View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17990_low_4 (Length: 656)
Name: NF17990_low_4
Description: NF17990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17990_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 14 - 306
Target Start/End: Complemental strand, 37823888 - 37823611
Alignment:
| Q |
14 |
cataggcaaaacttaatttttaaacttgagaaatgaaaattacttgattcaaaggtttgttaaataataaataaaaatgctaccataatgttggctcatt |
113 |
Q |
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| T |
37823888 |
cataggcaaaacttaatttttaaacttgagaaatgaaaattacttgattcaaaggtttgttaaataataaataaaaatgctaccataatgttggctcatt |
37823789 |
T |
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| Q |
114 |
agttgtgtcatgttaaactaaactattcagccttcgctaaaacaggtttaacaaaaacagcagtgcttggaagcagagtcgggttcaatggtctgtttaa |
213 |
Q |
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| T |
37823788 |
agttgtgtcatgttaaactaaactattcagccttc---------------actaaaacagcagtgcttggaagcagagtcgggttcaatggtctgtttat |
37823704 |
T |
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| Q |
214 |
cactagcttagaagaaaaaagcaatgcaagtttggtcagtgaccgttctttttcctaagagatgtgcaaggtccaagagctccatagattttg |
306 |
Q |
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| T |
37823703 |
cactagcttggaagaaaaaagcaatgcaagtttggtcagtgaccgttctttttcctaagagatgtgcaaggtccaagagctccatagattttg |
37823611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 365 - 596
Target Start/End: Complemental strand, 37823386 - 37823155
Alignment:
| Q |
365 |
gtcattgtgggttctcattgattgccagaaatcagagtccaaaaccagtccaggttcagaagcgaagaccatgattctagagccagtattcacaaaacaa |
464 |
Q |
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| T |
37823386 |
gtcattgtgggttctcattgattgccagaaatcagagtccaaaaccagtccaggtccagaagcgaagaccatgattctagagccagtattcacaaaacaa |
37823287 |
T |
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| Q |
465 |
cactctaagagtccaagggctgctgaaattgcaactcccgtggaccggtttctggacttgaagttatacgtagaatgaatatcttcaattgcaacagtga |
564 |
Q |
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| T |
37823286 |
cactctaagagtccaagggctgctgaaaatgcaactcccgtggaccggtttctggacttgaagttatacgtagaatgaatatcttcaattgcaacagtga |
37823187 |
T |
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| Q |
565 |
tccctgctttggaagaggctgtgtttgtccag |
596 |
Q |
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| T |
37823186 |
tccctgctttggaacaggctgtgtttgtccag |
37823155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 37823435 - 37823397
Alignment:
| Q |
312 |
ttagcaatctgcttatataaactgcaagatgtccattgc |
350 |
Q |
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| T |
37823435 |
ttagcaatttgcttgtataaactgcaagatgtccattgc |
37823397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 5e-39; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 365 - 565
Target Start/End: Original strand, 47597850 - 47598074
Alignment:
| Q |
365 |
gtcattgtgggttctcattgattgccagaaatcagagtccaaaaccagtccaggttca---------------gaagcgaagaccatgattctagagcca |
449 |
Q |
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| T |
47597850 |
gtcattgtgggttctcatggattgccggaaatcagagtccacaaccagtccaggtccaagagtcgcaggcccagaagtgaagaccatgattctagagccg |
47597949 |
T |
|
| Q |
450 |
gtattcacaaaacaacactctaagagtccaagggctgctgaaattgcaactcccgtggac---------cggtttctggacttgaagttatacgtagaat |
540 |
Q |
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| T |
47597950 |
gtatttacaaaacaacactctaaaagtccaagggcagctgaaattgcagctccagtggacctcgggggacggtttccggacctgaagttatacgaagaat |
47598049 |
T |
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| Q |
541 |
gaatatcttcaattgcaacagtgat |
565 |
Q |
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| T |
47598050 |
gaatatcttcaattgcagcagtgat |
47598074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 564 - 642
Target Start/End: Original strand, 47598107 - 47598186
Alignment:
| Q |
564 |
atccctgctttggaagaggctgtgtttgtccagtgtgcagctggtg-gaacggctaatgttcaagaactgtcgtatctga |
642 |
Q |
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| T |
47598107 |
atccctgctttggaacaggctgtgtttgtccagtatgcagctggtgtggacggctaatgttcaggaactgccgtatctga |
47598186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 47597385 - 47597440
Alignment:
| Q |
200 |
aatggtctgtttaacactagcttagaagaaaaaagcaatgcaagtttggtcagtga |
255 |
Q |
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| T |
47597385 |
aatggtctgtttatcactaacttggaagaaaaaagcaatgcaagttcggtcagtga |
47597440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 306
Target Start/End: Original strand, 47597501 - 47597550
Alignment:
| Q |
257 |
cgttctttttcctaagagatgtgcaaggtccaagagctccatagattttg |
306 |
Q |
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| T |
47597501 |
cgttcttttttctaagagacatgcaaggtccaagagctccagaaattttg |
47597550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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