View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17990_low_7 (Length: 582)

Name: NF17990_low_7
Description: NF17990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17990_low_7
NF17990_low_7
[»] scaffold0257 (1 HSPs)
scaffold0257 (20-571)||(17595-18148)
[»] chr3 (31 HSPs)
chr3 (17-269)||(28147997-28148250)
chr3 (17-165)||(28053738-28053886)
chr3 (17-165)||(28064163-28064311)
chr3 (17-289)||(28002441-28002721)
chr3 (17-141)||(28184030-28184154)
chr3 (17-150)||(28481358-28481491)
chr3 (17-150)||(28132213-28132346)
chr3 (17-141)||(28159466-28159590)
chr3 (17-295)||(28035691-28035977)
chr3 (17-165)||(27918635-27918783)
chr3 (17-150)||(28082006-28082139)
chr3 (17-150)||(28510530-28510663)
chr3 (22-220)||(11418999-11419197)
chr3 (20-135)||(27460919-27461034)
chr3 (17-156)||(27975615-27975754)
chr3 (58-162)||(17746019-17746123)
chr3 (58-162)||(19047339-19047443)
chr3 (362-412)||(28054019-28054069)
chr3 (362-412)||(28064444-28064494)
chr3 (195-256)||(28481226-28481286)
chr3 (195-256)||(28510407-28510467)
chr3 (197-256)||(28159634-28159692)
chr3 (362-412)||(28082276-28082326)
chr3 (198-256)||(28184199-28184256)
chr3 (191-282)||(27918818-27918907)
chr3 (199-275)||(28082191-28082266)
chr3 (82-156)||(26627822-26627896)
chr3 (245-342)||(11419208-11419305)
chr3 (25-98)||(27392146-27392219)
chr3 (519-571)||(28159888-28159940)
chr3 (519-571)||(28184440-28184492)
[»] chr7 (2 HSPs)
chr7 (195-289)||(8693124-8693216)
chr7 (17-89)||(8693252-8693324)
[»] chr2 (2 HSPs)
chr2 (195-256)||(8020145-8020205)
chr2 (17-64)||(8020024-8020071)


Alignment Details
Target: scaffold0257 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 20 - 571
Target Start/End: Original strand, 17595 - 18148
Alignment:
Q  20 tggagattccaaatctaaaatttgtagtatttgaaaatctaccaagcctcagtcatgccctgggaattcaatttcaagctgtaaaataccgtttcatacg 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||     
T  17595 tggagattccaaatctaaaatttgtagtatttgaaaatctaccaagactcagtcatgcccagggaattcaatttcaagctgtaaaataccgtttcataca 17694  T
Q  120 gaattgtcaaaaactatctctgccttcagcatcaacaccagacttctataatgaaattgatcgtttgggtcttgactacggtacacactctatccaatat 219  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  17695 gaattgtcaaaaactatctctggcttcagcatcaacaccagacttctataatgaaattcatcgtttgggtcttggctacggtacacactctatccaatat 17794  T
Q  220 tttttaaaaactatta--catgatggttgtaaataattaaatgtcatgcatttatatttacagcagcaaaaatataccgtggaatagatttatggttgga 317  Q
    |||||  |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17795 tttttttaaactattatacatgatggttgtaaataattaaatgtcatgcatttatatttacagcagcaaaaatataccgtggaatagatttatggttgga 17894  T
Q  318 ttttctttaaaattcatctctaaatatatatatttctctcaatttataaacaattgaatcttctaaagtaacggtatgaggtatgcatgcataagggctc 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17895 ttttctttaaaattcatctctaaatatatatatttctctcaatttataaacaattgaatcttctaaagtaacggtatgaggtatgcatgcataagggctc 17994  T
Q  418 gtggagtgtcgacctatctaatagaagctttaatattatacaaaatataaaagtggtaagacattaattattaggttgatagataaacagttttctgcat 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17995 gtggagtgtcgacctatctaatagaagctttaatattatacaaaatataaaagtggtaagacattaattattaggttgatagataaacagttttctgcat 18094  T
Q  518 ctttattattatgcttgagttactatattatattgctaatctctttaatatttt 571  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  18095 ctttattattatgcttgaattactatattatattgctaatctctttaatatttt 18148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 122; Significance: 3e-62; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 17 - 269
Target Start/End: Original strand, 28147997 - 28148250
Alignment:
Q  17 aagtggagattccaaatctaaaatttgtagtatttgaaaatctaccaagcctcagtcatgccctgggaattcaatttcaagctgtaaaataccgtttcat 116  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||  |||||| | ||||||||||||||||| ||||||| | ||||||||    
T  28147997 aagtggagattccaaatctaaaacttgtaatatttgaaaatctaccaagcctctatcatgctcagggaattcaatttcaagttgtaaaacatcgtttcat 28148096  T
Q  117 acggaattgtcaaaaactatctctgccttcagcatcaacaccagacttctataatgaaattgatcgtttgggtcttgactacggtacacactctatccaa 216  Q
    || |||||||||||||||||||||| ||||||  ||||||||||||||| | ||||| |||  |  ||  | | ||| |||||||||| |||||||||||    
T  28148097 actgaattgtcaaaaactatctctggcttcagagtcaacaccagacttcgaaaatgatatttctgcttcagattttggctacggtacagactctatccaa 28148196  T
Q  217 tat-tttttaaaaactattacatgatggttgtaaataattaaatgtcatgcatt 269  Q
    ||| |||||||||||||||||||| |||  ||||||||||| || |||||||||    
T  28148197 tatatttttaaaaactattacatgttggccgtaaataattacatatcatgcatt 28148250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 28053738 - 28053886
Alignment:
Q  17 aagtggagattccaaatctaaaatttgtagtatttgaaaatctaccaagcctcagtcatgccctgggaattcaatttcaagctgtaaaataccgtttcat 116  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| | ||||||||    
T  28053738 aagtggagattccaaatctaaaacttgtagtatttgaaaatctaccaagcctcagtcatgaccagggaattcaatttcaagctgtaaaacatcgtttcat 28053837  T
Q  117 acggaattgtcaaaaactatctctgccttcagcatcaacaccagacttc 165  Q
    || |||||||||||||||||||||| ||||||||||||||| |||||||    
T  28053838 actgaattgtcaaaaactatctctgacttcagcatcaacactagacttc 28053886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 28064163 - 28064311
Alignment:
Q  17 aagtggagattccaaatctaaaatttgtagtatttgaaaatctaccaagcctcagtcatgccctgggaattcaatttcaagctgtaaaataccgtttcat 116  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| | ||||||||    
T  28064163 aagtggagattccaaatctaaaacttgtagtatttgaaaatctaccaagcctcagtcatgaccagggaattcaatttcaagctgtaaaacatcgtttcat 28064262  T
Q  117 acggaattgtcaaaaactatctctgccttcagcatcaacaccagacttc 165  Q
    || |||||||||||||||||||||| ||||||||||||||| |||||||    
T  28064263 actgaattgtcaaaaactatctctgacttcagcatcaacactagacttc 28064311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 17 - 289
Target Start/End: Original strand, 28002441 - 28002721
Alignment:
Q  17 aagtggagattccaaatctaaaatttgtagtatttgaaaatctaccaagcctcagtcatgccctgggaattcaatttcaagctgtaaaataccgtttcat 116  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||  | ||||||||||||| ||||||||||| | ||| ||||    
T  28002441 aagtcgagattccaaatctaaaatttgtagtatttgaaaatctacgaagcctctgtcatgatcagggaattcaatttgaagctgtaaaacatcgtctcat 28002540  T
Q  117 acggaattgtcaaaaactatctctgccttcagcatcaacaccagacttctataatgaaattgatcgt-----ttgggtc----ttgactacggtacacac 207  Q
    || |||||||||||||||||||||| |||||||||||||| |||||||| | ||||| |||  | ||     || ||||    ||||| | |||||||||    
T  28002541 actgaattgtcaaaaactatctctgacttcagcatcaacagcagacttcgaaaatgatatttctggtttacgttcggtctggtttgacgagggtacacac 28002640  T
Q  208 tctatccaatattttttaaaaactattacatgatggttgtaaa-taattaaatgtcatgcatttatatttacagcagcaaaaa 289  Q
    ||||||||||||||||  |||||||||| ||| ||| |||||| | |||| || ||| ||||| |||||||||||| ||||||    
T  28002641 tctatccaatattttt--aaaactattaaatgttggctgtaaattgattacatatcaagcattaatatttacagcaacaaaaa 28002721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 28184030 - 28184154
Alignment:
Q  17 aagtggagattccaaatctaaaatttgtagtatttgaaaatctaccaagcctcagtcatgccctgggaattcaatttcaagctgtaaaataccgtttcat 116  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| | ||||||||    
T  28184030 aagtggagattccaaatctagaatgtgtagtatttgaaaatctaccaagcctcagtcatgcccagagaattcaatttcaagctgtaaaaaatcgtttcat 28184129  T
Q  117 acggaattgtcaaaaactatctctg 141  Q
    |||||||||||||||||| ||||||    
T  28184130 acggaattgtcaaaaactctctctg 28184154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 17 - 150
Target Start/End: Complemental strand, 28481491 - 28481358
Alignment:
Q  17 aagtggagattccaaatctaaaatttgtagtatttgaaaatctaccaagcctcagtcatgccctgggaattcaatttcaagctgtaaaataccgtttcat 116  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||  | ||||||||||||||||||||||||| | ||||||||    
T  28481491 aagtcgagattccaaatctaaaatttgtagtatttgaaaatctaccaagcctctgtcatgatcagggaattcaatttcaagctgtaaaacatcgtttcat 28481392  T
Q  117 acggaattgtcaaaaactatctctgccttcagca 150  Q
    || ||||||||||||||| |||||| ||||||||    
T  28481391 actgaattgtcaaaaactctctctggcttcagca 28481358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 17 - 150
Target Start/End: Original strand, 28132213 - 28132346
Alignment:
Q  17 aagtggagattccaaatctaaaatttgtagtatttgaaaatctaccaagcctcagtcatgccctgggaattcaatttcaagctgtaaaataccgtttcat 116  Q
    ||||||||||||||||||| ||| ||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||| | ||||||||    
T  28132213 aagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaagcctcaatcatgcccagggaattcaatttcaagatgtaaaacatcgtttcat 28132312  T
Q  117 acggaattgtcaaaaactatctctgccttcagca 150  Q
    || ||||||||||||||| |||||| ||||||||    
T  28132313 acagaattgtcaaaaactctctctgacttcagca 28132346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 28159466 - 28159590
Alignment:
Q  17 aagtggagattccaaatctaaaatttgtagtatttgaaaatctaccaagcctcagtcatgccctgggaattcaatttcaagctgtaaaataccgtttcat 116  Q
    ||||| |||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||| | ||||||||    
T  28159466 aagtgaagattccaaatctagaatgtgtagtatttgaaaatctaccaatcctcagtcatgcccagagaattcaatttcaagctgtaaaaaatcgtttcat 28159565  T
Q  117 acggaattgtcaaaaactatctctg 141  Q
    |||||||||||||||||| ||||||    
T  28159566 acggaattgtcaaaaactctctctg 28159590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 17 - 295
Target Start/End: Original strand, 28035691 - 28035977
Alignment:
Q  17 aagtggagattccaaatctaaaatttgtagtatttgaaaatctaccaagcctcagtcatgccctgggaattcaatttcaagctgtaaaataccgtttcat 116  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| || | ||||||| |||||| |||||||| | ||||||||    
T  28035691 aagtggagattccaaatctaaaatttgtagtgtttgaaaatctaccaagactcagtcatgtccagagaattcattttcaaactgtaaaacaacgtttcat 28035790  T
Q  117 acggaattgtcaaaaactatctctgccttcagcatcaacaccagacttctataatgaaattgatcgttt----------gggtcttgactacggtacaca 206  Q
     | ||||||||||| |||||||||| ||||| |||||||| || ||||  | ||||| |||  | ||||          | || ||||||||||||| ||    
T  28035791 gcagaattgtcaaacactatctctggcttcatcatcaacaacaaactttgaaaatgatatttctggtttatattctggcgagt-ttgactacggtacgca 28035889  T
Q  207 ctctatccaatattttttaaaaactattacatgatggttgtaaa-taattaaatgtcatgcatttatatttacagcagcaaaaatatacc 295  Q
    |||||||||||||||||  |||||||||| ||| ||| |||||| | |||| || ||||||| | |||||||||||| |||||| |||||    
T  28035890 ctctatccaatattttt--aaaactattaaatgttggctgtaaattgattacatatcatgcactaatatttacagcaacaaaaacatacc 28035977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 27918635 - 27918783
Alignment:
Q  17 aagtggagattccaaatctaaaatttgtagtatttgaaaatctaccaagcctcagtcatgccctgggaattcaatttcaagctgtaaaataccgtttcat 116  Q
    |||||||||||||||||||| ||| | ||||||||||||||||||||||||||||| ||| || ||||||||| |||||| |||||||| | ||||||||    
T  27918635 aagtggagattccaaatctagaatatctagtatttgaaaatctaccaagcctcagtgatgtccagggaattcattttcaaactgtaaaacatcgtttcat 27918734  T
Q  117 acggaattgtcaaaaactatctctgccttcagcatcaacaccagacttc 165  Q
    || ||||||||||| |||||||||| ||||| ||||||||  |||||||    
T  27918735 acagaattgtcaaacactatctctggcttcatcatcaacaatagacttc 27918783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 17 - 150
Target Start/End: Original strand, 28082006 - 28082139
Alignment:
Q  17 aagtggagattccaaatctaaaatttgtagtatttgaaaatctaccaagcctcagtcatgccctgggaattcaatttcaagctgtaaaataccgtttcat 116  Q
    |||||||||||||| |||||  ||||||||||||||||||||| ||||||||| |||||||||  |||||||||||| ||||||||| ||| ||||||||    
T  28082006 aagtggagattccatatctacgatttgtagtatttgaaaatcttccaagcctctgtcatgcccaaggaattcaatttgaagctgtaacatatcgtttcat 28082105  T
Q  117 acggaattgtcaaaaactatctctgccttcagca 150  Q
    || ||||||||||||||| |||||| ||||||||    
T  28082106 acagaattgtcaaaaactctctctggcttcagca 28082139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 17 - 150
Target Start/End: Complemental strand, 28510663 - 28510530
Alignment:
Q  17 aagtggagattccaaatctaaaatttgtagtatttgaaaatctaccaagcctcagtcatgccctgggaattcaatttcaagctgtaaaataccgtttcat 116  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||  |||||| | ||||||||||||||||||||||||| | ||||| ||    
T  28510663 aagtggagattccaaatctaaaacttgtaatatttgaaaatctaccaagcctctatcatgctcagggaattcaatttcaagctgtaaaacatcgtttaat 28510564  T
Q  117 acggaattgtcaaaaactatctctgccttcagca 150  Q
    |  ||||||||||||||| |||||| ||||||||    
T  28510563 aatgaattgtcaaaaactctctctggcttcagca 28510530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 22 - 220
Target Start/End: Original strand, 11418999 - 11419197
Alignment:
Q  22 gagattccaaatctaaaatttgtagtatttgaaaatctaccaagcctcagtcatgccctgggaattcaatttcaagctgtaaaataccgtttcatacgga 121  Q
    |||||||| ||||| |||||| |||||||||||||||| |||||  || |  || ||| | ||||||||| ||||||||||||||| |||||||||| ||    
T  11418999 gagattccgaatcttaaatttttagtatttgaaaatctgccaagtttctgggatacccagagaattcaatatcaagctgtaaaatatcgtttcatacaga 11419098  T
Q  122 attgtcaaaaactatctctgccttcagcatcaacaccagacttctataatgaaattgatcgtttgggtcttgactacggtacacactctatccaatatt 220  Q
    ||||||||||||| |||||| ||||| || ||||| ||| | |  | |||||  || ||||||| |   ||||||||||||||||||||||||||||||    
T  11419099 attgtcaaaaactctctctggcttcatcaacaacagcaggcctaaaaaatgaggttcatcgtttagtgtttgactacggtacacactctatccaatatt 11419197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 20 - 135
Target Start/End: Complemental strand, 27461034 - 27460919
Alignment:
Q  20 tggagattccaaatctaaaatttgtagtatttgaaaatctaccaagcctcagtcatgccctgggaattcaatttcaagctgtaaaataccgtttcatacg 119  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||||| |||||| || |||||||||| | |||||||||||| | | |||  |||     
T  27461034 tggagattccaaatctaaaacttgtagtatttgtaaatctaccaagcctctgtcatgtccagggaattcaactccaagctgtaaaacatcatttggtaca 27460935  T
Q  120 gaattgtcaaaaacta 135  Q
    ||||||||||||||||    
T  27460934 gaattgtcaaaaacta 27460919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 17 - 156
Target Start/End: Original strand, 27975615 - 27975754
Alignment:
Q  17 aagtggagattccaaatctaaaatttgtagtatttgaaaatctaccaagcctcagtcatgccctgggaattcaatttcaagctgtaaaataccgtttcat 116  Q
    ||||||||||||||||||| | | ||||| |||||||||||||||||||||||  ||||| ||  |||||||||||||||||||||||| | | |  |||    
T  27975615 aagtggagattccaaatctgatagttgtaatatttgaaaatctaccaagcctccatcatgaccaaggaattcaatttcaagctgtaaaacatcatgccat 27975714  T
Q  117 acggaattgtcaaaaactatctctgccttcagcatcaaca 156  Q
    || ||||||||||||||| || ||| | | ||||||||||    
T  27975715 acagaattgtcaaaaactctccctggcgttagcatcaaca 27975754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 58 - 162
Target Start/End: Complemental strand, 17746123 - 17746019
Alignment:
Q  58 ctaccaagcctcagtcatgccctgggaattcaatttcaagctgtaaaataccgtttcatacggaattgtcaaaaactatctctgccttcagcatcaacac 157  Q
    |||||||||||  |||| || |  |||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||| |||||||| |||||     
T  17746123 ctaccaagcctttgtcaagctcaaggaattcaatttcaagctgtaaaacatcgtttcatacggaattgtcaaaaactctctctggcttcagcaacaacag 17746024  T
Q  158 cagac 162  Q
    |||||    
T  17746023 cagac 17746019  T

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Target: chr3; HSP #17
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 58 - 162
Target Start/End: Complemental strand, 19047443 - 19047339
Alignment:
Q  58 ctaccaagcctcagtcatgccctgggaattcaatttcaagctgtaaaataccgtttcatacggaattgtcaaaaactatctctgccttcagcatcaacac 157  Q
    |||||||||||  |||| || |  |||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||| |||||||| |||||     
T  19047443 ctaccaagcctttgtcaagctcaaggaattcaatttcaagctgtaaaacatcgtttcatacggaattgtcaaaaactctctctggcttcagcaacaacag 19047344  T
Q  158 cagac 162  Q
    |||||    
T  19047343 cagac 19047339  T

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Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 362 - 412
Target Start/End: Original strand, 28054019 - 28054069
Alignment:
Q  362 tataaacaattgaatcttctaaagtaacggtatgaggtatgcatgcataag 412  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  28054019 tataaacaattgaatcttctaaagtagcggtaagaggtatgcatgcataag 28054069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 362 - 412
Target Start/End: Original strand, 28064444 - 28064494
Alignment:
Q  362 tataaacaattgaatcttctaaagtaacggtatgaggtatgcatgcataag 412  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  28064444 tataaacaattgaatcttctaaagtagcggtaagaggtatgcatgcataag 28064494  T

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Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 195 - 256
Target Start/End: Complemental strand, 28481286 - 28481226
Alignment:
Q  195 ctacggtacacactctatccaatattttttaaaaactattacatgatggttgtaaataatta 256  Q
    |||||||||||| ||||||||||||||||| |||||||||||||| ||| ||||||| ||||    
T  28481286 ctacggtacacattctatccaatatttttt-aaaactattacatgttggctgtaaattatta 28481226  T

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Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 195 - 256
Target Start/End: Complemental strand, 28510467 - 28510407
Alignment:
Q  195 ctacggtacacactctatccaatattttttaaaaactattacatgatggttgtaaataatta 256  Q
    |||||||||||| ||||||||||||||||| |||||||||||||| ||| ||||||| ||||    
T  28510467 ctacggtacacattctatccaatatttttt-aaaactattacatgttggctgtaaattatta 28510407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 197 - 256
Target Start/End: Original strand, 28159634 - 28159692
Alignment:
Q  197 acggtacacactctatccaatattttttaaaaactattacatgatggttgtaaataatta 256  Q
    |||||||||||||||||||||| |||||||||||||||||||| | | ||||||| ||||    
T  28159634 acggtacacactctatccaata-tttttaaaaactattacatgtttgctgtaaattatta 28159692  T

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Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 412
Target Start/End: Original strand, 28082276 - 28082326
Alignment:
Q  362 tataaacaattgaatcttctaaagtaacggtatgaggtatgcatgcataag 412  Q
    |||||| ||||||||||||||||||| || ||| |||||||||||||||||    
T  28082276 tataaagaattgaatcttctaaagtagcgatatcaggtatgcatgcataag 28082326  T

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Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 256
Target Start/End: Original strand, 28184199 - 28184256
Alignment:
Q  198 cggtacacactctatccaatattttttaaaaactattacatgatggttgtaaataatta 256  Q
    ||||||||||||||||||||| |||||||||||||||||||| | | ||||||| ||||    
T  28184199 cggtacacactctatccaata-tttttaaaaactattacatgtttgctgtaaattatta 28184256  T

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Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 191 - 282
Target Start/End: Original strand, 27918818 - 27918907
Alignment:
Q  191 ttgactacggtacacactctatccaatattttttaaaaactattacatgatggttgtaaataattaaatgtcatgcatttatatttacagca 282  Q
    ||||| |||||||||||| |||||| ||| |||  |||||||||| ||  ||| ||| |||||||| || ||||||||| ||||||||||||    
T  27918818 ttgacaacggtacacactttatccattatattt--aaaactattaaatattggctgtcaataattacatatcatgcattaatatttacagca 27918907  T

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Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 275
Target Start/End: Original strand, 28082191 - 28082266
Alignment:
Q  199 ggtacacactctatccaatattttttaaaaactattacatgatggttgtaaataattaaatgtcatgcatttatatt 275  Q
    |||||||| ||||||||||||||| |||||||||||||||| ||  ||||||| |||| ||  |||||||| |||||    
T  28082191 ggtacacattctatccaatatttt-taaaaactattacatgttgactgtaaattattatataccatgcattaatatt 28082266  T

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Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 82 - 156
Target Start/End: Original strand, 26627822 - 26627896
Alignment:
Q  82 ggaattcaatttcaagctgtaaaataccgtttcatacggaattgtcaaaaactatctctgccttcagcatcaaca 156  Q
    |||||||||||||| | |||| || | |||||  ||| ||||||||||||||| |||||  ||||||||||||||    
T  26627822 ggaattcaatttcaggatgtagaaaatcgttttgtacagaattgtcaaaaactctctctaacttcagcatcaaca 26627896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 342
Target Start/End: Original strand, 11419208 - 11419305
Alignment:
Q  245 tgtaaataattaaatgtcatgcatttatatttacagcagcaaaaatataccgtggaatagatttatggttggattttctttaaaattcatctctaaat 342  Q
    |||||||||||| || ||||||||| ||||||| |||| |||||| |||||   || ||||||||||| ||   || ||||||||| || ||||||||    
T  11419208 tgtaaataattacatatcatgcattaatatttaaagcaacaaaaacataccaatgactagatttatggatgatcttcctttaaaatccagctctaaat 11419305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 27392219 - 27392146
Alignment:
Q  25 attccaaatctaaaatttgtagtatttgaaaatctaccaagcctcagtcatgccctgggaattcaatttcaagc 98  Q
    ||||||||||| |||||||||| |||||  || |||||||||||||| ||  |||  |||||||| ||||||||    
T  27392219 attccaaatctgaaatttgtagcatttgtcaacctaccaagcctcagccagacccaaggaattcattttcaagc 27392146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 519 - 571
Target Start/End: Original strand, 28159888 - 28159940
Alignment:
Q  519 tttattattatgcttgagttactatattatattgctaatctctttaatatttt 571  Q
    ||||||||||||||||||||||||||| ||  || |||||||| || ||||||    
T  28159888 tttattattatgcttgagttactatataatgatgttaatctctatattatttt 28159940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 519 - 571
Target Start/End: Original strand, 28184440 - 28184492
Alignment:
Q  519 tttattattatgcttgagttactatattatattgctaatctctttaatatttt 571  Q
    ||||||||||||||||||||||||||| ||  || |||||||| || ||||||    
T  28184440 tttattattatgcttgagttactatataatgatgttaatctctatattatttt 28184492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 195 - 289
Target Start/End: Complemental strand, 8693216 - 8693124
Alignment:
Q  195 ctacggtacacactctatccaatattttttaaaaactattacatgatggttgtaaataattaaatgtcatgcatttatatttacagcagcaaaaa 289  Q
    ||||||||||||||||||||||||||||||  ||||||||||| | ||| |||||||||||| || ||||||||| ||||||| |||| ||||||    
T  8693216 ctacggtacacactctatccaatatttttt--aaactattacacgttggctgtaaataattacatatcatgcattaatatttatagcaacaaaaa 8693124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 8693324 - 8693252
Alignment:
Q  17 aagtggagattccaaatctaaaatttgtagtatttgaaaatctaccaagcctcagtcatgccctgggaattca 89  Q
    |||| ||||||||||||||| ||| |||||||||||||||||| ||||||||| |||||||||  ||||||||    
T  8693324 aagtcgagattccaaatctagaatatgtagtatttgaaaatcttccaagcctctgtcatgcccaaggaattca 8693252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 195 - 256
Target Start/End: Original strand, 8020145 - 8020205
Alignment:
Q  195 ctacggtacacactctatccaatattttttaaaaactattacatgatggttgtaaataatta 256  Q
    |||||||||||||||||| ||||| |||||||||||||||||| | ||| ||||||||||||    
T  8020145 ctacggtacacactctatacaata-tttttaaaaactattacacgttggctgtaaataatta 8020205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 8020024 - 8020071
Alignment:
Q  17 aagtggagattccaaatctaaaatttgtagtatttgaaaatctaccaa 64  Q
    ||||||||||||||||||| ||| ||||| ||||||||||||||||||    
T  8020024 aagtggagattccaaatctgaaagttgtaatatttgaaaatctaccaa 8020071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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