View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17990_low_28 (Length: 349)

Name: NF17990_low_28
Description: NF17990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17990_low_28
NF17990_low_28
[»] scaffold0606 (2 HSPs)
scaffold0606 (87-335)||(5278-5526)
scaffold0606 (6-90)||(5562-5646)
[»] chr3 (14 HSPs)
chr3 (95-335)||(54285066-54285306)
chr3 (95-273)||(12411997-12412176)
chr3 (95-256)||(19643547-19643708)
chr3 (95-225)||(7920866-7920996)
chr3 (245-332)||(7920990-7921076)
chr3 (108-240)||(19225631-19225761)
chr3 (8-90)||(10738133-10738213)
chr3 (205-255)||(1464151-1464201)
chr3 (161-255)||(19658176-19658270)
chr3 (161-253)||(17762288-17762381)
chr3 (161-253)||(19063608-19063701)
chr3 (206-254)||(12410047-12410095)
chr3 (207-255)||(17769238-17769286)
chr3 (207-255)||(19070539-19070587)
[»] scaffold1681 (1 HSPs)
scaffold1681 (93-333)||(1107-1346)
[»] chr7 (18 HSPs)
chr7 (87-332)||(11376619-11376863)
chr7 (154-333)||(20598116-20598294)
chr7 (99-333)||(15304391-15304624)
chr7 (129-333)||(9065288-9065496)
chr7 (121-250)||(12598107-12598235)
chr7 (93-332)||(16812695-16812931)
chr7 (149-336)||(19417042-19417217)
chr7 (157-256)||(10254524-10254623)
chr7 (217-324)||(3779094-3779200)
chr7 (156-332)||(9802960-9803136)
chr7 (157-256)||(9804932-9805031)
chr7 (149-256)||(24811284-24811391)
chr7 (157-249)||(9762551-9762643)
chr7 (205-255)||(2501281-2501331)
chr7 (208-254)||(11572447-11572493)
chr7 (158-255)||(1878441-1878538)
chr7 (205-253)||(15871328-15871376)
chr7 (195-255)||(23125803-23125863)
[»] chr2 (6 HSPs)
chr2 (139-334)||(14867047-14867242)
chr2 (93-332)||(27745895-27746133)
chr2 (87-262)||(26815777-26815952)
chr2 (111-273)||(19498830-19498992)
chr2 (147-332)||(33240463-33240648)
chr2 (147-332)||(33248384-33248569)
[»] chr6 (9 HSPs)
chr6 (96-333)||(14079596-14079833)
chr6 (87-305)||(16739991-16740208)
chr6 (95-319)||(27988567-27988792)
chr6 (93-328)||(13243014-13243249)
chr6 (96-324)||(31719757-31719984)
chr6 (139-255)||(14758166-14758282)
chr6 (38-90)||(16740244-16740297)
chr6 (39-88)||(12399019-12399068)
chr6 (219-255)||(15478031-15478067)
[»] chr1 (8 HSPs)
chr1 (97-333)||(23917613-23917848)
chr1 (156-333)||(23549991-23550168)
chr1 (157-279)||(10153862-10153983)
chr1 (161-254)||(18209006-18209098)
chr1 (6-88)||(21616760-21616840)
chr1 (156-255)||(22640144-22640243)
chr1 (205-256)||(25399234-25399285)
chr1 (210-332)||(31359112-31359234)
[»] chr8 (6 HSPs)
chr8 (154-333)||(15598531-15598709)
chr8 (157-330)||(24635100-24635273)
chr8 (240-336)||(17879411-17879507)
chr8 (157-255)||(17687837-17687935)
chr8 (97-176)||(17879590-17879669)
chr8 (207-255)||(27739737-27739785)
[»] scaffold0340 (1 HSPs)
scaffold0340 (93-327)||(17753-17986)
[»] chr5 (3 HSPs)
chr5 (87-330)||(12078648-12078886)
chr5 (6-90)||(12078922-12079005)
chr5 (172-256)||(26118808-26118892)
[»] chr4 (6 HSPs)
chr4 (95-334)||(10328471-10328709)
chr4 (93-332)||(15193463-15193687)
chr4 (95-256)||(32468613-32468773)
chr4 (165-332)||(23087471-23087638)
chr4 (205-255)||(17526586-17526636)
chr4 (172-256)||(24619508-24619592)
[»] scaffold0083 (1 HSPs)
scaffold0083 (140-334)||(49653-49846)


Alignment Details
Target: scaffold0606 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 87 - 335
Target Start/End: Complemental strand, 5526 - 5278
Alignment:
Q  87 cactatctccactacctccagcattctcatgtgcattgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggat 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5526 cactatctccactacctccagcattctcatgtgcattgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggat 5427  T
Q  187 tcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctcgaatgattctattgatgcgctagtactctt 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  5426 tcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctcgaatgattctattgatgcgctggcactctt 5327  T
Q  287 caaagtctcttttcaacctttatataaaggattgaagacttgaagaaat 335  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5326 caaagtctcttttcaacctttatataaaggattgaagacttgaagaaat 5278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0606; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 5646 - 5562
Alignment:
Q  6 agaagcataggatgtcaagctatgatataattctgaagatcaagcataatgtttctggagtgtcagaaggtcaatgaatgtcact 90  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5646 agaagcattggatgtcaagctatgatataattctgaagatcaagcataatgtttctggagtgtcagaaggtcaatgaatgtcact 5562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 95 - 335
Target Start/End: Original strand, 54285066 - 54285306
Alignment:
Q  95 ccactacctccagcattctcatgtgcattgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggattcaaaatc 194  Q
    |||||||||||| ||||||||||||||||||| |||||||| ||| ||||| |||||||||||||||| ||||| ||||||||||||  | |||||||||    
T  54285066 ccactacctccaacattctcatgtgcattgtacgaagctacaactatgtcttctttggaaaagaacggataattatttatcaaggaaatgtttcaaaatc 54285165  T
Q  195 attctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctcgaatgattctattgatgcgctagtactcttcaaagtct 294  Q
    |||| |||| ||||| ||||  |||||||||||||||| |||| || ||||||||||||||| ||  | |||| |||||||||   ||||||||||||||    
T  54285166 attcattcataggactttaatcaaatcaagcaacaaatcaatgttgattgatcaagcttctctaacaactctaatgatgcgctgacactcttcaaagtct 54285265  T
Q  295 cttttcaacctttatataaaggattgaagacttgaagaaat 335  Q
    || |||||| | |||||||||||||||||||||||||||||    
T  54285266 ctattcaacttctatataaaggattgaagacttgaagaaat 54285306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 95 - 273
Target Start/End: Original strand, 12411997 - 12412176
Alignment:
Q  95 ccactacctccagcattctcatgtgcattgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggattcaaaatc 194  Q
    |||||||||||| ||||||||| |||| |||| |||||||| ||| |||||||| |||||||||||||||||||| ||||||||||| || |||| ||||    
T  12411997 ccactacctccaacattctcatatgcaatgtacgaagctacaactatgtctcctatggaaaagaacggttaattccttatcaaggaaaggtttcagaatc 12412096  T
Q  195 att-ctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctcgaatgattctattgatg 273  Q
    ||| ||||||  |||||||||| |||||||||||||||| |||||||| |||||||||| ||| || || |||| |||||    
T  12412097 attcctttcattggacattaaccaaatcaagcaacaaatcaatgatgtatgatcaagctactctaacgactctaatgatg 12412176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 95 - 256
Target Start/End: Original strand, 19643547 - 19643708
Alignment:
Q  95 ccactacctccagcattctcatgtgcattgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggattcaaaatc 194  Q
    ||||||||| || ||||||||| |||| |||| ||||||||  ||||||||||||||||||||||||||||| || ||||||| ||| ||||||||||||    
T  19643547 ccactaccttcaacattctcatatgcaatgtacgaagctacagctgtgtctcctttggaaaagaacggttaactccttatcaacgaaaggattcaaaatc 19643646  T
Q  195 attctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctc 256  Q
    |||| |||| ||||||||||| ||||| | | | |||| ||||||| ||||||||| |||||    
T  19643647 attccttcataggacattaaccaaatccatccataaatcaatgatgcttgatcaagtttctc 19643708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 95 - 225
Target Start/End: Original strand, 7920866 - 7920996
Alignment:
Q  95 ccactacctccagcattctcatgtgcattgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggattcaaaatc 194  Q
    |||||| ||||| ||||| ||||||||||||| ||||||||   ||||||| | || ||||||||| |||||||| |||||||||||  ||||||||||     
T  7920866 ccactatctccaacattcccatgtgcattgtacgaagctacatatgtgtcttcatttgaaaagaacagttaattccttatcaaggaaatgattcaaaatt 7920965  T
Q  195 attctttcacaggacattaacgaaatcaagc 225  Q
    |||| |||| |  |||||||| |||||||||    
T  7920966 attccttcataatacattaaccaaatcaagc 7920996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 245 - 332
Target Start/End: Original strand, 7920990 - 7921076
Alignment:
Q  245 atcaagcttctcgaatgattctattgatgcgctagtactcttcaaagtctcttttcaacctttatataaaggattgaagacttgaaga 332  Q
    |||||||||||| ||||| ||||| ||||| ||   ||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  7920990 atcaagcttctcaaatgactctat-gatgcactgacactcttcaacgtctcttttcaacctctatataaaggattgaagacttgaaga 7921076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 108 - 240
Target Start/End: Complemental strand, 19225761 - 19225631
Alignment:
Q  108 cattctcatgtgcattgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggattcaaaatcattctttcacagg 207  Q
    ||||||||||| || |||| |||||||  | ||||||||||||| ||| ||  ||||||||| ||||||||| |  | |||||| |||||| |||| |||    
T  19225761 cattctcatgtacaatgtacgaagctaa-attgtgtctcctttgaaaatgat-ggttaattccttatcaagggaatgtttcaaagtcattcattcatagg 19225664  T
Q  208 acattaacgaaatcaagcaacaaattaatgatg 240  Q
    | |||||| |||||||||||||||| |||||||    
T  19225663 atattaactaaatcaagcaacaaatcaatgatg 19225631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 10738213 - 10738133
Alignment:
Q  8 aagcataggatgtcaagctatgatataattctgaagatcaagcataatgtttctggagtgtcagaaggtcaatgaatgtcact 90  Q
    |||||| ||||||||||||||||||   || |||| |||||| |||||| || |||||||| |||||||||||| ||||||||    
T  10738213 aagcattggatgtcaagctatgatag--ttatgaaaatcaagtataatggttttggagtgttagaaggtcaatggatgtcact 10738133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 1464201 - 1464151
Alignment:
Q  205 aggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttct 255  Q
    ||||||||||| |||||||||||||||| |||| || ||||||||||||||    
T  1464201 aggacattaaccaaatcaagcaacaaatcaatgttgattgatcaagcttct 1464151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 255
Target Start/End: Original strand, 19658176 - 19658270
Alignment:
Q  161 ggttaattctttatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttct 255  Q
    |||||||||  ||||||||||||| ||  |||| ||||  ||  ||||||||||| | |||||| ||||||| | ||||| ||||||||||||||    
T  19658176 ggttaattccctatcaaggaatggttttcaaattattccctcctaggacattaaccatatcaaggaacaaatcactgatgattgatcaagcttct 19658270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 253
Target Start/End: Original strand, 17762288 - 17762381
Alignment:
Q  161 ggttaattctttat-caaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagctt 253  Q
    |||||||||| ||| ||||||||| |||  |||| |||| |||  |||| |||||||||||||||||||| || | || || ||||||||||||    
T  17762288 ggttaattctctatacaaggaatgaatttcaaattattccttcctaggatattaacgaaatcaagcaacagatcattggtgattgatcaagctt 17762381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 253
Target Start/End: Original strand, 19063608 - 19063701
Alignment:
Q  161 ggttaattctttat-caaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagctt 253  Q
    |||||||||| ||| ||||||||| |||  |||| |||| |||  |||| |||||||||||||||||||| || | || || ||||||||||||    
T  19063608 ggttaattctctatacaaggaatgaatttcaaattattccttcctaggatattaacgaaatcaagcaacagatcattggtgattgatcaagctt 19063701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 12410047 - 12410095
Alignment:
Q  206 ggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttc 254  Q
    |||||||||| | |||||||||||||| |||| || |||||||||||||    
T  12410047 ggacattaaccagatcaagcaacaaatcaatgttgattgatcaagcttc 12410095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 17769238 - 17769286
Alignment:
Q  207 gacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttct 255  Q
    ||||||||| | |||||||||||||| |||| || ||||||||||||||    
T  17769238 gacattaaccatatcaagcaacaaatcaatgttgattgatcaagcttct 17769286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 19070539 - 19070587
Alignment:
Q  207 gacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttct 255  Q
    ||||||||| | |||||||||||||| |||| || ||||||||||||||    
T  19070539 gacattaaccatatcaagcaacaaatcaatgttgattgatcaagcttct 19070587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1681 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold1681
Description:

Target: scaffold1681; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 93 - 333
Target Start/End: Original strand, 1107 - 1346
Alignment:
Q  93 ctccactacctccagcattctcatgtgcattgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggattcaaaa 192  Q
    |||||||||||||| ||||||||||||||||||| |||||||| ||||||||||| ||||||||||||| | ||||| ||||||||||| |||||||||     
T  1107 ctccactacctccaacattctcatgtgcattgtacgaagctacaactgtgtctccattggaaaagaacgatgaattccttatcaaggaaaggattcaaac 1206  T
Q  193 tcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctcgaatgattctattgatgcgctagtactcttcaaagt 292  Q
    ||||||||| | | ||||||||| ||||||||||| |||| |||| ||  |||||||||||||| ||||| ||| ||||||| ||   || |||||| ||    
T  1207 tcattcttttatatgacattaaccaaatcaagcaagaaatcaatgttgaatgatcaagcttctcaaatgactct-ttgatgcactgacacgcttcaacgt 1305  T
Q  293 ctcttttcaacctttatataaaggattgaagacttgaagaa 333  Q
    |||||||| |||| |||||||||||||| ||||||||||||    
T  1306 ctcttttctacctctatataaaggattgcagacttgaagaa 1346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 87 - 332
Target Start/End: Complemental strand, 11376863 - 11376619
Alignment:
Q  87 cactatctccactacctccagcattctcatgtgcattgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggat 186  Q
    ||||| ||||||||| |||| ||||||  |||||||||||||| |||||   ||||||||| ||||||||||||||||||||| || ||||||||  |||    
T  11376863 cactacctccactacatccaacattcttgtgtgcattgtatgaggctacagttgtgtctccattggaaaagaacggttaattccttgtcaaggaaatgat 11376764  T
Q  187 tcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctcgaatgattctattgatgcgctagtactctt 286  Q
    ||||| |||||| |||| ||||||||||| |||||||||||||||| ||||||   |||||| ||||||| ||||| ||| |||||||||| | ||||||    
T  11376763 tcaaattcattccttcataggacattaaccaaatcaagcaacaaatcaatgatcaatgatcaggcttctcaaatgactct-ttgatgcgctggcactctt 11376665  T
Q  287 caaagtctcttttcaacctttatataaaggattgaagacttgaaga 332  Q
    ||  ||||||||||||||| | ||||||||||||||||| ||||||    
T  11376664 catcgtctcttttcaacctctttataaaggattgaagacgtgaaga 11376619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 154 - 333
Target Start/End: Complemental strand, 20598294 - 20598116
Alignment:
Q  154 aaagaacggttaattctttatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagctt 253  Q
    |||||||||||||||| |||||| |||| ||||||||| |||||| |||||| ||||||||| |||||||||||||||| |||| ||  |||||||||||    
T  20598294 aaagaacggttaattccttatcagggaaaggattcaaattcattccttcacatgacattaactaaatcaagcaacaaatcaatgttgaatgatcaagctt 20598195  T
Q  254 ctcgaatgattctattgatgcgctagtactcttcaaagtctcttttcaacctttatataaaggattgaagacttgaagaa 333  Q
    ||| ||||| ||| |||||||| ||  |||| |||| |||||||||| |||| | ||||||| |||||||||||||||||    
T  20598194 ctcaaatgactct-ttgatgcgttatcactcatcaacgtctcttttctacctctttataaagtattgaagacttgaagaa 20598116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 99 - 333
Target Start/End: Complemental strand, 15304624 - 15304391
Alignment:
Q  99 tacctccagcattctcatgtgcattgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggattcaaaatcattc 198  Q
    |||||||| ||||| ||||| |||| ||  |||||||   ||||||||  ||| |||| |||||||||||| |||||||| || ||||||||| ||||||    
T  15304624 tacctccaacattcccatgttcattatacaaagctacagttgtgtctctattgaaaaataacggttaattccttatcaagaaaaggattcaaattcattc 15304525  T
Q  199 tttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctcgaatgattcta-ttgatgcgctagtactcttcaaagtctctt 297  Q
     |||| ||||||  ||| |||||||||||||||| |||| ||   ||||||| ||||| |||||  ||| |||||||| |   |||||||||||||||||    
T  15304524 cttcataggacaccaactaaatcaagcaacaaatcaatgttggaagatcaagtttctcaaatga--ctacttgatgcgttgacactcttcaaagtctctt 15304427  T
Q  298 ttcaacctttatataaaggattgaagacttgaagaa 333  Q
    ||| |||| |||||||||||||||||||||||||||    
T  15304426 ttctacctctatataaaggattgaagacttgaagaa 15304391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 129 - 333
Target Start/End: Complemental strand, 9065496 - 9065288
Alignment:
Q  129 aagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaac 228  Q
    ||||||| | |||||||| ||| |||||||||| ||||||||||||||| ||| || |||||| |||||  || | ||||||||||| |||||||||| |    
T  9065496 aagctacaaatgtgtctc-tttagaaaagaacgattaattctttatcaaagaaaggtttcaaattcatttcttgataggacattaaccaaatcaagcagc 9065398  T
Q  229 aaattaatgatgtttgatcaagcttctcgaatgattctattgatgcgctagtactcttcaaagtctctttt-----caacctttatataaaggattgaag 323  Q
    |||| ||||||||||||||||| ||||| || || |||| ||||||| | | |||||||||  ||||||||     ||||||  ||||||||||||||||    
T  9065397 aaatcaatgatgtttgatcaagtttctctaacgactctaatgatgcgttggcactcttcaacctctcttttttctacaacctcaatataaaggattgaag 9065298  T
Q  324 acttgaagaa 333  Q
    ||||||||||    
T  9065297 acttgaagaa 9065288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 121 - 250
Target Start/End: Original strand, 12598107 - 12598235
Alignment:
Q  121 attgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggattcaaaatcattctttcacaggacattaacgaaat 220  Q
    |||||| |||||||| |||||||||| ||| ||||| ||| |||||||| ||||||||||| || |||||| |||||| |||| |  |||||||| ||||    
T  12598107 attgtacgaagctacaactgtgtctc-tttagaaaataacagttaattccttatcaaggaaaggtttcaaattcattccttcataaaacattaaccaaat 12598205  T
Q  221 caagcaacaaattaatgatgtttgatcaag 250  Q
    |||||||||||| |||||||||||||||||    
T  12598206 caagcaacaaatcaatgatgtttgatcaag 12598235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 93 - 332
Target Start/End: Complemental strand, 16812931 - 16812695
Alignment:
Q  93 ctccactacctccagcattctcatgtgcattgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggattcaaaa 192  Q
    |||||||||||||| ||||| |||||||||||||  || |||| | ||||| |   ||||||||||||||||||||| ||||||| |||  ||||||||     
T  16812931 ctccactacctccaacattcccatgtgcattgtactaa-ctacaattgtgtttatattggaaaagaacggttaattcgttatcaatgaaatgattcaaat 16812833  T
Q  193 tcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctcgaatgattctattgatgcgctagtactcttcaaagt 292  Q
     ||||| |||| | ||||||||| ||||||||||| |||| |||| ||  |||||||||||||  ||||| | | ||||||||||   ||   |||| ||    
T  16812832 acattccttcatatgacattaaccaaatcaagcaataaatcaatgttgaatgatcaagcttcttaaatgactat-ttgatgcgctgacacctatcaacgt 16812734  T
Q  293 ctcttttcaacctttatataaaggattgaagacttgaaga 332  Q
    |||||||| |||| | ||| || |||||||||||||||||    
T  16812733 ctcttttctacctatgtat-aatgattgaagacttgaaga 16812695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 149 - 336
Target Start/End: Complemental strand, 19417217 - 19417042
Alignment:
Q  149 ttggaaaagaacggttaattctttatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatca 248  Q
    ||||||| ||||||||||||| |||| |||||| || || ||| |||||| |||| ||||||||||| |||||||            |||||||||||||    
T  19417217 ttggaaacgaacggttaattccttataaaggaaaggttttaaattcattccttcataggacattaaccaaatcaa------------tgatgtttgatca 19417130  T
Q  249 agcttctcgaatgattctattgatgcgctagtactcttcaaagtctcttttcaacctttatataaaggattgaagacttgaagaaatt 336  Q
    | |||||| || ||||||| ||||||  |   |||||||||  |||||||||||||| |||||||| ||||| |||||||||||||||    
T  19417129 aacttctctaacgattctaatgatgcattgacactcttcaatatctcttttcaacctctatataaatgattgcagacttgaagaaatt 19417042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 256
Target Start/End: Original strand, 10254524 - 10254623
Alignment:
Q  157 gaacggttaattctttatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctc 256  Q
    ||||||||||||| ||| |||||||||| ||  |||| ||||  ||| ||||||||||| |||||||||||||||| |||| || |||||||||||||||    
T  10254524 gaacggttaattccttaacaaggaatggttttcaaattattccctcataggacattaaccaaatcaagcaacaaatcaatgttgattgatcaagcttctc 10254623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 217 - 324
Target Start/End: Original strand, 3779094 - 3779200
Alignment:
Q  217 aaatcaagcaacaaattaatgatgtttgatcaagcttctcgaatgattctattgatgcgctagtactcttcaaagtctcttttcaacctttatataaagg 316  Q
    |||||||||||||||| ||||||||||||||||| ||||| || || ||| ||||||| |    ||||||||| |||||||  |||||| ||||||||||    
T  3779094 aaatcaagcaacaaatcaatgatgtttgatcaagtttctctaacgactct-ttgatgcaccgacactcttcaacgtctcttcgcaacctctatataaagg 3779192  T
Q  317 attgaaga 324  Q
    ||||||||    
T  3779193 attgaaga 3779200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 156 - 332
Target Start/End: Complemental strand, 9803136 - 9802960
Alignment:
Q  156 agaacggttaattctttatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttct 255  Q
    |||||||||||||   ||||||||||||| ||  |||| |||| |||| ||||||| ||| ||||||||| |||||| |||| || |||||||| |||||    
T  9803136 agaacggttaatttcctatcaaggaatggttttcaaattattccttcataggacatcaaccaaatcaagcgacaaatcaatgttgattgatcaatcttct 9803037  T
Q  256 cgaatgattctattgatgcgctagta-ctcttcaaagtctcttttcaacctttatataaaggattgaagacttgaaga 332  Q
    | || || ||| |||||| ||| | | |||| ||| |||| ||| | |||| ||||||||||| |||||| |||||||    
T  9803036 ctaacgactct-ttgatgtgctggcacctctacaacgtctttttcctacctctatataaaggaatgaagatttgaaga 9802960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 256
Target Start/End: Complemental strand, 9805031 - 9804932
Alignment:
Q  157 gaacggttaattctttatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctc 256  Q
    |||||||||||||  ||||||||||||| ||  |||| |||| |||| ||||||| ||| ||||||||| |||||| |||| || |||||||| ||||||    
T  9805031 gaacggttaattccctatcaaggaatggttttcaaattattccttcataggacatcaaccaaatcaagcgacaaatcaatgttgattgatcaatcttctc 9804932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 256
Target Start/End: Original strand, 24811284 - 24811391
Alignment:
Q  149 ttggaaaagaacggttaattctttatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatca 248  Q
    |||| |||||| |||||||||  ||||||||||  ||||||||| ||||  || | ||||||||||| |||||||||||||| | |||| |||||| |||    
T  24811284 ttggtaaagaatggttaattccatatcaaggaaatgattcaaaaccatttctttataggacattaaccaaatcaagcaacaattcaatgttgtttggtca 24811383  T
Q  249 agcttctc 256  Q
    | ||||||    
T  24811384 aacttctc 24811391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 157 - 249
Target Start/End: Complemental strand, 9762643 - 9762551
Alignment:
Q  157 gaacggttaattctttatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaa 249  Q
    |||||||||||||  ||||||||||||| ||  |||| |||| |||| ||||||| ||| ||||||||| |||||| |||| || ||||||||    
T  9762643 gaacggttaattccctatcaaggaatggttttcaaattattccttcataggacatcaaccaaatcaagcgacaaatcaatgttgattgatcaa 9762551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 2501281 - 2501331
Alignment:
Q  205 aggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttct 255  Q
    ||||| ||||| | |||||||||||||| ||||||| ||||||||||||||    
T  2501281 aggactttaaccatatcaagcaacaaatcaatgatgattgatcaagcttct 2501331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 254
Target Start/End: Original strand, 11572447 - 11572493
Alignment:
Q  208 acattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttc 254  Q
    |||||||| | |||||||||||||| ||||||| |||||||||||||    
T  11572447 acattaaccatatcaagcaacaaatcaatgatgattgatcaagcttc 11572493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 255
Target Start/End: Original strand, 1878441 - 1878538
Alignment:
Q  158 aacggttaattctttatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttct 255  Q
    ||||||||||||  ||||| ||||||| ||  |||| ||||| ||  | || |||||| | |||||||||||||| |||| || ||||||||||||||    
T  1878441 aacggttaattccctatcatggaatggttttcaaattattctctcctacgatattaaccatatcaagcaacaaatcaatgttgattgatcaagcttct 1878538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 253
Target Start/End: Original strand, 15871328 - 15871376
Alignment:
Q  205 aggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagctt 253  Q
    ||||||||||  | |||||||||||||| ||||||| ||||||||||||    
T  15871328 aggacattaatcatatcaagcaacaaatcaatgatgattgatcaagctt 15871376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 23125863 - 23125803
Alignment:
Q  195 attctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttct 255  Q
    ||||||||  || |||||||| |||||||||||||||| | || || ||||||||||||||    
T  23125863 attctttcctagaacattaaccaaatcaagcaacaaatcattggtgattgatcaagcttct 23125803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 3e-54; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 139 - 334
Target Start/End: Complemental strand, 14867242 - 14867047
Alignment:
Q  139 tgtgtctcctttggaaaagaacggttaattctttatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatga 238  Q
    ||||||||  |||||||| |||| ||||||| | ||||||||| || |||||||||||||||||| ||||||||||| ||||||||||||| || |||||    
T  14867242 tgtgtctctattggaaaacaacgattaattcctcatcaaggaaaggtttcaaaatcattctttcataggacattaaccaaatcaagcaacatatcaatga 14867143  T
Q  239 tgtttgatcaagcttctcgaatgattctattgatgcgctagtactcttcaaagtctcttttcaacctttatataaaggattgaagacttgaagaaa 334  Q
    |||||||||||| ||||| || || |||| ||||||| | | ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  14867142 tgtttgatcaagtttctctaacgactctaatgatgcgttggcactcttcaacgtctcttttcaacatttatataaaggattgaagacttgaagaaa 14867047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 93 - 332
Target Start/End: Original strand, 27745895 - 27746133
Alignment:
Q  93 ctccactacctccagcattctcatgtgcattgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggattcaaaa 192  Q
    |||||||||||||| ||||| ||||||||||||| |||||||| ||||||||||| ||| ||||||||| ||||||| ||||  | ||| |||||||||     
T  27745895 ctccactacctccaacattcccatgtgcattgtacgaagctacaactgtgtctccattgaaaaagaacgtttaattccttatacatgaaaggattcaaat 27745994  T
Q  193 tcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctcgaatgattctattgatgcgctagtactcttcaaagt 292  Q
     ||||| |||| ||||||||||| |||||||||||||||| |||||||  ||||| | |||||| ||||| ||| |||||||| |   ||||||||| ||    
T  27745995 ccattccttcataggacattaaccaaatcaagcaacaaatcaatgatgaatgatcgaacttctcaaatgactct-ttgatgcgttgacactcttcaacgt 27746093  T
Q  293 ctcttttcaacctttatataaaggattgaagacttgaaga 332  Q
    |||||||||| || ||||||||||||||||||||||||||    
T  27746094 ctcttttcaatctatatataaaggattgaagacttgaaga 27746133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 87 - 262
Target Start/End: Complemental strand, 26815952 - 26815777
Alignment:
Q  87 cactatctccactacctccagcattctcatgtgcattgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggat 186  Q
    ||||| ||||||| |||||| ||||| ||||||||||||| |||||||| ||||||||||| ||| |||| || |||||||||  |||||| ||| ||||    
T  26815952 cactacctccactgcctccaacattcccatgtgcattgtacgaagctacaactgtgtctccattgaaaaataatggttaattcaatatcaaagaaaggat 26815853  T
Q  187 tcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctcgaatga 262  Q
    |||||||||||| |||| ||||||||||| |||||||||||||||| |||||||| |||||||||||||| |||||    
T  26815852 tcaaaatcattccttcataggacattaaccaaatcaagcaacaaatcaatgatgtatgatcaagcttctcaaatga 26815777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 111 - 273
Target Start/End: Original strand, 19498830 - 19498992
Alignment:
Q  111 tctcatgtgca-ttgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggattcaaaatcattctttcacaggac 209  Q
    ||||||||||| ||||| |||||||| |||||||||| |||||||||||||||  ||||| | ||||||||| |||||||||||||||| |||| |||||    
T  19498830 tctcatgtgcaattgtacgaagctacaactgtgtctc-tttggaaaagaacggacaattcctcatcaaggaaaggattcaaaatcattccttcataggac 19498928  T
Q  210 attaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctcgaatgattctattgatg 273  Q
    |||||| |||||||||||||||| ||||| ||||||||||||| ||| || ||||||| |||||    
T  19498929 attaaccaaatcaagcaacaaatcaatgaggtttgatcaagctgctctaacgattctaatgatg 19498992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 147 - 332
Target Start/End: Complemental strand, 33240648 - 33240463
Alignment:
Q  147 ctttggaaaagaacggttaattctttatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgat 246  Q
    |||||||| |||||||||||||| |  |||| |||  ||||||||  ||||  |||| ||||||||||| |||||||||||||||| |||| ||  ||||    
T  33240648 ctttggaagagaacggttaattcatcttcaatgaaatgattcaaatacatttcttcataggacattaaccaaatcaagcaacaaatcaatgttgaatgat 33240549  T
Q  247 caagcttctcgaatgattctattgatgcgctagtactct-tcaaagtctcttttcaacctttatataaaggattgaagacttgaaga 332  Q
    |||||||||| || || |||| |||| || ||| || || ||||  ||||||||| |||| |||||||| || ||||||||||||||    
T  33240548 caagcttctctaacgactcta-tgattcgttagcacactctcaacatctcttttctacctatatataaaagaatgaagacttgaaga 33240463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 147 - 332
Target Start/End: Complemental strand, 33248569 - 33248384
Alignment:
Q  147 ctttggaaaagaacggttaattctttatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgat 246  Q
    |||||||| |||||||||||||| |  |||| |||  ||||||||  ||||  |||| ||||||||||| |||||||||||||||| |||| ||  ||||    
T  33248569 ctttggaagagaacggttaattcatcttcaatgaaatgattcaaatacatttcttcataggacattaaccaaatcaagcaacaaatcaatgttgaatgat 33248470  T
Q  247 caagcttctcgaatgattctattgatgcgctagtactct-tcaaagtctcttttcaacctttatataaaggattgaagacttgaaga 332  Q
    |||||||||| || || |||| |||| || ||| || || ||||  ||||||||| |||| |||||||| || ||||||||||||||    
T  33248469 caagcttctctaacgactcta-tgattcgttagcacactctcaacatctcttttctacctatatataaaagaatgaagacttgaaga 33248384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 106; Significance: 5e-53; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 96 - 333
Target Start/End: Complemental strand, 14079833 - 14079596
Alignment:
Q  96 cactacctccagcattctcatgtgcattgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggattcaaaatca 195  Q
    ||||||||| | |||||||||||||||||||  |||||||   ||||||||||||||||||||| ||||||||| |||||||||||  ||||||||||||    
T  14079833 cactacctctaacattctcatgtgcattgtacaaagctacagttgtgtctcctttggaaaagaagggttaattccttatcaaggaaatgattcaaaatca 14079734  T
Q  196 ttctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctcgaatgattctattgatgcgctagtactcttcaaagtctc 295  Q
    ||| |||| | ||||||||| ||||||||||| |||| |||| ||  |||||||  ||||| ||||| |||||||||||| |   |||||||||   |||    
T  14079733 ttccttcatatgacattaaccaaatcaagcaataaatcaatgttgaatgatcaaaattctcaaatgactctattgatgcgttgacactcttcaacaactc 14079634  T
Q  296 ttttcaacctttatataaaggattgaagacttgaagaa 333  Q
    | |||||||| |||||||||||||||||||||||||||    
T  14079633 tattcaacctctatataaaggattgaagacttgaagaa 14079596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 87 - 305
Target Start/End: Complemental strand, 16740208 - 16739991
Alignment:
Q  87 cactatctccactacctccagcattctcatgtgcattgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggat 186  Q
    ||||| |||||||| ||| | ||||||||| ||||||||||||| ||||   |||||||||||||||||||||||| |||||| |||||| |||||||||    
T  16740208 cactacctccactatctctaacattctcatatgcattgtatgaaactacagttgtgtctcctttggaaaagaacggataattccttatcatggaatggat 16740109  T
Q  187 tcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctcgaatgattctattgatgcgctagtactctt 286  Q
    |||||||||||  |||| |||||| |||| |||||||||||||||| |||| ||  ||| |||||||||| ||||| ||| ||||||||||   ||||||    
T  16740108 tcaaaatcattacttcataggacaataaccaaatcaagcaacaaatcaatgttgaatgaccaagcttctcaaatgactct-ttgatgcgctcacactctt 16740010  T
Q  287 caaagtctcttttcaacct 305  Q
    ||| |||||||||||||||    
T  16740009 caacgtctcttttcaacct 16739991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 95 - 319
Target Start/End: Complemental strand, 27988792 - 27988567
Alignment:
Q  95 ccactacctccagcattctcatgtgcattgtatgaagct-acgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggattcaaaat 193  Q
    |||||||||||| ||||| ||| ||||||||| |||||| |  ||||||||||||||| ||||||||||||||||| |||| |||||| || | ||||||    
T  27988792 ccactacctccaacattcccatttgcattgtacgaagcttaaaactgtgtctcctttgaaaaagaacggttaattccttataaaggaaaggttccaaaat 27988693  T
Q  194 cattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctcgaatgattctattgatgcgctagtactcttcaaagtc 293  Q
    |||| ||||| | || |||||| |||||||||||||||| || |||| ||||||||||||||| ||||| |||| |||||||     |||||||||  ||    
T  27988692 cattatttcatatgaaattaaccaaatcaagcaacaaatcaacgatgcttgatcaagcttctctaatgactctagtgatgcgtcgacactcttcaacatc 27988593  T
Q  294 tcttttcaacctttatataaaggatt 319  Q
    |||||||||||| ||||| |||||||    
T  27988592 tcttttcaacctctatatgaaggatt 27988567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 93 - 328
Target Start/End: Complemental strand, 13243249 - 13243014
Alignment:
Q  93 ctccactacctccagcattctc-atgtgcattgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggattcaaa 191  Q
    ||||||||||| || |||| || ||||||||||||  ||||||| | ||||||| | |||||||| ||| ||||||||  |||||||||| ||||||||     
T  13243249 ctccactaccttcaacattttccatgtgcattgtacaaagctacaaatgtgtcttcattggaaaaaaactgttaattccatatcaaggaaaggattcaag 13243150  T
Q  192 atcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctcgaatgattctattgatgcgctagtactcttcaaag 291  Q
     | |||| |||| | |||| |||| ||||||||||||  || | |||||||||||||||||| || ||||| ||| |||||| | |  |||||||||| |    
T  13243149 tttattccttcatatgacaataaccaaatcaagcaactcatcagtgatgtttgatcaagcttttcaaatgactct-ttgatgtgatgatactcttcaacg 13243051  T
Q  292 tctcttttcaacctttatataaaggattgaagacttg 328  Q
    |||||||| ||| | ||||||||||||||||||||||    
T  13243050 tctctttttaacatctatataaaggattgaagacttg 13243014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 96 - 324
Target Start/End: Original strand, 31719757 - 31719984
Alignment:
Q  96 cactacctccagcattctcatgtgcattgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggattcaaaatca 195  Q
    ||||||||||| |||||| ||| || |||||  ||| |||   ||||||||  ||| ||||||||||||||||| || |||||||| |||||||||  ||    
T  31719757 cactacctccaacattctgatgcgcgttgtactaagatacatatgtgtctctattgaaaaagaacggttaattccttttcaaggaaaggattcaaataca 31719856  T
Q  196 ttctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctcgaatgattctattgatgcgctagtactcttcaaagtctc 295  Q
    ||| |||| | ||||||||| ||||||| |||||||| |||  ||   ||||||||||||| || || ||| ||||||||||   ||||| ||| |||||    
T  31719857 ttccttcataagacattaaccaaatcaaacaacaaatcaatattgaacgatcaagcttctcaaaagactct-ttgatgcgctgacactctccaacgtctc 31719955  T
Q  296 ttttcaacctttatataaaggattgaaga 324  Q
    ||||| |||| ||||||||||||||||||    
T  31719956 ttttctacctctatataaaggattgaaga 31719984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 255
Target Start/End: Complemental strand, 14758282 - 14758166
Alignment:
Q  139 tgtgtctcctttggaaaagaacggttaattctttatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatga 238  Q
    ||||||||  ||||||  |||| || |||||  ||||||||||||||||  |||| |||| |||| | ||||||||| | |||||||||||||| ||||     
T  14758282 tgtgtctctattggaatggaacagtcaattccctatcaaggaatggatttcaaattattccttcataagacattaaccatatcaagcaacaaatcaatgt 14758183  T
Q  239 tgtttgatcaagcttct 255  Q
    || ||||||||||||||    
T  14758182 tgattgatcaagcttct 14758166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 16740297 - 16740244
Alignment:
Q  38 ctgaagatcaagcataatgtttctggag-tgtcagaaggtcaatgaatgtcact 90  Q
    |||||||||||||| |||| ||||| || |||||||||||||||||||||||||    
T  16740297 ctgaagatcaagcacaatggttctgaagatgtcagaaggtcaatgaatgtcact 16740244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 12399068 - 12399019
Alignment:
Q  39 tgaagatcaagcataatgtttctggagtgtcagaaggtcaatgaatgtca 88  Q
    |||||||||| ||| ||| ||||| ||||| |||||||||||||||||||    
T  12399068 tgaagatcaaacatgatggttctgaagtgttagaaggtcaatgaatgtca 12399019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 255
Target Start/End: Original strand, 15478031 - 15478067
Alignment:
Q  219 atcaagcaacaaattaatgatgtttgatcaagcttct 255  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  15478031 atcaagcaacaaatcaatgatgattgatcaagcttct 15478067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 97 - 333
Target Start/End: Complemental strand, 23917848 - 23917613
Alignment:
Q  97 actacctccagcattctcatgtgcattgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggattcaaaatcat 196  Q
    |||||||||| ||||| |||||||||| || |||||||| | ||||||||| ||||||||||||| ||||||  ||||||||||| ||||||||| ||||    
T  23917848 actacctccaacattcccatgtgcattttaggaagctacaaatgtgtctccattggaaaagaacgattaattacttatcaaggaaaggattcaaactcat 23917749  T
Q  197 tctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctcgaatgattctattgatgcgctagtactcttcaaagtctct 296  Q
    ||  ||| ||||||||||| |||||||| || |||| |||| ||  |||||||||||||| ||||| ||| |||||| ||| | |||||||||  |||||    
T  23917748 tccatcataggacattaaccaaatcaaggaagaaatcaatgttgaatgatcaagcttctcaaatgactct-ttgatgtgctggcactcttcaacatctct 23917650  T
Q  297 tttcaacctttatataaaggattgaagacttgaagaa 333  Q
    |||| |||| |||||||| |||| |||||||||||||    
T  23917649 tttctacctctatataaacgattaaagacttgaagaa 23917613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 156 - 333
Target Start/End: Complemental strand, 23550168 - 23549991
Alignment:
Q  156 agaacggttaattctttatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttct 255  Q
    ||||||| |||||| |||||||| ||  ||||||||||||||| |||| | | || |||| || ||||||||||||| |||| || ||||||| ||||||    
T  23550168 agaacggataattcattatcaagaaaatgattcaaaatcattccttcataaggcactaaccaagtcaagcaacaaatcaatgttgattgatcatgcttct 23550069  T
Q  256 cgaatgattctattgatgcgctagtactcttcaaagtctcttttcaacctttatataaaggattgaagacttgaagaa 333  Q
    | ||  | ||||||||||||||   | ||||||| || ||| |||||||| |||||||||||||||||||||||||||    
T  23550068 caaacaactctattgatgcgctgacattcttcaacgtatctattcaacctctatataaaggattgaagacttgaagaa 23549991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 279
Target Start/End: Complemental strand, 10153983 - 10153862
Alignment:
Q  157 gaacggttaattctttatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctc 256  Q
    |||| |||||||| |||| ||||||||| ||  |||| |||| |||   | |||||||| |||||||||||||||| |||||||||||||||||||| ||    
T  10153983 gaacagttaattccttattaaggaatggttttcaaattattccttctttgtacattaaccaaatcaagcaacaaatcaatgatgtttgatcaagcttttc 10153884  T
Q  257 gaatgattctattgatgcgctag 279  Q
     || || ||| ||||||||||||    
T  10153883 taacgactct-ttgatgcgctag 10153862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 161 - 254
Target Start/End: Complemental strand, 18209098 - 18209006
Alignment:
Q  161 ggttaattctttatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttc 254  Q
    ||||||||| ||||||||||| || |||||  |||||| |||| ||  ||||||  |||||||||||||||| |||||||||||||||||||||    
T  18209098 ggttaattccttatcaaggaaaggtttcaat-tcattccttcatagagcattaaacaaatcaagcaacaaatcaatgatgtttgatcaagcttc 18209006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 6 - 88
Target Start/End: Complemental strand, 21616840 - 21616760
Alignment:
Q  6 agaagcataggatgtcaagctatgatataattctgaagatcaagcataatgtttctggagtgtcagaaggtcaatgaatgtca 88  Q
    |||||||  ||||||||||||||||||   ||| |||||||||||||| || ||||| ||| |||||  ||||||||||||||    
T  21616840 agaagcaatggatgtcaagctatgatag--ttcagaagatcaagcatagtggttctgaagtttcagagagtcaatgaatgtca 21616760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 156 - 255
Target Start/End: Complemental strand, 22640243 - 22640144
Alignment:
Q  156 agaacggttaattctttatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttct 255  Q
    ||||||||||||||  || ||| |||||| ||  |||| ||||  ||| || |||||||| |||||||||||||||| |||| || |||||||| |||||    
T  22640243 agaacggttaattccctaccaaagaatggttttcaaattattccctcatagaacattaaccaaatcaagcaacaaatcaatgttgattgatcaaacttct 22640144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 205 - 256
Target Start/End: Complemental strand, 25399285 - 25399234
Alignment:
Q  205 aggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctc 256  Q
    ||||||||||| |||||||||||||||| |||| || || ||||||||||||    
T  25399285 aggacattaaccaaatcaagcaacaaatcaatgttgattaatcaagcttctc 25399234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 210 - 332
Target Start/End: Complemental strand, 31359234 - 31359112
Alignment:
Q  210 attaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctcgaatgattctattgatgcgctagta-ctcttcaaagtctcttttcaaccttta 308  Q
    |||||| | |||||||||||||| ||||||| ||||||||||||||  ||||| ||| |||||| ||| | | |||| ||| ||||||||   || | ||    
T  31359234 attaaccatatcaagcaacaaatcaatgatgattgatcaagcttctacaatgactct-ttgatgtgctggcacctctacaacgtctctttcatacatcta 31359136  T
Q  309 tataaaggattgaagacttgaaga 332  Q
    |||||| || ||||||||||||||    
T  31359135 tataaatgaatgaagacttgaaga 31359112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 7e-40; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 154 - 333
Target Start/End: Complemental strand, 15598709 - 15598531
Alignment:
Q  154 aaagaacggttaattctttatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagctt 253  Q
    |||||||||||||||| |||||| |||| ||||||||| ||||| ||||| ||||||||||| |||||||||||||||| |||| ||  |||||||||||    
T  15598709 aaagaacggttaattccttatcagggaaaggattcaaattcattttttcataggacattaacaaaatcaagcaacaaatcaatgttgaatgatcaagctt 15598610  T
Q  254 ctcgaatgattctattgatgcgctagtactcttcaaagtctcttttcaacctttatataaaggattgaagacttgaagaa 333  Q
    |||   ||| |  ||||||||||| | ||||| ||| |||||||||| |||| |||||||||||||||||||||||||||    
T  15598609 ctctggtgact-aattgatgcgctggcactctccaacgtctcttttctacctctatataaaggattgaagacttgaagaa 15598531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 157 - 330
Target Start/End: Complemental strand, 24635273 - 24635100
Alignment:
Q  157 gaacggttaattctttatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctc 256  Q
    ||||||||||||| |||| ||||||||| ||  | || |||| |||| | ||||||||| |||| ||||||||||| |||||||||||||||||||||||    
T  24635273 gaacggttaattccttattaaggaatggtttttagattattccttcatatgacattaaccaaattaagcaacaaatcaatgatgtttgatcaagcttctc 24635174  T
Q  257 gaatgattctattgatgcgctagta-ctcttcaaagtctcttttcaacctttatataaaggattgaagacttgaa 330  Q
     |  || ||| |||||||||| | | |||| ||| |||||||||| ||||  ||||||| || ||||||||||||    
T  24635173 catcgactct-ttgatgcgctggaacctctacaatgtctcttttctacctccatataaatgaatgaagacttgaa 24635100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 240 - 336
Target Start/End: Complemental strand, 17879507 - 17879411
Alignment:
Q  240 gtttgatcaagcttctcgaatgattctattgatgcgctagtactcttcaaagtctcttttcaacctttatataaaggattgaagacttgaagaaatt 336  Q
    ||||||||||||||||| ||||| || | ||||||| |    |||||||| || |||||||||||| |||||||||||||||||||||||| |||||    
T  17879507 gtttgatcaagcttctctaatgagtcaaatgatgcgttgacgctcttcaacgtatcttttcaacctctatataaaggattgaagacttgaataaatt 17879411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 255
Target Start/End: Complemental strand, 17687935 - 17687837
Alignment:
Q  157 gaacggttaattctttatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttct 255  Q
    ||||| |||||||  ||||||||||||| ||  |||| |||| |||  || |||||||| | ||||||||| |||| ||||||| ||||||||||||||    
T  17687935 gaacgattaattccctatcaaggaatggttttcaaattattccttcctagaacattaaccatatcaagcaataaatcaatgatgattgatcaagcttct 17687837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 97 - 176
Target Start/End: Complemental strand, 17879669 - 17879590
Alignment:
Q  97 actacctccagcattctcatgtgcattgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatca 176  Q
    |||||||||| ||||||||||| |||| || ||||||||   ||||||||  | ||||||||| ||||||||| ||||||    
T  17879669 actacctccaacattctcatgtacattatacgaagctacatttgtgtctctataggaaaagaatggttaattccttatca 17879590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 27739785 - 27739737
Alignment:
Q  207 gacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttct 255  Q
    ||||||||| | |||||||||||||| ||||||| |||||||| |||||    
T  27739785 gacattaaccatatcaagcaacaaatcaatgatgattgatcaaacttct 27739737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 93 - 327
Target Start/End: Complemental strand, 17986 - 17753
Alignment:
Q  93 ctccactacctccagcattctcatgtgcattgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggattcaaaa 192  Q
    ||||||||||| || ||||  |||||||||| ||||||||||| |  ||||||| |||   |||||||||||||||| |||||||||||   |||||||     
T  17986 ctccactaccttcaacatttccatgtgcattatatgaagctacaatagtgtctcttttactaaagaacggttaattccttatcaaggaaaatattcaaat 17887  T
Q  193 tcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctcgaatgattctattgatgcgctagtactcttcaaagt 292  Q
    ||| || |||| | | ||||||| |||||||||||||||| |||| |||||||||| ||||||| ||||| ||| ||| ||||| |  ||||||||| ||    
T  17886 tcactcattcatatgccattaaccaaatcaagcaacaaatcaatgttgtttgatcatgcttctcaaatgactct-ttgttgcgcaaacactcttcaacgt 17788  T
Q  293 ctcttttcaacctttatataaaggattgaagactt 327  Q
    | |||||| |||| ||||||||| |||||||||||    
T  17787 cacttttctacctctatataaagaattgaagactt 17753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 87 - 330
Target Start/End: Complemental strand, 12078886 - 12078648
Alignment:
Q  87 cactatctccactacctccagcattctcatgtgcattgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggat 186  Q
    ||||| ||||| || ||||| |||||||||||||| |||| |||||| |  || |||||| ||||||||||||  | |||||| ||||||||||| ||||    
T  12078886 cactacctccattatctccaacattctcatgtgcactgtacgaagctgcagctatgtctcttttggaaaagaatagataattccttatcaaggaaaggat 12078787  T
Q  187 tcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctcgaatgattctattgatgcgctagtactctt 286  Q
    || ||||||   ||||| ||||||||||| |||||||| ||||||  ||||||| ||||||||| ||||| ||||| | |||||||||||| | | ||||    
T  12078786 tc-aaatca---tttcataggacattaaccaaatcaagaaacaaaccaatgatgcttgatcaagtttctcaaatgaatatattgatgcgctggcattctt 12078691  T
Q  287 caaagtctcttttcaacctttatataaaggattgaagacttgaa 330  Q
    ||| || || |||| |||| |||||||||||||||| |||||||    
T  12078690 caacgtatc-tttcgacctctatataaaggattgaatacttgaa 12078648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 12079005 - 12078922
Alignment:
Q  6 agaagcataggatgtcaagctatgatataattctgaagatcaagcataatgtttctgg-agtgtcagaaggtcaatgaatgtcact 90  Q
    |||||||| |||||||||||  |||||   |||||||||||||||| |||| |||||| ||||| |||||||||||| ||||||||    
T  12079005 agaagcattggatgtcaagcgttgatag--ttctgaagatcaagcacaatggttctggaagtgttagaaggtcaatggatgtcact 12078922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 256
Target Start/End: Original strand, 26118808 - 26118892
Alignment:
Q  172 tatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctc 256  Q
    ||||||||||||| ||  ||||  |||||||  ||||||| ||  |||||||||||||||| |||| || |||||||||||||||    
T  26118808 tatcaaggaatggttttgaaatttttctttcctaggacatcaatcaaatcaagcaacaaatcaatgttgattgatcaagcttctc 26118892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 95 - 334
Target Start/End: Original strand, 10328471 - 10328709
Alignment:
Q  95 ccactacctccagcattctcatgtgcattgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggattcaaaatc 194  Q
    |||||||||||| ||||| ||||||||||||| || ||||| | ||||||||   ||||   ||||||| ||||| |||||||||||||| ||  ||||     
T  10328471 ccactacctccaacattcccatgtgcattgtagga-gctacaattgtgtctctaatggattggaacggtgaattccttatcaaggaatggttttcaaatt 10328569  T
Q  195 attctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctcgaatgattctattgatgcgctagtactcttcaaagtct 294  Q
    |||| ||   ||||||||||| |||||||||||||||||||||||| ||||||||||||||| || || | |||||||| ||| | ||| |||||  | |    
T  10328570 attccttactaggacattaaccaaatcaagcaacaaattaatgatgattgatcaagcttctctaaggactatattgatgtgcttgcactattcaacatat 10328669  T
Q  295 cttttcaacctttatataaaggattgaagacttgaagaaa 334  Q
     | | |||||| ||||||||||||  |||| |||||||||    
T  10328670 atctgcaacctctatataaaggatcaaagatttgaagaaa 10328709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 93 - 332
Target Start/End: Complemental strand, 15193687 - 15193463
Alignment:
Q  93 ctccactacctccagcattctcatgtgcattgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggattcaaaa 192  Q
    |||||| ||||||| ||||  ||||||||||||| ||||||||   ||||||||| ||||||||  ||||||||||| ||||||||||| |||||||||     
T  15193687 ctccaccacctccaacatttccatgtgcattgtacgaagctacatttgtgtctccattggaaaa--acggttaattccttatcaaggaaaggattcaaat 15193590  T
Q  193 tcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctcgaatgattctattgatgcgctagtactcttcaaagt 292  Q
      |||| |||| |||||||||||            |||||||||| ||  |||||||||||||| ||||| ||| |||||| ||||  ||||||||| ||    
T  15193589 atattccttcataggacattaac------------caaattaatgttgaatgatcaagcttctcaaatgactct-ttgatgtgctaccactcttcaacgt 15193503  T
Q  293 ctcttttcaacctttatataaaggattgaagacttgaaga 332  Q
    || |||||||||| || ||||| |||| |||| |||||||    
T  15193502 cttttttcaacctctacataaaagattaaagagttgaaga 15193463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 95 - 256
Target Start/End: Original strand, 32468613 - 32468773
Alignment:
Q  95 ccactacctccagcattctcatgtgca-ttgtatgaagctacgactgtgtctcctttggaaaagaacggttaattctttatcaaggaatggattcaaaat 193  Q
    |||||||||||| ||||| |||||||| || || |||||||| ||||||||  | |||||||||||| |||||||| |  ||||||||   ||| ||| |    
T  32468613 ccactacctccaacattcccatgtgcaattatacgaagctacaactgtgtc--cattggaaaagaacagttaattcctcgtcaaggaaataattaaaatt 32468710  T
Q  194 cattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctc 256  Q
    |||||  ||| ||||||||||| ||||||||||| |||| ||| ||| | |||||||||||||    
T  32468711 cattccatcataggacattaaccaaatcaagcaagaaatcaattatgatggatcaagcttctc 32468773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 165 - 332
Target Start/End: Complemental strand, 23087638 - 23087471
Alignment:
Q  165 aattctttatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctcgaatgatt 264  Q
    |||||| ||||||||||||  ||  |||| |||| |||  ||||||||||| | |||||||||||||| |||| || ||||||||||||||| || || |    
T  23087638 aattctctatcaaggaatgattttcaaattattccttcctaggacattaaccatatcaagcaacaaatcaatgttgattgatcaagcttctctaacgact 23087539  T
Q  265 ctattgatgcgct-agtactcttcaaagtctcttttcaacctttatataaaggattgaagacttgaaga 332  Q
    || |||||| | | |   |||| ||| ||||||||   |||| ||||||||||| ||||||||||||||    
T  23087538 ct-ttgatgtgttgacacctctacaacgtctctttgatacctctatataaaggaatgaagacttgaaga 23087471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 17526586 - 17526636
Alignment:
Q  205 aggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttct 255  Q
    ||||||||||| | |||||||||||||| |||| || ||||||||||||||    
T  17526586 aggacattaaccatatcaagcaacaaatcaatgttgattgatcaagcttct 17526636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 256
Target Start/End: Complemental strand, 24619592 - 24619508
Alignment:
Q  172 tatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgatgtttgatcaagcttctc 256  Q
    ||||||||||||| ||  |||| ||||  ||  ||||| ||||| | |||||||||||||| |||| || |||||||||||||||    
T  24619592 tatcaaggaatggttttcaaattattcactcctaggacgttaaccatatcaagcaacaaatcaatgttgattgatcaagcttctc 24619508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 140 - 334
Target Start/End: Complemental strand, 49846 - 49653
Alignment:
Q  140 gtgtctcctttggaaaagaacggttaattctttatcaaggaatggattcaaaatcattctttcacaggacattaacgaaatcaagcaacaaattaatgat 239  Q
    |||||||||||| |||||||| ||| | || |||||||||||    ||||||||||||| |||| ||||||||||| | |||||||||||||| ||||||    
T  49846 gtgtctcctttgaaaaagaactgttgactccttatcaaggaaaaatttcaaaatcattccttcataggacattaaccatatcaagcaacaaatcaatgat 49747  T
Q  240 gtttgatcaagcttctcgaatgattctattgatgcgctagtactcttcaaagtctcttttcaacctttatataaaggattgaagacttgaagaaa 334  Q
      | |||||||||| || || || |||| ||||||      ||||||||| || |||||||||||| |||||||||||||| |||||||||||||    
T  49746 tctcgatcaagcttatctaacgactctaatgatgcatcgacactcttcaacgt-tcttttcaacctctatataaaggattggagacttgaagaaa 49653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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