View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17990_low_41 (Length: 254)
Name: NF17990_low_41
Description: NF17990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17990_low_41 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 14644411 - 14644186
Alignment:
| Q |
18 |
tatatttggaaaaatattaaattatacatgtacaatcttttcagcacttttaatgatacgtgtagattgttcaaatggtagtcctaatcttaattcttac |
117 |
Q |
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| T |
14644411 |
tatatttggaaaa-tattaaattatacatgtacaatcttttcagcacttttaatgatatgtgtagattgttcaaatggtagttctaatcttaaatcttac |
14644313 |
T |
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| Q |
118 |
aagttgctgccattttgcaaagtctggtttgatttttatagggacttcattgcaatatgtgttggagcattattcttcattgaaatgatactgccactat |
217 |
Q |
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| T |
14644312 |
aagttgctgccattttgcaaagtctggtttgatttttatagggacttcattgcaatatgtgttgaagcattattcttcattgaaatgatactgccactat |
14644213 |
T |
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| Q |
218 |
ataaagctatagaactacaaacctatg |
244 |
Q |
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| T |
14644212 |
ataaagctatagaactagaaacctatg |
14644186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 114 - 244
Target Start/End: Complemental strand, 14672233 - 14672103
Alignment:
| Q |
114 |
ttacaagttgctgccattttgcaaagtctggtttgatttttatagggacttcattgcaatatgtgttggagcattattcttcattgaaatgatactgcca |
213 |
Q |
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| T |
14672233 |
ttacaagttgctgccatcttgcaaagtctggtttgaactttatagggacttcattgcaatatgtgttggagcattattcttcattggaatgatactgcca |
14672134 |
T |
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| Q |
214 |
ctatataaagctatagaactacaaacctatg |
244 |
Q |
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| T |
14672133 |
ctatataaagctatagaactagaaacctatg |
14672103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 114 - 244
Target Start/End: Original strand, 14668998 - 14669128
Alignment:
| Q |
114 |
ttacaagttgctgccattttgcaaagtctggtttgatttttatagggacttcattgcaatatgtgttggagcattattcttcattgaaatgatactgcca |
213 |
Q |
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| T |
14668998 |
ttacaagttgcagccatcttgcaaagtctggtttgaactttatagggacttcattgcaatatgtgttggagcattattcttcattggaatgatactgcca |
14669097 |
T |
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| Q |
214 |
ctatataaagctatagaactacaaacctatg |
244 |
Q |
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| T |
14669098 |
ctatataaagctatagaactagaaacctatg |
14669128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 114 - 227
Target Start/End: Original strand, 14661049 - 14661162
Alignment:
| Q |
114 |
ttacaagttgctgccattttgcaaagtctggtttgatttttatagggacttcattgcaatatgtgttggagcattattcttcattgaaatgatactgcca |
213 |
Q |
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| T |
14661049 |
ttacaagttgctgccatcttgcaaagtctggttggaactttatagggacttcattgcaatatgtattggagcattattcttcattggaatgatactgcca |
14661148 |
T |
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| Q |
214 |
ctatataaagctat |
227 |
Q |
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| T |
14661149 |
ctatataaagctat |
14661162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 14660912 - 14660992
Alignment:
| Q |
18 |
tatatttggaaaaatattaaattatacatgtacaatcttttcagcacttttaatgatacgtgtagattgttcaaatggtag |
98 |
Q |
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| T |
14660912 |
tatatttggaaaaatattaaattatatatgtacaatcttttcagcacctttaatgatatgtgttggttgttcaaatggtag |
14660992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 244
Target Start/End: Complemental strand, 14688818 - 14688727
Alignment:
| Q |
153 |
ttatagggacttcattgcaatatgtgttggagcattattcttcattgaaatgata--ctgccactatataaagctatagaactacaaacctatg |
244 |
Q |
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| T |
14688818 |
ttataggaacttcattgcaat--gtgttggagcataattcttcattggaatgatatactgccactatataaagccgtagaactagaaacctatg |
14688727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 14668863 - 14668941
Alignment:
| Q |
18 |
tatatttggaaaaatattaaattatacatgtacaatcttttcagcacttttaatgatacgtgtagattgttcaaatggtag |
98 |
Q |
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| T |
14668863 |
tatatttggataaatattaaattatatatgtacaatattttcagcacctttaatgat--gtgttggttgttcaaatggtag |
14668941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 44 - 98
Target Start/End: Complemental strand, 14672344 - 14672290
Alignment:
| Q |
44 |
catgtacaatcttttcagcacttttaatgatacgtgtagattgttcaaatggtag |
98 |
Q |
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| T |
14672344 |
catgtacaatcttttcagaacctttaatgatatgtgttggttgttcaaatggtag |
14672290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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