View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17990_low_46 (Length: 237)
Name: NF17990_low_46
Description: NF17990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17990_low_46 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 47759653 - 47759857
Alignment:
| Q |
15 |
aagaacaagtaaaacatgaccacctaattgtaaatatgttgtaacgagcaattaagatgattaattaatgacaattagtaattaccttcttctgatgggg |
114 |
Q |
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| T |
47759653 |
aagaacaagtaaaacatgaccacctaattgtaaatatgttgtaacgagcaattaagatgattaattaatgacaattagtaattaccttcttctgatgggg |
47759752 |
T |
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| Q |
115 |
aggtttcacctgggtctattgcaggtgtaggatcatagaagctagaggtttcatatctgatattacaacttggtttgagaactctaccaccaatcttgtt |
214 |
Q |
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| T |
47759753 |
aggtttcacctgggtctattgcaggtgtaggatcatagaagctagaggtttcatatctgatattacaacttggtttgagaactctaccaccaatcttgtt |
47759852 |
T |
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| Q |
215 |
attac |
219 |
Q |
| |
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||||| |
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| T |
47759853 |
attac |
47759857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 47717543 - 47717744
Alignment:
| Q |
17 |
gaacaagtaaaacatgaccacctaattgtaaatatgttgtaacgagcaattaagatgattaattaatgacaattagtaattaccttcttctgatggggag |
116 |
Q |
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| T |
47717543 |
gaacgagtaaaacaagaccacctaattgtaaatatgttgtaacgagcaattaagatgattaattaacgacaattagtaattaccttcttctgatggggag |
47717642 |
T |
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| Q |
117 |
gtttcacctgggtctattgcaggtgtaggatcatagaagctagaggtttcatatctgatattacaacttggtttgagaactctaccaccaatcttgttat |
216 |
Q |
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| T |
47717643 |
gtttcacctgggtctattacaggtgtaggatcatagaaggaatagatttcatgtctaatattgcaacttggtttgagaactataccgccaaccttgttat |
47717742 |
T |
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| Q |
217 |
ta |
218 |
Q |
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|| |
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| T |
47717743 |
ta |
47717744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 71 - 216
Target Start/End: Original strand, 47712793 - 47712939
Alignment:
| Q |
71 |
atgattaa-ttaatgacaattagtaattaccttcttctgatggggaggtttcacctgggtctattgcaggtgtaggatcatagaagctagaggtttcata |
169 |
Q |
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|||||||| ||||||||||| |||||||||||||||||||||||||| |||| || ||| |||| | | |||||||||| |||||| | || |||||| |
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| T |
47712793 |
atgattaagttaatgacaatcagtaattaccttcttctgatggggagtgttcatcttggtttattactgttgtaggatcagagaagcgatagacttcata |
47712892 |
T |
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| Q |
170 |
tctgatattacaacttggtttgagaactctaccaccaatcttgttat |
216 |
Q |
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| T |
47712893 |
tctaatattacaacttggtttgacaactctacaaccaatcttgttat |
47712939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 71 - 216
Target Start/End: Original strand, 47745383 - 47745531
Alignment:
| Q |
71 |
atgattaattaatgacaattagtaatta---ccttcttctgatggggaggtttcacctgggtctattgcaggtgtaggatcatagaagctagaggtttca |
167 |
Q |
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| T |
47745383 |
atgattaggtaatgacaattagtaattattaccttcttctggtggggaggtttcatcttggtctattactgtcgtaggaccatagaaggaatatatttca |
47745482 |
T |
|
| Q |
168 |
tatctgatattacaacttggtttgagaactctaccaccaatcttgttat |
216 |
Q |
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| T |
47745483 |
tatctaatattacaacttagtttgagaactctaccaccaatcttgttat |
47745531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 71 - 218
Target Start/End: Original strand, 47704799 - 47704943
Alignment:
| Q |
71 |
atgattaattaatgacaattagtaattaccttcttctgatggggaggtttcacctgggtctattgcaggtgtaggatcatagaagctagaggtttcatat |
170 |
Q |
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|||||||| |||||| ||||| |||| |||||| |||||||||||||||| ||||||||||| | | |||||| |||||||| | |||||||||| |
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| T |
47704799 |
atgattaactaatgaaaattactaatcaccttc---tgatggggaggtttcatctgggtctattactgtcgtaggaccatagaagggattggtttcatat |
47704895 |
T |
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| Q |
171 |
ctgatattacaacttggtttgagaactctaccaccaatcttgttatta |
218 |
Q |
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|| ||||| ||||||||||||| |||||| |||||||||||||||||| |
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| T |
47704896 |
ctaatattgcaacttggtttgataactcttccaccaatcttgttatta |
47704943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 209
Target Start/End: Original strand, 28830930 - 28830976
Alignment:
| Q |
163 |
tttcatatctgatattacaacttggtttgagaactctaccaccaatc |
209 |
Q |
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| T |
28830930 |
tttcatatctaatattacaacttggtttcataactctagcaccaatc |
28830976 |
T |
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