View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17990_low_36 (Length: 273)
Name: NF17990_low_36
Description: NF17990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17990_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 52 - 188
Target Start/End: Original strand, 42141494 - 42141630
Alignment:
| Q |
52 |
tcactcactcactctcctccaacacatttcatttaactttaatctttgtatccattattattccccttcaactacctataagtatagcccccctaaactt |
151 |
Q |
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| T |
42141494 |
tcactcactcactctcctccaacacatttcatttaacttcaatctttgtatccattattattccccttcaactacctataagtatagcccccctaaactt |
42141593 |
T |
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| Q |
152 |
gtaatgtaaataatgctgctagtgcctcatatatata |
188 |
Q |
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| T |
42141594 |
gtaatgtaaataatgctgctagtgctacatatatata |
42141630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 180 - 273
Target Start/End: Original strand, 42141660 - 42141753
Alignment:
| Q |
180 |
atatatataattccaactatatactactattaaaccctcgttactagcttatactaataaaattcaattattctcttcaactacctatagtatt |
273 |
Q |
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| T |
42141660 |
atatatataattccaactatatactactattaaacactcgttactagcttatactaataaaattcaattattctcttcaactacctataatatt |
42141753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 50
Target Start/End: Original strand, 42141445 - 42141476
Alignment:
| Q |
19 |
aatggtcccctactataccttacgcaacctaa |
50 |
Q |
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| T |
42141445 |
aatggtcccctactataccttacgcaacctaa |
42141476 |
T |
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