View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17990_low_29 (Length: 348)

Name: NF17990_low_29
Description: NF17990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17990_low_29
NF17990_low_29
[»] chr5 (6 HSPs)
chr5 (1-91)||(26354861-26354951)
chr5 (7-89)||(9815130-9815212)
chr5 (237-289)||(38435285-38435337)
chr5 (144-195)||(26354995-26355046)
chr5 (126-195)||(9815036-9815105)
chr5 (298-329)||(26355149-26355180)
[»] chr3 (37 HSPs)
chr3 (126-326)||(20016251-20016449)
chr3 (1-75)||(19956194-19956268)
chr3 (1-83)||(26653251-26653333)
chr3 (1-68)||(19951238-19951305)
chr3 (126-286)||(20046031-20046191)
chr3 (1-75)||(19838503-19838577)
chr3 (7-89)||(19849086-19849168)
chr3 (1-75)||(20016135-20016209)
chr3 (7-89)||(20036543-20036625)
chr3 (126-194)||(19848990-19849058)
chr3 (126-194)||(20036653-20036721)
chr3 (126-182)||(26647016-26647072)
chr3 (1-89)||(26647097-26647185)
chr3 (126-329)||(19812145-19812348)
chr3 (231-329)||(26646875-26646973)
chr3 (126-195)||(19956083-19956152)
chr3 (1-77)||(19853620-19853696)
chr3 (126-194)||(19943720-19943788)
chr3 (126-182)||(30914655-30914711)
chr3 (246-329)||(19838249-19838332)
chr3 (126-330)||(19989386-19989590)
chr3 (1-88)||(20046217-20046304)
chr3 (126-195)||(19951123-19951192)
chr3 (1-77)||(19812385-19812461)
chr3 (126-194)||(19858072-19858140)
chr3 (1-77)||(19858180-19858256)
chr3 (250-329)||(19955940-19956019)
chr3 (1-83)||(19971713-19971795)
chr3 (1-78)||(24839908-24839985)
chr3 (1-73)||(19943828-19943900)
chr3 (126-194)||(24840024-24840092)
chr3 (127-174)||(19853532-19853579)
chr3 (8-73)||(19818666-19818731)
chr3 (126-195)||(19838392-19838461)
chr3 (7-78)||(19989629-19989700)
chr3 (141-191)||(26653155-26653205)
chr3 (226-330)||(19848851-19848955)
[»] chr1 (3 HSPs)
chr1 (1-77)||(1717319-1717395)
chr1 (231-330)||(1717078-1717177)
chr1 (127-195)||(1717213-1717281)
[»] chr8 (8 HSPs)
chr8 (4-75)||(22651830-22651901)
chr8 (126-195)||(22652138-22652207)
chr8 (237-327)||(22652249-22652339)
chr8 (1-83)||(22689589-22689671)
chr8 (22-93)||(11564089-11564160)
chr8 (26-89)||(22685642-22685705)
chr8 (126-194)||(22689705-22689773)
chr8 (126-174)||(22685730-22685778)
[»] chr4 (6 HSPs)
chr4 (126-195)||(6397788-6397857)
chr4 (128-195)||(6398260-6398327)
chr4 (1-88)||(6398355-6398442)
chr4 (247-286)||(6398169-6398208)
chr4 (1-55)||(6397673-6397727)
chr4 (229-286)||(6397891-6397948)
[»] chr6 (1 HSPs)
chr6 (237-290)||(34408248-34408301)
[»] chr7 (2 HSPs)
chr7 (3-75)||(12497316-12497388)
chr7 (3-75)||(12521181-12521253)


Alignment Details
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 26354861 - 26354951
Alignment:
Q  1 tatatgctagctaaaacagctggtgccaaagcaataggatttcctctagaaagatgtatagcaataggaaacaaagaaattttaaccaaca 91  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||| |||| |||||||    
T  26354861 tatatgctagctaaaacagccggtgccaaagcaatagaatttcctctagcaagatgaatagcaataggaaacaaagaacttttcaccaaca 26354951  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 7 - 89
Target Start/End: Complemental strand, 9815212 - 9815130
Alignment:
Q  7 ctagctaaaacagctggtgccaaagcaataggatttcctctagaaagatgtatagcaataggaaacaaagaaattttaaccaa 89  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||| |||||||||| |||| |||||    
T  9815212 ctagctaaaacagctggtgccaaagcaatagaatttcctctagcaagatgaatagcaatagaaaacaaagaacttttcaccaa 9815130  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 237 - 289
Target Start/End: Original strand, 38435285 - 38435337
Alignment:
Q  237 ttgtcttgcaaggatcaatttgttttccacctctctcatttcttggtcttcaa 289  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  38435285 ttgtcttgcaagtatcaatttcttttccacctctctcatttcttggtcttcaa 38435337  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 195
Target Start/End: Original strand, 26354995 - 26355046
Alignment:
Q  144 gaatgcttcatgttcaatttcactacctttatcaatgaacaaatccatccat 195  Q
    ||||||||||||||||| ||||||||||||||| ||||| | ||||||||||    
T  26354995 gaatgcttcatgttcaacttcactacctttatccatgaaaacatccatccat 26355046  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 195
Target Start/End: Complemental strand, 9815105 - 9815036
Alignment:
Q  126 tgacaaccaactagaaaggaatgcttcatgttcaatttcactacctttatcaatgaacaaatccatccat 195  Q
    |||||||||  ||| || ||| |||||||| ||||||||||||||||| || ||||| ||||||||||||    
T  9815105 tgacaaccacgtagcaatgaacgcttcatgctcaatttcactacctttgtcgatgaaaaaatccatccat 9815036  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 329
Target Start/End: Original strand, 26355149 - 26355180
Alignment:
Q  298 aaaataggatcaccaatgacagggtaaccccc 329  Q
    ||||||||||||||||||||||||||||||||    
T  26355149 aaaataggatcaccaatgacagggtaaccccc 26355180  T

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Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 126 - 326
Target Start/End: Original strand, 20016251 - 20016449
Alignment:
Q  126 tgacaaccaactagaaaggaatgcttcatgttcaatttcactacctttatcaatgaacaaatccatccatctcgatgtgtcagcaacactatttccactc 225  Q
    ||||| |||| ||| ||| |||||||||||||||||||||||||||||||||  ||||| |||||||||  | |||||||  ||   ||  | |   |      
T  20016251 tgacagccaagtagcaagaaatgcttcatgttcaatttcactacctttatcagcgaacatatccatccacattgatgtgtacgcgtgacgttgtttccga 20016350  T
Q  226 ttagtaagttgttgtcttgcaaggatcaatttgttttccacctctctcatttcttggtcttcaagggagataaaaataggatcaccaatgacagggtaac 325  Q
    ||||||||||| |||||||||||||||||||||||||| ||  ||||||||| |  ||||||||| ||||| |||| |||||| ||||||||||||||||    
T  20016351 ttagtaagttgctgtcttgcaaggatcaatttgttttctac--ctctcatttttgtgtcttcaagtgagatgaaaacaggatcgccaatgacagggtaac 20016448  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 19956268 - 19956194
Alignment:
Q  1 tatatgctagctaaaacagctggtgccaaagcaataggatttcctctagaaagatgtatagcaataggaaacaaa 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | | ||||||||||||||    
T  19956268 tatatgctagctaaaacagctggtgccaaagcaataggatttcctctagcaagatgaacaacaataggaaacaaa 19956194  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 26653333 - 26653251
Alignment:
Q  1 tatatgctagctaaaacagctggtgccaaagcaataggatttcctctagaaagatgtatagcaataggaaacaaagaaatttt 83  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||| |||||||||| ||||    
T  26653333 tatatactagctaaaacagctggtgccaaagcaataggatttcctctagcaagatgaacagcaatagaaaacaaagaactttt 26653251  T

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Target: chr3; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 19951305 - 19951238
Alignment:
Q  1 tatatgctagctaaaacagctggtgccaaagcaataggatttcctctagaaagatgtatagcaatagg 68  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||    
T  19951305 tatatgctagctaaaacagctggagccaaagcaataggatttcctctagcaagatgaatagcaatagg 19951238  T

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Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 126 - 286
Target Start/End: Complemental strand, 20046191 - 20046031
Alignment:
Q  126 tgacaaccaactagaaaggaatgcttcatgttcaatttcactacctttatcaatgaacaaatccatccatctcgatgtgtcagcaacactatttccactc 225  Q
    |||||||||| ||| |||||| ||||| ||||||||||||||||||||||| ||||||| ||||||||||   ||||||| ||||  || ||     ||     
T  20046191 tgacaaccaagtagtaaggaaggcttcgtgttcaatttcactacctttatcgatgaacatatccatccataatgatgtgtaagcatgaccatcgttccta 20046092  T
Q  226 ttagtaagttgttgtcttgcaaggatcaatttgttttccacctctctcatttcttggtctt 286  Q
    || ||||| || |  ||| || |||||||||| ||||||||||||||||||||||||||||    
T  20046091 tttgtaagctgcttcctttcatggatcaatttattttccacctctctcatttcttggtctt 20046031  T

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Target: chr3; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 19838577 - 19838503
Alignment:
Q  1 tatatgctagctaaaacagctggtgccaaagcaataggatttcctctagaaagatgtatagcaataggaaacaaa 75  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| | | |||| |||||||||    
T  19838577 tatatgctagctaaaacagctggtgccaaagcaatagaatttcctctagcaagatgaacaacaattggaaacaaa 19838503  T

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Target: chr3; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 7 - 89
Target Start/End: Complemental strand, 19849168 - 19849086
Alignment:
Q  7 ctagctaaaacagctggtgccaaagcaataggatttcctctagaaagatgtatagcaataggaaacaaagaaattttaaccaa 89  Q
    |||||||||||||| ||||| ||||||||| |||||||||||| ||||| || ||||||||||||||||||| |||| |||||    
T  19849168 ctagctaaaacagcaggtgctaaagcaatacgatttcctctagcaagatatacagcaataggaaacaaagaacttttcaccaa 19849086  T

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Target: chr3; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 20016135 - 20016209
Alignment:
Q  1 tatatgctagctaaaacagctggtgccaaagcaataggatttcctctagaaagatgtatagcaataggaaacaaa 75  Q
    ||||||||||| || |||||||||||||||||||||||||||| ||||| |||||| |||||||| |||||||||    
T  20016135 tatatgctagccaagacagctggtgccaaagcaataggatttcgtctagcaagatgaatagcaatcggaaacaaa 20016209  T

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Target: chr3; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 7 - 89
Target Start/End: Original strand, 20036543 - 20036625
Alignment:
Q  7 ctagctaaaacagctggtgccaaagcaataggatttcctctagaaagatgtatagcaataggaaacaaagaaattttaaccaa 89  Q
    |||||||||||||| ||||| ||||||||| |||||||||||| ||||| || ||||||||||||||||||| |||| |||||    
T  20036543 ctagctaaaacagcaggtgctaaagcaatacgatttcctctagcaagatatacagcaataggaaacaaagaacttttcaccaa 20036625  T

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Target: chr3; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 19849058 - 19848990
Alignment:
Q  126 tgacaaccaactagaaaggaatgcttcatgttcaatttcactacctttatcaatgaacaaatccatcca 194  Q
    |||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||| | |||||||||    
T  19849058 tgacaaccaagtagcaagaaatgcttcatgttcaatttcactacctttatcaatgaaaatatccatcca 19848990  T

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Target: chr3; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 20036653 - 20036721
Alignment:
Q  126 tgacaaccaactagaaaggaatgcttcatgttcaatttcactacctttatcaatgaacaaatccatcca 194  Q
    |||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||| | |||||||||    
T  20036653 tgacaaccaagtagcaagaaatgcttcatgttcaatttcactacctttatcaatgaaaatatccatcca 20036721  T

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Target: chr3; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 26647072 - 26647016
Alignment:
Q  126 tgacaaccaactagaaaggaatgcttcatgttcaatttcactacctttatcaatgaa 182  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  26647072 tgacaaccaagtagaaaggaatgcttcatgttcaatttcactacctttatccatgaa 26647016  T

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Target: chr3; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 26647185 - 26647097
Alignment:
Q  1 tatatgctagctaaaacagctggtgccaaagcaataggatttcctctagaaagatgtatagcaataggaaacaaagaaattttaaccaa 89  Q
    |||| ||||||||||||||| |||||||||||||| ||||| ||||||| |||||| | |||||||||||||||| || |||| |||||    
T  26647185 tataagctagctaaaacagccggtgccaaagcaattggattccctctagcaagatgaacagcaataggaaacaaacaacttttcaccaa 26647097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 329
Target Start/End: Complemental strand, 19812348 - 19812145
Alignment:
Q  126 tgacaaccaactagaaaggaatgcttcatgttcaatttcactacctttatcaatgaacaaatccatccatctcgatgtgtcagcaacactatttccactc 225  Q
    |||||||||| ||| ||| |||||||||||||||||||||||||||||| ||| ||| | ||  |||||| | ||||||  |||   ||  |||  ||||    
T  19812348 tgacaaccaagtagcaagaaatgcttcatgttcaatttcactacctttaccaacgaaaatattgatccattttgatgtggtagccttaccttttttactc 19812249  T
Q  226 ttagtaagttgttgtcttgcaaggatcaatttgttttccacctctctcatttcttggtcttcaagggagataaaaataggatcaccaatgacagggtaac 325  Q
    |    | |||   ||||||||||||| |  || |||||||||||||||||||||||||||| ||    | ||||||||||||||||||||| ||||||||    
T  19812248 tgccaaggtttccgtcttgcaaggatgagcttcttttccacctctctcatttcttggtcttgaactttggtaaaaataggatcaccaatgatagggtaac 19812149  T
Q  326 cccc 329  Q
    ||||    
T  19812148 cccc 19812145  T

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Target: chr3; HSP #15
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 231 - 329
Target Start/End: Complemental strand, 26646973 - 26646875
Alignment:
Q  231 aagttgttgtcttgcaaggatcaatttgttttccacctctctcatttcttggtcttcaagggagataaaaataggatcaccaatgacagggtaaccccc 329  Q
    |||||| | |||||||||||| | ||| |||||||||||||||||||||||||||||||| || || |||| |||||| ||||| | ||| ||||||||    
T  26646973 aagttgctctcttgcaaggatgagtttcttttccacctctctcatttcttggtcttcaagtgaaatgaaaacaggatccccaataataggataaccccc 26646875  T

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Target: chr3; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 126 - 195
Target Start/End: Complemental strand, 19956152 - 19956083
Alignment:
Q  126 tgacaaccaactagaaaggaatgcttcatgttcaatttcactacctttatcaatgaacaaatccatccat 195  Q
    |||||||||| ||| ||| || ||||||||||||||||||||||||||||||||||| | ||||||||||    
T  19956152 tgacaaccaagtagcaagaaaagcttcatgttcaatttcactacctttatcaatgaaaatatccatccat 19956083  T

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Target: chr3; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 19853696 - 19853620
Alignment:
Q  1 tatatgctagctaaaacagctggtgccaaagcaataggatttcctctagaaagatgtatagcaataggaaacaaaga 77  Q
    |||| |||||| |||||||| |||||||||||||||| ||| ||||||| |||| | ||||||||||||||||||||    
T  19853696 tataagctagccaaaacagcaggtgccaaagcaatagtattacctctagcaagacgaatagcaataggaaacaaaga 19853620  T

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Target: chr3; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 19943788 - 19943720
Alignment:
Q  126 tgacaaccaactagaaaggaatgcttcatgttcaatttcactacctttatcaatgaacaaatccatcca 194  Q
    |||||||||| ||| ||| |||||||||||||||||||||||||||||||| ||||| | |||||||||    
T  19943788 tgacaaccaagtagcaagaaatgcttcatgttcaatttcactacctttatcgatgaaaatatccatcca 19943720  T

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Target: chr3; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 30914711 - 30914655
Alignment:
Q  126 tgacaaccaactagaaaggaatgcttcatgttcaatttcactacctttatcaatgaa 182  Q
    |||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||    
T  30914711 tgacaaccaagtagtaaggaatgcttcatgttcaatttcactaactttatcaatgaa 30914655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 246 - 329
Target Start/End: Complemental strand, 19838332 - 19838249
Alignment:
Q  246 aaggatcaatttgttttccacctctctcatttcttggtcttcaagggagataaaaataggatcaccaatgacagggtaaccccc 329  Q
    |||||||||||||||||||||||||||||||||||||||||  |    | | |||| || ||||||||||||||||||||||||    
T  19838332 aaggatcaatttgttttccacctctctcatttcttggtctttgacttcggtgaaaacagaatcaccaatgacagggtaaccccc 19838249  T

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Target: chr3; HSP #21
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 126 - 330
Target Start/End: Complemental strand, 19989590 - 19989386
Alignment:
Q  126 tgacaaccaactagaaaggaatgcttcatgttcaatttcactacctttatcaatgaacaaatccatccatctcgatgtgtcagcaaca-ct-atttccac 223  Q
    |||||||||| ||| ||| |||||||||||||||| |||| |||||||||||||||| | ||||||||||  |  |||   ||||  | || | ||  |     
T  19989590 tgacaaccaagtagcaagaaatgcttcatgttcaagttcattacctttatcaatgaaaacatccatccatacccttgttctagcattagctgactt--ag 19989493  T
Q  224 tcttagtaagttgttgtcttgcaaggatcaatttgttttccacctctctcatttcttggtcttcaagggagataaaaataggatcaccaatgacagggta 323  Q
    |||||  |||||| |||||| ||||||||||||  |||||||||||| ||||||||||||||| ||| |  || |||| |||||||||||  | ||||||    
T  19989492 tcttataaagttgctgtctttcaaggatcaattccttttccacctctttcatttcttggtcttgaagtgtaatgaaaacaggatcaccaagaatagggta 19989393  T
Q  324 accccct 330  Q
    |||||||    
T  19989392 accccct 19989386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 20046304 - 20046217
Alignment:
Q  1 tatatgctagctaaaacagctggtgccaaagcaataggatttcctctagaaagatgtatagcaataggaaacaaagaaattttaacca 88  Q
    ||||||||| | |||||||| |||||||||||||| ||||||||||||| |||||  |||||||||| ||||||| || |||| ||||    
T  20046304 tatatgctacccaaaacagcaggtgccaaagcaattggatttcctctagcaagattaatagcaatagaaaacaaacaatttttcacca 20046217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 126 - 195
Target Start/End: Complemental strand, 19951192 - 19951123
Alignment:
Q  126 tgacaaccaactagaaaggaatgcttcatgttcaatttcactacctttatcaatgaacaaatccatccat 195  Q
    |||||||||| ||  |||||| |||||||||||||||||||||||||||||| |||| | ||||||||||    
T  19951192 tgacaaccaagtaacaaggaaggcttcatgttcaatttcactacctttatcagtgaaaatatccatccat 19951123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 19812461 - 19812385
Alignment:
Q  1 tatatgctagctaaaacagctggtgccaaagcaataggatttcctctagaaagatgtatagcaataggaaacaaaga 77  Q
    ||||||||||| || |||||||||||||||||||||||||  ||||||| |||| | ||||| || |||||||||||    
T  19812461 tatatgctagccaagacagctggtgccaaagcaataggataccctctagcaagaagaatagcgatcggaaacaaaga 19812385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 19858140 - 19858072
Alignment:
Q  126 tgacaaccaactagaaaggaatgcttcatgttcaatttcactacctttatcaatgaacaaatccatcca 194  Q
    |||||||||| ||| ||| ||||||||||| |||||||||||||||||||| ||||| | |||||||||    
T  19858140 tgacaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatatccatcca 19858072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 19858256 - 19858180
Alignment:
Q  1 tatatgctagctaaaacagctggtgccaaagcaataggatttcctctagaaagatgtatagcaataggaaacaaaga 77  Q
    |||| |||||| |||||||| ||||||||||| |||| ||||||||||| ||||   ||||||||||||||||||||    
T  19858256 tataagctagccaaaacagcaggtgccaaagcgatagtatttcctctagcaagaccaatagcaataggaaacaaaga 19858180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 250 - 329
Target Start/End: Complemental strand, 19956019 - 19955940
Alignment:
Q  250 atcaatttgttttccacctctctcatttcttggtcttcaagggagataaaaataggatcaccaatgacagggtaaccccc 329  Q
    |||||||||||||||||||||||||||||||||||||  |    | | |||| || ||||||||||||||||||||||||    
T  19956019 atcaatttgttttccacctctctcatttcttggtctttgacttcggtgaaaacagaatcaccaatgacagggtaaccccc 19955940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 19971795 - 19971713
Alignment:
Q  1 tatatgctagctaaaacagctggtgccaaagcaataggatttcctctagaaagatgtatagcaataggaaacaaagaaatttt 83  Q
    |||| |||||| ||||||| ||||||||||||||||| ||| ||||||   | ||| ||||||||||||||||||||| ||||    
T  19971795 tataagctagccaaaacagttggtgccaaagcaatagtattgcctctaaccaaatgaatagcaataggaaacaaagaactttt 19971713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 24839908 - 24839985
Alignment:
Q  1 tatatgctagctaaaacagctggtgccaaagcaataggatttcctctagaaagatgtatagcaataggaaacaaagaa 78  Q
    |||| |||||| |||||||| |||||||||| ||||||||| |||||||  ||||| | ||||| |||||||||||||    
T  24839908 tataagctagccaaaacagcaggtgccaaagaaataggattccctctagctagatgaacagcaacaggaaacaaagaa 24839985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 19943900 - 19943828
Alignment:
Q  1 tatatgctagctaaaacagctggtgccaaagcaataggatttcctctagaaagatgtatagcaataggaaaca 73  Q
    |||| |||||| |||||||| ||||||||||| |||||| | ||||||| |||||| | ||||||||||||||    
T  19943900 tataagctagccaaaacagcaggtgccaaagccataggaatccctctagcaagatgaacagcaataggaaaca 19943828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 24840024 - 24840092
Alignment:
Q  126 tgacaaccaactagaaaggaatgcttcatgttcaatttcactacctttatcaatgaacaaatccatcca 194  Q
    |||||||||| ||| ||| ||||||||||| |||| ||||||||||||||| ||||| | |||||||||    
T  24840024 tgacaaccaagtagcaagaaatgcttcatgctcaacttcactacctttatcgatgaaaatatccatcca 24840092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 19853579 - 19853532
Alignment:
Q  127 gacaaccaactagaaaggaatgcttcatgttcaatttcactaccttta 174  Q
    ||||||||| ||| ||| ||||||||||||||||||||||||||||||    
T  19853579 gacaaccaagtagcaagaaatgcttcatgttcaatttcactaccttta 19853532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 19818731 - 19818666
Alignment:
Q  8 tagctaaaacagctggtgccaaagcaataggatttcctctagaaagatgtatagcaataggaaaca 73  Q
    |||| |||||||| |||||||||||||||||||| ||||||| |||||  | ||||| ||||||||    
T  19818731 tagccaaaacagccggtgccaaagcaataggattccctctagcaagattaacagcaacaggaaaca 19818666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 195
Target Start/End: Complemental strand, 19838461 - 19838392
Alignment:
Q  126 tgacaaccaactagaaaggaatgcttcatgttcaatttcactacctttatcaatgaacaaatccatccat 195  Q
    |||||||||| |||  || || ||||||||||||||||| ||||||||||| ||||| | ||||||||||    
T  19838461 tgacaaccaagtagctagaaaagcttcatgttcaatttcgctacctttatcgatgaaaatatccatccat 19838392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 19989700 - 19989629
Alignment:
Q  7 ctagctaaaacagctggtgccaaagcaataggatttcctctagaaagatgtatagcaataggaaacaaagaa 78  Q
    ||||| ||||| || ||||| || ||||||||||||||||||| |||||| ||||||| | |||| ||||||    
T  19989700 ctagccaaaactgcaggtgctaatgcaataggatttcctctagcaagatgaatagcaacacgaaagaaagaa 19989629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 191
Target Start/End: Complemental strand, 26653205 - 26653155
Alignment:
Q  141 aaggaatgcttcatgttcaatttcactacctttatcaatgaacaaatccat 191  Q
    ||||||||| ||||||||||||||||||||||  |||||||| | ||||||    
T  26653205 aaggaatgcatcatgttcaatttcactaccttagtcaatgaaaatatccat 26653155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 330
Target Start/End: Complemental strand, 19848955 - 19848851
Alignment:
Q  226 ttagtaagttgttgtcttgcaaggatcaatttgttttccacctctctcatttcttggtcttcaagggagataaaaataggatcaccaatgacagggtaac 325  Q
    |||||||||||||||||||||| ||| |  || | ||| | |||| ||||||||||||| | ||| ||  | |||| |||||||||||  ||||| ||||    
T  19848955 ttagtaagttgttgtcttgcaatgatgagcttttcttcaatctctttcatttcttggtcatgaagtgaagtgaaaacaggatcaccaagaacaggataac 19848856  T
Q  326 cccct 330  Q
    |||||    
T  19848855 cccct 19848851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 1717395 - 1717319
Alignment:
Q  1 tatatgctagctaaaacagctggtgccaaagcaataggatttcctctagaaagatgtatagcaataggaaacaaaga 77  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| |||||| | ||||||||||||||||||    
T  1717395 tatatgctagctaaaacagccggtgccaaagcaataggatttcctctagcaagatgaacagcaataggaaacaaaga 1717319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 231 - 330
Target Start/End: Complemental strand, 1717177 - 1717078
Alignment:
Q  231 aagttgttgtcttgcaaggatcaatttgttttccacctctctcatttcttggtcttcaagggagataaaaataggatcaccaatgacagggtaaccccct 330  Q
    |||||||| |||||||||||||||||| | ||| | |||| ||||||||||||||||||| || |  |||| |||||||||||||||||||||| |||||    
T  1717177 aagttgttctcttgcaaggatcaatttatcttcaatctctttcatttcttggtcttcaagcgaaacgaaaacaggatcaccaatgacagggtaatcccct 1717078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 1717281 - 1717213
Alignment:
Q  127 gacaaccaactagaaaggaatgcttcatgttcaatttcactacctttatcaatgaacaaatccatccat 195  Q
    ||||||||| ||| ||| ||||||||||||||||||||||||||||||||||  || | ||||||||||    
T  1717281 gacaaccaagtagcaagaaatgcttcatgttcaatttcactacctttatcaacaaaaacatccatccat 1717213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 22651830 - 22651901
Alignment:
Q  4 atgctagctaaaacagctggtgccaaagcaataggatttcctctagaaagatgtatagcaataggaaacaaa 75  Q
    |||||||| |||||||||||||| |||||||||||||||||||||| |||||| | ||||||||||||||||    
T  22651830 atgctagccaaaacagctggtgcaaaagcaataggatttcctctagcaagatgaacagcaataggaaacaaa 22651901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 22652138 - 22652207
Alignment:
Q  126 tgacaaccaactagaaaggaatgcttcatgttcaatttcactacctttatcaatgaacaaatccatccat 195  Q
    |||||||||| ||| |||||| ||||||||||||||||||||||||||||| ||||| | ||||||||||    
T  22652138 tgacaaccaagtagcaaggaacgcttcatgttcaatttcactacctttatcgatgaaaatatccatccat 22652207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 237 - 327
Target Start/End: Original strand, 22652249 - 22652339
Alignment:
Q  237 ttgtcttgcaaggatcaatttgttttccacctctctcatttcttggtcttcaagggagataaaaataggatcaccaatgacagggtaaccc 327  Q
    |||||||||||||||||  || ||||||||||||||||| | ||  |||||||| ||||| |||| |||||||||||  ||||||||||||    
T  22652249 ttgtcttgcaaggatcatcttcttttccacctctctcatcttttcatcttcaagtgagatgaaaacaggatcaccaagaacagggtaaccc 22652339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 22689589 - 22689671
Alignment:
Q  1 tatatgctagctaaaacagctggtgccaaagcaataggatttcctctagaaagatgtatagcaataggaaacaaagaaatttt 83  Q
    ||||||||||| |||||||| |||||||||||||||| ||| |||||||  ||||| |||| ||||| |||||||||| ||||    
T  22689589 tatatgctagccaaaacagcaggtgccaaagcaatagtattgcctctagccagatgaatagaaatagtaaacaaagaactttt 22689671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 93
Target Start/End: Original strand, 11564089 - 11564160
Alignment:
Q  22 ggtgccaaagcaataggatttcctctagaaagatgtatagcaataggaaacaaagaaattttaaccaacaag 93  Q
    ||||| ||||||||||| |||||||||| |||||| | ||||||||||||||||||| |||| | |||||||    
T  11564089 ggtgctaaagcaataggttttcctctagcaagatgaacagcaataggaaacaaagaacttttgatcaacaag 11564160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 22685642 - 22685705
Alignment:
Q  26 ccaaagcaataggatttcctctagaaagatgtatagcaataggaaacaaagaaattttaaccaa 89  Q
    |||||||||||||||| ||||||| |||||| |||||||| ||||||| |||| |||| |||||    
T  22685642 ccaaagcaataggattccctctagcaagatgaatagcaatcggaaacatagaagttttcaccaa 22685705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 22689705 - 22689773
Alignment:
Q  126 tgacaaccaactagaaaggaatgcttcatgttcaatttcactacctttatcaatgaacaaatccatcca 194  Q
    |||||||||| ||| ||| |||||||||||||||| |||| |||| ||||| ||||| | |||||||||    
T  22689705 tgacaaccaagtagcaagaaatgcttcatgttcaaattcattaccattatcgatgaaaacatccatcca 22689773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 22685730 - 22685778
Alignment:
Q  126 tgacaaccaactagaaaggaatgcttcatgttcaatttcactaccttta 174  Q
    ||||||||||  || ||| ||||||||||| ||||||||||||||||||    
T  22685730 tgacaaccaagcagcaagaaatgcttcatgctcaatttcactaccttta 22685778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 6397788 - 6397857
Alignment:
Q  126 tgacaaccaactagaaaggaatgcttcatgttcaatttcactacctttatcaatgaacaaatccatccat 195  Q
    |||||||||  ||| |||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  6397788 tgacaaccaggtagcaaggaaggcttcatgttcaatttcactacctttatcgatgaacatatccatccat 6397857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 195
Target Start/End: Complemental strand, 6398327 - 6398260
Alignment:
Q  128 acaaccaactagaaaggaatgcttcatgttcaatttcactacctttatcaatgaacaaatccatccat 195  Q
    |||||||| ||| |||||| ||||||||||||||||||||||||||||  || |||| ||||||||||    
T  6398327 acaaccaattagcaaggaaggcttcatgttcaatttcactacctttatagataaacatatccatccat 6398260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 6398442 - 6398355
Alignment:
Q  1 tatatgctagctaaaacagctggtgccaaagcaataggatttcctctagaaagatgtatagcaataggaaacaaagaaattttaacca 88  Q
    |||||||||||||||||||||||||||||| | || |||||||||||||  ||||  | |||||||| ||||||| || |||| ||||    
T  6398442 tatatgctagctaaaacagctggtgccaaaccgattggatttcctctagcgagattaacagcaatagaaaacaaacaacttttcacca 6398355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 286
Target Start/End: Complemental strand, 6398208 - 6398169
Alignment:
Q  247 aggatcaatttgttttccacctctctcatttcttggtctt 286  Q
    ||||||||||||||||||||||||||||||| || |||||    
T  6398208 aggatcaatttgttttccacctctctcatttattagtctt 6398169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 6397673 - 6397727
Alignment:
Q  1 tatatgctagctaaaacagctggtgccaaagcaataggatttcctctagaaagat 55  Q
    |||||| |||| ||||||| ||||||||||||||| |||||| |||||| |||||    
T  6397673 tatatgatagccaaaacagatggtgccaaagcaattggattttctctagcaagat 6397727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 286
Target Start/End: Original strand, 6397891 - 6397948
Alignment:
Q  229 gtaagttgttgtcttgcaaggatcaatttgttttccacctctctcatttcttggtctt 286  Q
    |||||||| | |||| | ||||||||||| |||||||||| || ||||||||||||||    
T  6397891 gtaagttgctttctttctaggatcaatttattttccacctatcacatttcttggtctt 6397948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 290
Target Start/End: Original strand, 34408248 - 34408301
Alignment:
Q  237 ttgtcttgcaaggatcaatttgttttccacctctctcatttcttggtcttcaag 290  Q
    ||||||||| |||||||| || | ||||||||||| ||||||||| ||||||||    
T  34408248 ttgtcttgctaggatcaacttctgttccacctctcccatttcttgatcttcaag 34408301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 12497388 - 12497316
Alignment:
Q  3 tatgctagctaaaacagctggtgccaaagcaataggatttcctctagaaagatgtatagcaataggaaacaaa 75  Q
    ||||||||| ||||||||||| | ||||| |||  |||||| ||||| |||||  |||||||||| |||||||    
T  12497388 tatgctagccaaaacagctggcggcaaagtaatttgatttcttctagcaagattaatagcaatagaaaacaaa 12497316  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 12521253 - 12521181
Alignment:
Q  3 tatgctagctaaaacagctggtgccaaagcaataggatttcctctagaaagatgtatagcaataggaaacaaa 75  Q
    ||||||||| ||||||||||| | ||||| |||  |||||| ||||| |||||  |||||||||| |||||||    
T  12521253 tatgctagccaaaacagctggcggcaaagtaatttgatttcttctagcaagattaatagcaatagaaaacaaa 12521181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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