View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17990_low_30 (Length: 333)
Name: NF17990_low_30
Description: NF17990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17990_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 91 - 214
Target Start/End: Original strand, 34589936 - 34590059
Alignment:
| Q |
91 |
ttgacccatgtaaccattgttgaaaagattctaagatctttaacataaagatttaattatgttgttttctcaatagaagaattgaatgatgcaactacga |
190 |
Q |
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| T |
34589936 |
ttgacccatataaccattgttgaaaagattctaagatctttaacataaagatttaattatgttgttttctcaatagaagaattgaatgatgcaactacga |
34590035 |
T |
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| Q |
191 |
tgacaattgacgagttacaaagta |
214 |
Q |
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| T |
34590036 |
tgacaattgacgagttacaaagta |
34590059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 34589799 - 34589890
Alignment:
| Q |
1 |
tctaataaggtgaagagagatcaacttcgagctctatgcgaagaatttgagaatcttagcatgaagattgatgaatctctaaaggaatactt |
92 |
Q |
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| T |
34589799 |
tctaataaggtgaagagagatcaacttcgagctctatgcgaagaatttgagaatcttagcatgaagattgatgaatctctaaaggaatactt |
34589890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 34590700 - 34590740
Alignment:
| Q |
271 |
gtcactaataatgaaatgagcaacacaaacaaggtaaccta |
311 |
Q |
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| T |
34590700 |
gtcactaataatgaaatgagcaacacaaacaaggtaaccta |
34590740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 242
Target Start/End: Original strand, 34590668 - 34590701
Alignment:
| Q |
209 |
aaagtatacaagttgaataatcaaaacaatgggt |
242 |
Q |
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| T |
34590668 |
aaagcatacaagttgaataatcaaaacaatgggt |
34590701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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