View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17990_low_3 (Length: 669)
Name: NF17990_low_3
Description: NF17990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17990_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 423 - 609
Target Start/End: Original strand, 2928431 - 2928618
Alignment:
| Q |
423 |
gctcagaaaattctaaaggtccatggtgattctagtatgattgctgattgcagggttgtatcaac---tagtctgtcaatctctggtgtactgtttcggc |
519 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||||| | ||| ||| ||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
2928431 |
gctcagaaaattcaaaaggtccatggtgattcaagtatgattgcag------gggctgtttcaacaactagtctgtcaatctctggtgtactgtttgggc |
2928524 |
T |
|
| Q |
520 |
agtttttcagtttcttagatttgtgtattggagctgttctattgcgtttttcgtagta----taagttagttgatcgggtacctttgaggtttg |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||| | |||| |||||||| |||||||||||||||| |
|
|
| T |
2928525 |
ggtttttcagtttcttagatttgtgtattggagttgttctattttgtttttcttagtatcagtcagttggttgatcgagtacctttgaggtttg |
2928618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 530 - 586
Target Start/End: Complemental strand, 3002773 - 3002717
Alignment:
| Q |
530 |
tttcttagatttgtgtattggagctgttctattgcgtttttcgtagtataagttagt |
586 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
3002773 |
tttcttatatttgtgtattggagctgttctattgcgtttttcttagtatcagttagt |
3002717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 5e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 30 - 190
Target Start/End: Complemental strand, 37200727 - 37200567
Alignment:
| Q |
30 |
aggactaaatgatttaattactcttcaagcaagtggctgttgaatcctttagtttgtttgggaacggttagtagtgtttaggtgctgggtggttcctttt |
129 |
Q |
| |
|
||||||||| ||||| |||||||| ||| |||||| |||||||| ||||||||||| |||| |||||| |||||||||||| ||||| ||| ||||| |
|
|
| T |
37200727 |
aggactaaagtatttagttactctttaagggagtggccgttgaatcttttagtttgttggggagcggttaatagtgtttaggtactgggctgttactttt |
37200628 |
T |
|
| Q |
130 |
gtcatatcattatccggcttcagcttttcatctgtgaatgcagtcttctgatcttgtgcag |
190 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||| | |||||| | |||||||||||||| |
|
|
| T |
37200627 |
gtcatatcattatttggcttcagtttttcatctgtcagtgcagtatcctgatcttgtgcag |
37200567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 523 - 563
Target Start/End: Complemental strand, 37200292 - 37200252
Alignment:
| Q |
523 |
ttttcagtttcttagatttgtgtattggagctgttctattg |
563 |
Q |
| |
|
||||||||||||||| |||||||||||| |||| ||||||| |
|
|
| T |
37200292 |
ttttcagtttcttagttttgtgtattggggctgctctattg |
37200252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University