View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17990_low_42 (Length: 250)
Name: NF17990_low_42
Description: NF17990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17990_low_42 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 19)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 20015884 - 20016108
Alignment:
| Q |
1 |
caatagctgagtctaatgccagcttaacattgtcaattttcaaagcctgaacctgatgccacctaaacaataaagggccgtcatggttgatcaacatggg |
100 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||| |||||||||||||| |
|
|
| T |
20015884 |
caatagctgagtctaatgccaccataacattgtcaattttcaaagcctgaaccttatgccacctaaacaataaagggtcttcatgattgatcaacatggg |
20015983 |
T |
|
| Q |
101 |
ctttggttgtaaatttctgaacctctcccacacccaaatttgaaccaaataaaagggtgattgaagagtaagttttaaaggatatctatgactacaaaca |
200 |
Q |
| |
|
| |||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||| |||| || ||||||||| |||| || || ||| |
|
|
| T |
20015984 |
ttgtggttgtaaaattttgaacctctcccacacccaaatttgaaccaaataaatgggtgattgaagtgtaacttctaaaggatacctatcaccacccaca |
20016083 |
T |
|
| Q |
201 |
ggatattttgacaaatcaacaattg |
225 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
20016084 |
tgatattttgacaaatcaacaattg |
20016108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 3 - 250
Target Start/End: Original strand, 20036288 - 20036535
Alignment:
| Q |
3 |
atagctgagtctaatgccagcttaacattgtcaattttcaaagcctgaacctgatgccacctaaacaataaagggccgtcatggttgatcaacatgggct |
102 |
Q |
| |
|
||||| ||||||||||||| | ||||||||||||| |||| | || ||||| ||||||||||||||| |||||| | ||||||| | ||||||||| | |
|
|
| T |
20036288 |
atagccgagtctaatgccatcctaacattgtcaatcatcaagggcttaaccttatgccacctaaacaaaaaagggtccccatggttcaacaacatgggtt |
20036387 |
T |
|
| Q |
103 |
ttggttgtaaatttctgaacctctcccacacccaaatttgaaccaaataaaagggtgattgaagagtaagttttaaaggatatctatgactacaaacagg |
202 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||| || ||||||| ||||| || || |||| | |
|
|
| T |
20036388 |
gtggttgtaaatttttgaacctctcccacacccaaatttgaaccaagtaaaagggtgattcaagagtaacttctaaaggaagtctatcaccaccaacatg |
20036487 |
T |
|
| Q |
203 |
atattttgacaaatcaacaattgnnnnnnnaaacaaagttaaatcctt |
250 |
Q |
| |
|
| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
20036488 |
acattttgacaaatcaacaattgttttcttaaacaaagttaaatcctt |
20036535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 4 - 220
Target Start/End: Complemental strand, 19818992 - 19818770
Alignment:
| Q |
4 |
tagctgagtctaatgccagcttaacattgtcaattttcaaagcctgaacctgatgccacctaaacaataaagggccgtcatggttgatcaacatgg---- |
99 |
Q |
| |
|
|||| ||||||||||||| | ||||||||||||||| ||| |||||||| | ||||||||||||||| |||||| | ||||||| |||||||||| |
|
|
| T |
19818992 |
tagccgagtctaatgccatcctaacattgtcaatttccaaggcctgaacatcatgccacctaaacaaaaaagggtctccatggtttatcaacatggtttg |
19818893 |
T |
|
| Q |
100 |
--gctttggttgtaaatttctgaacctctcccacacccaaatttgaaccaaataaaagggtgattgaagagtaagttttaaaggatatctatgactacaa |
197 |
Q |
| |
|
|| |||||| | |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||| || || | |
|
|
| T |
19818892 |
tggcagtggttgcatatttttgaacctctcccacacccatatttgaaccaaataaaagggtgattgaagagtaagttctaaaggaaatctatcaccacca |
19818793 |
T |
|
| Q |
198 |
acaggatattttgacaaatcaac |
220 |
Q |
| |
|
|||| |||||||||||||||||| |
|
|
| T |
19818792 |
acagaatattttgacaaatcaac |
19818770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 5 - 219
Target Start/End: Complemental strand, 17115144 - 17114930
Alignment:
| Q |
5 |
agctgagtctaatgccagcttaacattgtcaattttcaaagcctgaacctgatgccacctaaacaataaagggccgtcatggttgatcaacatgggcttt |
104 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||| | |||||||||||||||||| | | |
|
|
| T |
17115144 |
agctaagtctaatgctagcttaacattgtcaattttcacggcctgaaccctatgccacctaaacaataaagggtctccatggttgatcaacatggattgt |
17115045 |
T |
|
| Q |
105 |
ggttgtaaatttctgaacctctcccacacccaaatttgaaccaaataaaagggtgattgaagagtaagttttaaaggatatctatgactacaaacaggat |
204 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||||||| |||||||| | || ||| || || ||||||| |||||| || | ||||||||| |
|
|
| T |
17115044 |
ggttgtaaatttttgaacctctcccacatccaaatttgaaccaagtaaaagggcattcgacgagcaacttctaaaggaaatctatcaccataaacaggat |
17114945 |
T |
|
| Q |
205 |
attttgacaaatcaa |
219 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
17114944 |
tttttgacaaatcaa |
17114930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 3 - 220
Target Start/End: Complemental strand, 19838826 - 19838609
Alignment:
| Q |
3 |
atagctgagtctaatgccagcttaacattgtcaattttcaaagcctgaacctgatgccacctaaacaataaagggccgtcatggttgatcaacatgggct |
102 |
Q |
| |
|
||||| |||||||| |||| | ||| |||||||||| |||| |||| ||| | ||||||||||||||| |||||| | | ||||| | |||||| || | |
|
|
| T |
19838826 |
atagccgagtctaaagccatcctaatattgtcaattatcaaggccttaactttatgccacctaaacaaaaaagggtccccctggttcaacaacattggtt |
19838727 |
T |
|
| Q |
103 |
ttggttgtaaatttctgaacctctcccacacccaaatttgaaccaaataaaagggtgattgaagagtaagttttaaaggatatctatgactacaaacagg |
202 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||| ||| || || |||||| |
|
|
| T |
19838726 |
gtggttgtaaatttttgaacctctcccacacccaaatttgaaccaagtaaaagggtgattgaagagtaacttctaaaggatatgtatcacaaccaacagg |
19838627 |
T |
|
| Q |
203 |
atattttgacaaatcaac |
220 |
Q |
| |
|
|| ||||||||||||||| |
|
|
| T |
19838626 |
atgttttgacaaatcaac |
19838609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 3 - 220
Target Start/End: Complemental strand, 19956517 - 19956300
Alignment:
| Q |
3 |
atagctgagtctaatgccagcttaacattgtcaattttcaaagcctgaacctgatgccacctaaacaataaagggccgtcatggttgatcaacatgggct |
102 |
Q |
| |
|
||||| ||||||||||||| | |||||||||||| | |||| | || ||||| ||||||||||||||| |||||| |||||| | ||||||||| | |
|
|
| T |
19956517 |
atagccgagtctaatgccatcctaacattgtcaactatcaagggcttaaccttatgccacctaaacaaaaaagggttcctatggttcaacaacatgggtt |
19956418 |
T |
|
| Q |
103 |
ttggttgtaaatttctgaacctctcccacacccaaatttgaaccaaataaaagggtgattgaagagtaagttttaaaggatatctatgactacaaacagg |
202 |
Q |
| |
|
||| ||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||| || || ||||| |
|
|
| T |
19956417 |
gtggctgtaaatttttgaacctttcccacacccaaatttgaaccaagtaaaagggtgattgaagagtaagttctgaaggatatctatcaccacccacagg |
19956318 |
T |
|
| Q |
203 |
atattttgacaaatcaac |
220 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
19956317 |
atattttgacaaatcaac |
19956300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 3 - 250
Target Start/End: Complemental strand, 19951554 - 19951307
Alignment:
| Q |
3 |
atagctgagtctaatgccagcttaacattgtcaattttcaaagcctgaacctgatgccacctaaacaataaagggccgtcatggttgatcaacatgggct |
102 |
Q |
| |
|
||||||| ||||||||| | | |||||| || ||| |||| | || ||||| ||||||||||||||| |||||| | ||||||| ||| |||||| | |
|
|
| T |
19951554 |
atagctgcgtctaatgctaacctaacatcgtggattctcaagggcttaaccttatgccacctaaacaaaaaagggtctccatggtttatcggcatgggtt |
19951455 |
T |
|
| Q |
103 |
ttggttgtaaatttctgaacctctcccacacccaaatttgaaccaaataaaagggtgattgaagagtaagttttaaaggatatctatgactacaaacagg |
202 |
Q |
| |
|
||||||||||||| | ||||||||||| | ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| || || ||| | |
|
|
| T |
19951454 |
gtggttgtaaatttttaaacctctcccaaatccaaatttgaaccaagtaaaagggtgattgaagagtaagttctaaaggatatctatcaccacccacatg |
19951355 |
T |
|
| Q |
203 |
atattttgacaaatcaacaattgnnnnnnnaaacaaagttaaatcctt |
250 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
19951354 |
atattttgacaaatcaacaattgcttttttaaacaaagttaaatcctt |
19951307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 3 - 218
Target Start/End: Complemental strand, 19849429 - 19849208
Alignment:
| Q |
3 |
atagctgagtctaatgccagcttaacattgtcaattttcaaagcctgaacctgatgccacctaaacaataaagggccgtcatggttgatcaacatgg--- |
99 |
Q |
| |
|
||||| ||||||||||||| | ||||||||||||||||||| |||||||||| |||||| |||||||||||||| | |||||||| ||||||||| |
|
|
| T |
19849429 |
atagccgagtctaatgccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaaggatccccatggttggtcaacatggttt |
19849330 |
T |
|
| Q |
100 |
---gctttggttgtaaatttctgaacctctcccacacccaaatttgaaccaaataaaagggtgattgaagagtaagttttaaaggatatctatgactaca |
196 |
Q |
| |
|
||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| | || ||| |||||| || || |
|
|
| T |
19849329 |
gtggctgtggttgcaaatttttgaacctctcccacacccaaatttgaaccaaataaaagggtgatttaagagtaatctccaagggaaatctatcaccacc |
19849230 |
T |
|
| Q |
197 |
aacaggatattttgacaaatca |
218 |
Q |
| |
|
|||| || |||||||||||||| |
|
|
| T |
19849229 |
aacatgacattttgacaaatca |
19849208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 8 - 225
Target Start/End: Complemental strand, 20046548 - 20046331
Alignment:
| Q |
8 |
tgagtctaatgccagcttaacattgtcaattttcaaagcctgaacctgatgccacctaaacaataaagggccgtcatggttgatcaacatgggctttggt |
107 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||| || ||||||| |||||||||||||||||||||| || | |||||||||||||| | |||| |
|
|
| T |
20046548 |
tgagtctaatgccaacttaacattatcaattttcaatgcgtgaaccttatgccacctaaacaataaagggtcgctgggattgatcaacatgggttgtggt |
20046449 |
T |
|
| Q |
108 |
tgtaaatttctgaacctctcccacacccaaatttgaaccaaataaaagggtgattgaagagtaagttttaaaggatatctatgactacaaacaggatatt |
207 |
Q |
| |
|
|||| ||| |||||||||||||||||||| |||||||||||||||||||||| ||| ||||| || | |||| |||||| || || ||| ||||||| |
|
|
| T |
20046448 |
ggtaattttgcgaacctctcccacacccaaacttgaaccaaataaaagggtgatagaatagtaaattcaacaggaaatctatcaccaccaaccggatatt |
20046349 |
T |
|
| Q |
208 |
ttgacaaatcaacaattg |
225 |
Q |
| |
|
|| ||| ||||| ||||| |
|
|
| T |
20046348 |
ttaacagatcaataattg |
20046331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 23 - 189
Target Start/End: Complemental strand, 26647414 - 26647248
Alignment:
| Q |
23 |
cttaacattgtcaattttcaaagcctgaacctgatgccacctaaacaataaagggccgtcatggttgatcaacatgggctttggttgtaaatttctgaac |
122 |
Q |
| |
|
||||||| ||||||||||||| || ||||| ||||||||||||||| |||||| | | ||||||||||| |||| | ||||||||||||| ||||| |
|
|
| T |
26647414 |
cttaacactgtcaattttcaagatcttaaccttatgccacctaaacaacaaagggtctccttggttgatcaaattgggttgtggttgtaaatttttgaac |
26647315 |
T |
|
| Q |
123 |
ctctcccacacccaaatttgaaccaaataaaagggtgattgaagagtaagttttaaaggatatctat |
189 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
26647314 |
ctttcccacacccaaatttgaaccaagtaaaagggtgattgaagagtaacttccaaaggatatctat |
26647248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 50 - 225
Target Start/End: Complemental strand, 19812669 - 19812488
Alignment:
| Q |
50 |
aacctgatgccacctaaacaataaagggccgtcatggttgatcaacatgg------gctttggttgtaaatttctgaacctctcccacacccaaatttga |
143 |
Q |
| |
|
||||| ||||||||||||||| |||||| || |||||||||||||||| | | | |||||| |||||| ||||||||||||| |||||||||||| |
|
|
| T |
19812669 |
aaccttatgccacctaaacaaaaaagggtcgccatggttgatcaacatagtttgttgttgtggttgcaaatttttgaacctctcccaaacccaaatttga |
19812570 |
T |
|
| Q |
144 |
accaaataaaagggtgattgaagagtaagttttaaaggatatctatgactacaaacaggatattttgacaaatcaacaattg |
225 |
Q |
| |
|
||||| |||||||||||||||||||||| | || ||| |||||| || || ||||||||||||||||||||||||||||| |
|
|
| T |
19812569 |
accaagtaaaagggtgattgaagagtaatctccaagggaaatctatcaccaccaacaggatattttgacaaatcaacaattg |
19812488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 19858504 - 19858343
Alignment:
| Q |
1 |
caatagctgagtctaatgccagcttaacattgtcaattttcaaagcctgaacctgatgccacctaaacaataaagggccgtcatggttgatcaacatggg |
100 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||| |||||| |||| ||||| ||||||||||||||||||||| | |||| |||||||||||||| |
|
|
| T |
19858504 |
caatagccgagtctaatgccaacttaacattgtcaactttcaaggccttaaccttatgccacctaaacaataaaggttctccatgcttgatcaacatggg |
19858405 |
T |
|
| Q |
101 |
ctttggttgtaaatttctgaacctctcccacacccaaatttgaaccaaataaaagggtgatt |
162 |
Q |
| |
|
| ||| | ||||||| ||||||| ||||| ||||||| ||||| ||| ||||||||||||| |
|
|
| T |
19858404 |
ttgtggctctaaatttttgaacctttcccaaacccaaacttgaagcaagtaaaagggtgatt |
19858343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 10 - 182
Target Start/End: Complemental strand, 19832295 - 19832123
Alignment:
| Q |
10 |
agtctaatgccagcttaacattgtcaattttcaaagcctgaacctgatgccacctaaacaataaagggccgtcatggttgatcaacatgggctttggttg |
109 |
Q |
| |
|
|||||||||||| | |||||||||||||| ||| |||| ||||| ||||||||||||||| || || | | | ||| | ||||||||| | ||| || |
|
|
| T |
19832295 |
agtctaatgccatcctaacattgtcaattaccaaggccttaaccttatgccacctaaacaaaaatggttcccctttgttcaacaacatgggttgtggatg |
19832196 |
T |
|
| Q |
110 |
taaatttctgaacctctcccacacccaaatttgaaccaaataaaagggtgattgaagagtaagttttaaagga |
182 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||| |
|
|
| T |
19832195 |
taaatttttgaacctctcccacacccaaatttgaaccaagtaaaagggtgattgaagagtaacttctaaagga |
19832123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 56 - 167
Target Start/End: Complemental strand, 19989902 - 19989791
Alignment:
| Q |
56 |
atgccacctaaacaataaagggccgtcatggttgatcaacatgggctttggttgtaaatttctgaacctctcccacacccaaatttgaaccaaataaaag |
155 |
Q |
| |
|
||||||||||||||| |||||| | |||| |||||||| |||||| | ||||||||||||| ||||||||||||| ||||||| ||||||||| |||||| |
|
|
| T |
19989902 |
atgccacctaaacaaaaaagggtcttcatagttgatcagcatgggttgtggttgtaaatttttgaacctctcccaaacccaaacttgaaccaagtaaaag |
19989803 |
T |
|
| Q |
156 |
ggtgattgaaga |
167 |
Q |
| |
|
|||||||||||| |
|
|
| T |
19989802 |
ggtgattgaaga |
19989791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 26653583 - 26653360
Alignment:
| Q |
1 |
caatagctgagtctaatgccagcttaacattgtcaattttcaaagcctgaacctgatgccacctaaacaataaagggccgtcatggttgatcaacatggg |
100 |
Q |
| |
|
|||| |||||||||||||||| | | ||||||| |||| | | || | ||||| ||||||||| |||||| || || | ||| ||||||||| |||| |
|
|
| T |
26653583 |
caattgctgagtctaatgccaacctcacattgtaaattataagggcat-aaccttatgccacctcaacaatgaatggtcttcactattgatcaacttggg |
26653485 |
T |
|
| Q |
101 |
ctttggttgtaaatttctgaacctctcccacacccaaatttgaaccaaataaaagggtgattgaagagtaagttttaaaggatatctatgactacaaaca |
200 |
Q |
| |
|
| |||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||| | ||| ||| || |||||| |||||| || || |||| |
|
|
| T |
26653484 |
ttgtggttgcaaatttgtgaacctctcccacacccaaatttgaaccaagtaaaagggtgatcgtagattaacttccaaaggaaatctatcaccaccaaca |
26653385 |
T |
|
| Q |
201 |
ggatattttgacaaatcaacaattg |
225 |
Q |
| |
|
||||||||||||| ||||||||| |
|
|
| T |
26653384 |
taatattttgacaaaccaacaattg |
26653360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 163
Target Start/End: Complemental strand, 19944147 - 19943987
Alignment:
| Q |
3 |
atagctgagtctaatgccagcttaacattgtcaattttcaaagcctgaacctgatgccacctaaacaataaagggccgtcatggttgatcaacatgggct |
102 |
Q |
| |
|
|||||||| |||||||||| | ||||||||||||||||| |||| ||| | ||||||||| ||||||| | || | ||| ||||||||| | || | |
|
|
| T |
19944147 |
atagctgaatctaatgccaaccccacattgtcaattttcaaggccttaacattatgccacctcaacaatacatggtctccattattgatcaactttggtt |
19944048 |
T |
|
| Q |
103 |
ttggttgtaaatttctgaacctctcccacacccaaatttgaaccaaataaaagggtgattg |
163 |
Q |
| |
|
||| || |||||| ||||||| ||||| ||||||| |||||||| |||||||||||||| |
|
|
| T |
19944047 |
gtggctgcaaatttttgaacctttcccaaacccaaacttgaaccaggtaaaagggtgattg |
19943987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 163
Target Start/End: Original strand, 24839666 - 24839822
Alignment:
| Q |
7 |
ctgagtctaatgccagcttaacattgtcaattttcaaagcctgaacctgatgccacctaaacaataaagggccgtcatggttgatcaacatgggctttgg |
106 |
Q |
| |
|
||||||||||||||| | | ||||||||||||||||| |||| ||| | ||||||||| ||||||| | || | || ||| |||| |||| | ||| |
|
|
| T |
24839666 |
ctgagtctaatgccaacctcacattgtcaattttcaaggccttaacattatgccacctcaacaatacatggtctcgattattgcccaacttgggttgtgg |
24839765 |
T |
|
| Q |
107 |
ttgtaaatttctgaacctctcccacacccaaatttgaaccaaataaaagggtgattg |
163 |
Q |
| |
|
|| |||||| ||||||| ||||| ||||||| |||||||| |||||||||||||| |
|
|
| T |
24839766 |
ctgcaaatttttgaacctttcccaaacccaaacttgaaccaggtaaaagggtgattg |
24839822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 105 - 225
Target Start/End: Complemental strand, 30914974 - 30914854
Alignment:
| Q |
105 |
ggttgtaaatttctgaacctctcccacacccaaatttgaaccaaataaaagggtgattgaagagtaagttttaaaggatatctatgactacaaacaggat |
204 |
Q |
| |
|
||||| |||||| | ||||||||||| ||||||||||| ||||| | ||||||||| |||||||||| | | |||| |||||| || || ||| ||| |
|
|
| T |
30914974 |
ggttgcaaattttttaacctctcccaaacccaaatttgtaccaagtcaaagggtgagtgaagagtaacctccataggacatctatcaccaccaacttgat |
30914875 |
T |
|
| Q |
205 |
attttgacaaatcaacaattg |
225 |
Q |
| |
|
||||||||||| |||| |||| |
|
|
| T |
30914874 |
attttgacaaaccaactattg |
30914854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 163
Target Start/End: Complemental strand, 19853877 - 19853764
Alignment:
| Q |
50 |
aacctgatgccacctaaacaataaagggccgtcatggttgatcaacatgggctttggttgtaaatttctgaacctctcccacacccaaatttgaaccaaa |
149 |
Q |
| |
|
||||| ||||||||| ||||||| | || | ||| |||||||||| | || | ||| || |||||| |||| ||||||||||||||| ||| ||||| |
|
|
| T |
19853877 |
aaccttatgccacctcaacaatacatggtctccattgttgatcaacttcggttgtggctgcaaatttatgaatctctcccacacccaagcttgtaccaag |
19853778 |
T |
|
| Q |
150 |
taaaagggtgattg |
163 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
19853777 |
taaaagggtgattg |
19853764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 3 - 225
Target Start/End: Complemental strand, 9815467 - 9815245
Alignment:
| Q |
3 |
atagctgagtctaatgccagcttaacattgtcaattttcaaagcctgaacctgatgccacctaaacaataaagggccgtcatggttgatcaacatgggct |
102 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||| | | || |||||||||||||| | |
|
|
| T |
9815467 |
atagccgagtctaatgccagcttaacattgtcaattttcaaggcctgaaccttatgtcacctaaacaataaagggtctccgtgattgatcaacatgggtt |
9815368 |
T |
|
| Q |
103 |
ttggttgtaaatttctgaacctctcccacacccaaatttgaaccaaataaaagggtgattgaagagtaagttttaaaggatatctatgactacaaacagg |
202 |
Q |
| |
|
||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||| || || ||||| |
|
|
| T |
9815367 |
ctggctgtaaattttggaacctctcccacacccaaatttgaaccaagtaaaagggtgattgaagagtaacttctaaaggatatctatcaccaccaacaga |
9815268 |
T |
|
| Q |
203 |
atattttgacaaatcaacaattg |
225 |
Q |
| |
|
|||||||||||| ||| |||| |
|
|
| T |
9815267 |
taattttgacaaattaactattg |
9815245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 10 - 223
Target Start/End: Original strand, 26354619 - 26354832
Alignment:
| Q |
10 |
agtctaatgccagcttaacattgtcaattttcaaagcctgaacctgatgccacctaaacaataaagggccgtcatggttgatcaacatgggctttggttg |
109 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| || || ||| |||||| ||||||||||||||| | || |||||||||||||||| | ||||| |
|
|
| T |
26354619 |
agtctaattccagcttaacattgtcaattttcaaggcttgtaccctatgccatctaaacaataaagggtctccacggttgatcaacatgggttgcggttg |
26354718 |
T |
|
| Q |
110 |
taaatttctgaacctctcccacacccaaatttgaaccaaataaaagggtgattgaagagtaagttttaaaggatatctatgactacaaacaggatatttt |
209 |
Q |
| |
|
||| ||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||| || |||||||||||||| || || ||||| ||||| |
|
|
| T |
26354719 |
taattttttgaacctctcccacacccaaatttgaaccaagtaaaacggtgattgaagagtaacttctaaaggatatctatcaccaccaacagataatttt |
26354818 |
T |
|
| Q |
210 |
gacaaatcaacaat |
223 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
26354819 |
gacaaatcaacaat |
26354832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 27 - 163
Target Start/End: Original strand, 22689385 - 22689521
Alignment:
| Q |
27 |
acattgtcaattttcaaagcctgaacctgatgccacctaaacaataaagggccgtcatggttgatcaacatgggctttggttgtaaatttctgaacctct |
126 |
Q |
| |
|
|||||||||||||||||||| | |||| ||||||| | || |||| | || | ||| ||||||||||||||| |||||| |||||| ||||||||| |
|
|
| T |
22689385 |
acattgtcaattttcaaagcattaaccaaatgccacttcaataatacatggtcttcactattgatcaacatgggccgtggttgcaaatttttgaacctct |
22689484 |
T |
|
| Q |
127 |
cccacacccaaatttgaaccaaataaaagggtgattg |
163 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
22689485 |
cccacacccaaacttgaaccaagtaaaagggtgattg |
22689521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 163
Target Start/End: Complemental strand, 11544502 - 11544343
Alignment:
| Q |
4 |
tagctgagtctaatgccagcttaacattgtcaattttcaaagcctgaacctgatgccacctaaacaataaagggccgtcatggttgatcaacatgggctt |
103 |
Q |
| |
|
||||||| |||||||||| | | ||||| ||||||||||| | | |||| ||||||||| | || || | || | ||| |||||||||| |||| || |
|
|
| T |
11544502 |
tagctgaatctaatgccaacctcacattatcaattttcaagggtttaaccaaatgccacctcatcagtacatggtctccattgttgatcaacttgggttt |
11544403 |
T |
|
| Q |
104 |
tggttgtaaatttctgaacctctcccacacccaaatttgaaccaaataaaagggtgattg |
163 |
Q |
| |
|
|||||| |||||| ||||||||||||| ||||||| ||||||||| |||| ||||||||| |
|
|
| T |
11544402 |
tggttgcaaatttttgaacctctcccaaacccaaacttgaaccaagtaaatgggtgattg |
11544343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 171
Target Start/End: Original strand, 6397429 - 6397592
Alignment:
| Q |
8 |
tgagtctaatgccagcttaacattgtcaattttcaaagcctgaacctgatgccacctaaacaataaagggccgtcatggttgatcaacatgggctttggt |
107 |
Q |
| |
|
||||||| |||||| ||||| |||||||||||| || |||||||||| || ||||||||| ||||||||| | ||| | |||||||| || | || |
|
|
| T |
6397429 |
tgagtctcatgccaacttaatattgtcaattttaaaggcctgaaccttataccacctaaaaaataaagggtctatgtgggtaatcaacataggttgtgaa |
6397528 |
T |
|
| Q |
108 |
tgtaaatttctgaacctctcccacacccaaatttgaaccaaataaaagggtgattgaagagtaa |
171 |
Q |
| |
|
| |||| | ||||||||| |||| |||||| ||||||||| ||||| |||||| ||||||||| |
|
|
| T |
6397529 |
cgcaaatgtgtgaacctcttccacgcccaaacttgaaccaagtaaaaaggtgatagaagagtaa |
6397592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 160
Target Start/End: Complemental strand, 6398611 - 6398537
Alignment:
| Q |
86 |
gttgatcaacatgggctttggttgtaaatttctgaacctctcccacacccaaatttgaaccaaataaaagggtga |
160 |
Q |
| |
|
||||||||||||| | | |||||| || ||| ||||||||||||||||| ||| |||||||| ||||| ||||| |
|
|
| T |
6398611 |
gttgatcaacatgagttgtggttgcaagtttgtgaacctctcccacacctaaacttgaaccacgtaaaaaggtga |
6398537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 213
Target Start/End: Original strand, 12495685 - 12495889
Alignment:
| Q |
8 |
tgagtctaatgccagcttaacattgtcaattttcaaagcctgaacctgatgccacctaaacaataaagggccgtcatggttgatcaacatgggctttggt |
107 |
Q |
| |
|
|||||||||||| | || |||||||||||||| ||| |||||||||| || | |||||| |||||||||| | |||||||| |||||||| | |||| |
|
|
| T |
12495685 |
tgagtctaatgcaaactgaacattgtcaatttgcaaggcctgaaccttattcaacctaagcaataaagggtctatgtggttgatgaacatggg-tgtggt |
12495783 |
T |
|
| Q |
108 |
tgtaaatttctgaacctctcccacacccaaatttgaaccaaataaaagggtgattgaagagtaagttttaaaggatatctatgactacaaacaggatatt |
207 |
Q |
| |
|
|| | ||| |||||||||||| | ||||| || | |||||||||| |||||| |||||||| || | ||||||| ||| | || |||| |||||| |
|
|
| T |
12495784 |
tgatagtttgtgaacctctcccgtatccaaacttaagccaaataaaaaggtgatataagagtaaattaaataggatatatatcatcaccaacaagatatt |
12495883 |
T |
|
| Q |
208 |
ttgaca |
213 |
Q |
| |
|
|||||| |
|
|
| T |
12495884 |
ttgaca |
12495889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 213
Target Start/End: Original strand, 12579781 - 12579985
Alignment:
| Q |
8 |
tgagtctaatgccagcttaacattgtcaattttcaaagcctgaacctgatgccacctaaacaataaagggccgtcatggttgatcaacatgggctttggt |
107 |
Q |
| |
|
|||||||||||| | ||||||||||||||||| ||| |||||||||| || | |||||| |||||||||| | |||||||||| ||||| | |||| |
|
|
| T |
12579781 |
tgagtctaatgcaaacttaacattgtcaatttgcaaggcctgaaccttattcaacctaagcaataaagggtctatgcggttgatcaatatggg-tgtggt |
12579879 |
T |
|
| Q |
108 |
tgtaaatttctgaacctctcccacacccaaatttgaaccaaataaaagggtgattgaagagtaagttttaaaggatatctatgactacaaacaggatatt |
207 |
Q |
| |
|
|| | ||| |||||||||||| | ||||| || | |||| ||||| |||||| ||||||||| || | ||||||| ||| | || |||| |||||| |
|
|
| T |
12579880 |
tgatagtttgtgaacctctcccgtatccaaacttaagccaagtaaaaaggtgatggaagagtaaattaaacaggatatatatcatcaccaacaagatatt |
12579979 |
T |
|
| Q |
208 |
ttgaca |
213 |
Q |
| |
|
|||||| |
|
|
| T |
12579980 |
ttgaca |
12579985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 12519486 - 12519553
Alignment:
| Q |
8 |
tgagtctaatgccagcttaacattgtcaattttcaaagcctgaacctgatgccacctaaacaataaag |
75 |
Q |
| |
|
|||||||||||| | ||||||||||||||||| ||| |||||||||| || | |||||| |||||||| |
|
|
| T |
12519486 |
tgagtctaatgcaaacttaacattgtcaatttgcaaggcctgaaccttattcaacctaagcaataaag |
12519553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 107 - 250
Target Start/End: Complemental strand, 1717540 - 1717397
Alignment:
| Q |
107 |
ttgtaaatttctgaacctctcccacacccaaatttgaaccaaataaaagggtgattgaagagtaagttttaaaggatatctatgactacaaacaggatat |
206 |
Q |
| |
|
||||||| || ||||||| || ||||||||||||||||||| |||||||||||||||||| ||| | || | |||||| | || |||||||||| |
|
|
| T |
1717540 |
ttgtaaacttttgaaccttcccaacacccaaatttgaaccaagtaaaagggtgattgaagactaacctccttagaaaatctatcgccaccaacaggatat |
1717441 |
T |
|
| Q |
207 |
tttgacaaatcaacaattgnnnnnnnaaacaaagttaaatcctt |
250 |
Q |
| |
|
||||||||| |||| |||| |||||||||||||||||| |
|
|
| T |
1717440 |
tttgacaaaccaactattgttttcttaaacaaagttaaatcctt |
1717397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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