||||||||||||| ||||| |
|
|
| T |
10365083 |
acaacaaacttgtatgtcaaccttcggtgtgggtgcacgtcatttactaaaaaaatctcaaaatcatcatggttccacgtatg |
10365001 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 18062783 - 18062872
Alignment:
| Q |
17 |
acaacagacttgtctgtcaacctttggcgtgggtgcacgtcatttactcaaaaatctcaagatcatcatggttccatgtatgacatgtct |
106 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
18062783 |
acaacagacttgtctgtcaaccttcggcgtgggtgcacgtcatttactcaaaaatctcgagatcatcatggttccatgtatgagatgtct |
18062872 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0177 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: scaffold0177
Description:
Target: scaffold0177; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 21 - 106
Target Start/End: Original strand, 4320 - 4405
Alignment:
| Q |
21 |
cagacttgtctgtcaacctttggcgtgggtgcacgtcatttactcaaaaatctcaagatcatcatggttccatgtatgacatgtct |
106 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
4320 |
cagacttgtctgtcaaccttcggcgtgggtgcacgtcatttactcaaaaatctcgagatcatcatggttccatgtatgagatgtct |
4405 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 10989817 - 10989732
Alignment:
| Q |
21 |
cagacttgtctgtcaacctttggcgtgggtgcacgtcatttactcaaaaatctcaagatcatcatggttccatgtatgacatgtct |
106 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
10989817 |
cagacttgtctgtcaaccttcggcgtgggtgcacgtcatttactcaaaaatctcgagatcatcatggttccatgtatgagatgtct |
10989732 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 7e-34; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 17921172 - 17921087
Alignment:
| Q |
21 |
cagacttgtctgtcaacctttggcgtgggtgcacgtcatttactcaaaaatctcaagatcatcatggttccatgtatgacatgtct |
106 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
17921172 |
cagacttgtctgtcaaccttcggcgtgggtgcacgtcatttactcaaaaatctcgagatcatcatggttccatgtatgagatgtct |
17921087 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 274 - 342
Target Start/End: Complemental strand, 14557513 - 14557445
Alignment:
| Q |
274 |
tatatctgttccaatatcatttttcttcatggaattgtctcatttggctagtgtcaagtcttgtaatat |
342 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||| ||| |||||||||||| ||||||||||||||||| |
|
|
| T |
14557513 |
tatatatgttccaatgtcatttttcttcatggacttgactcatttggctaaagtcaagtcttgtaatat |
14557445 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 184
Target Start/End: Complemental strand, 14557650 - 14557607
Alignment:
| Q |
141 |
acttaatttttgtgttacaataattctccaccattttaaaaaag |
184 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||| ||||||| |
|
|
| T |
14557650 |
acttaattattgtgttacaataattctcctccatttaaaaaaag |
14557607 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 21420752 - 21420841
Alignment:
| Q |
17 |
acaacagacttgtctgtcaacctttggcgtgggtgcacgtcatttactcaaaaatctcaagatcatcatggttccatgtatgacatgtct |
106 |
Q |
| |
|
||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
21420752 |
acaaccgacttatctgtcaaccttcggcgtgggtgcacgtcatttactcaaaaatctcaagatcatcatggttccatgtatgagatgtct |
21420841 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 16692015 - 16691926
Alignment:
| Q |
17 |
acaacagacttgtctgtcaacctttggcgtgggtgcacgtcatttactcaaaaatctcaagatcatcatggttccatgtatgacatgtct |
106 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||| |||||| |
|
|
| T |
16692015 |
acaatagacttgtctgtcaaccttctgcgtgggtgtacgtcatttactcaaaaatctcaagatcatcatagttctatgtatgagatgtct |
16691926 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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