View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17990_low_34 (Length: 293)

Name: NF17990_low_34
Description: NF17990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17990_low_34
NF17990_low_34
[»] chr3 (2 HSPs)
chr3 (5-275)||(39396884-39397158)
chr3 (45-86)||(24486224-24486265)
[»] chr1 (1 HSPs)
chr1 (231-275)||(23895010-23895055)
[»] chr7 (1 HSPs)
chr7 (53-87)||(47270731-47270765)
[»] chr2 (1 HSPs)
chr2 (45-86)||(375113-375154)
[»] chr6 (1 HSPs)
chr6 (43-79)||(6865363-6865399)


Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 5 - 275
Target Start/End: Original strand, 39396884 - 39397158
Alignment:
Q  5 tgtcgaagaatatcatcttttctagtagtgtgcagaagtggagttaaaatcctctctatttgttaaaaataaatggataatgcaacactttgagggaaac 104  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  39396884 tgtcgaaaaagatcatcttttctagtagtgtgcagaagtggagttaaaatcctctctatttgttaaaaataaatggataatgcaacactttgagggacac 39396983  T
Q  105 ttgcaaaactttgagtatgtactgatattatcctatttgttgattatgttaaagaaacttgattgggtttgcacaaggaaaggtttgttgctgtgtggac 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39396984 ttgcaaaactttgagtatgtactgatattatcctatttgttgattatgttaaagaaacttgattgggtttgcacaaggaaaggtttgttgctgtgtggac 39397083  T
Q  205 caatcaagtgatggatta----nnnnnnnnatcaaagcactaaaatgatataaaaaggccaggagatgtctgaac 275  Q
    ||||||||||||| ||||            |||||||||||||||||||||||||||||||||||||| ||||||    
T  39397084 caatcaagtgatgcattattttatttttttatcaaagcactaaaatgatataaaaaggccaggagatgcctgaac 39397158  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 24486224 - 24486265
Alignment:
Q  45 gagttaaaatcctctctatttgttaaaaataaatggataatg 86  Q
    |||||||||||||||||||||| |||||||||||| ||||||    
T  24486224 gagttaaaatcctctctatttgctaaaaataaatgaataatg 24486265  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 231 - 275
Target Start/End: Complemental strand, 23895055 - 23895010
Alignment:
Q  231 atcaaagcact-aaaatgatataaaaaggccaggagatgtctgaac 275  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||    
T  23895055 atcaaagcacttaaaatgatataaaaaagccaggagatgtctgaac 23895010  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 47270765 - 47270731
Alignment:
Q  53 atcctctctatttgttaaaaataaatggataatgc 87  Q
    |||||||||||||||| ||||||||||||||||||    
T  47270765 atcctctctatttgtttaaaataaatggataatgc 47270731  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 375154 - 375113
Alignment:
Q  45 gagttaaaatcctctctatttgttaaaaataaatggataatg 86  Q
    |||||||||||||||| ||||| |||||||| ||||||||||    
T  375154 gagttaaaatcctctccatttgctaaaaatagatggataatg 375113  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 6865399 - 6865363
Alignment:
Q  43 tggagttaaaatcctctctatttgttaaaaataaatg 79  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  6865399 tggagttaacatcctctctatttgctaaaaataaatg 6865363  T

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