View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17990_low_27 (Length: 351)
Name: NF17990_low_27
Description: NF17990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17990_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 19 - 336
Target Start/End: Original strand, 44167024 - 44167341
Alignment:
| Q |
19 |
gtgtcaacatggtgcacccatgtgcattttttgtgccttcgaatattaacatggtttttcgggataaagattttcgtgaaacggtctatgaatgttggga |
118 |
Q |
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| T |
44167024 |
gtgtcaacatggtgcacccatgtgcattttttgtgccttcgaatattaacatggtttttcgggataaagattttcgtgaaacggtctatgaatgttggga |
44167123 |
T |
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| Q |
119 |
gtgtggctaaatgggtgaacttttgatgttgagattcgttgttgatattggtgattttccaaacgcggattttgttatcttggtgagcagtgaaaagctt |
218 |
Q |
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| T |
44167124 |
gtgtggctaaatgggtgaacttttgttgttgagattcgttgttgatattggtgattttccaaacgcggattttgttatcttggtgagcagtgaaaagctt |
44167223 |
T |
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| Q |
219 |
gtctgaatgaactacaatggatttcacagcaccatttccagatactattgtgttagtgttaattgattgttgagggtgagaatgaacatgagaaaggttc |
318 |
Q |
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| T |
44167224 |
gtctgaatgaactacaatggatttcacagcaccatttccagatactattgtgttagtgttaattgattgttgagggtgagaatgaacatgagaaaggttc |
44167323 |
T |
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| Q |
319 |
catgatatgacttctgtg |
336 |
Q |
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| T |
44167324 |
catgatgtgacttctgtg |
44167341 |
T |
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Back To:
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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 35312895 - 35312970
Alignment:
| Q |
17 |
cagtgtcaacatggtgcacccatgtgcattttttgtgccttcgaatattaacatggtttttcgggataaagatttt |
92 |
Q |
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| T |
35312895 |
cagtgtccacatgatgaacccacgtgcattttttgtgtctacgaatttggacatggttttttgggattaagatttt |
35312970 |
T |
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