View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17990_low_8 (Length: 581)

Name: NF17990_low_8
Description: NF17990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17990_low_8
NF17990_low_8
[»] chr1 (6 HSPs)
chr1 (248-537)||(39899129-39899418)
chr1 (234-563)||(39891399-39891728)
chr1 (234-563)||(39876322-39876645)
chr1 (234-563)||(39884445-39884777)
chr1 (16-183)||(36321853-36322022)
chr1 (40-189)||(7926979-7927128)
[»] chr6 (4 HSPs)
chr6 (15-189)||(3386470-3386646)
chr6 (15-189)||(11116916-11117098)
chr6 (16-184)||(22961663-22961833)
chr6 (16-184)||(23826560-23826730)
[»] chr7 (9 HSPs)
chr7 (18-189)||(16650668-16650842)
chr7 (18-189)||(17625028-17625202)
chr7 (15-189)||(44109539-44109715)
chr7 (28-189)||(28009408-28009571)
chr7 (21-189)||(36337709-36337883)
chr7 (44-183)||(29655711-29655852)
chr7 (27-105)||(9651710-9651789)
chr7 (150-179)||(12678170-12678199)
chr7 (146-179)||(12680481-12680514)
[»] chr8 (1 HSPs)
chr8 (15-177)||(32108128-32108292)
[»] scaffold0086 (2 HSPs)
scaffold0086 (15-189)||(45625-45801)
scaffold0086 (83-189)||(52769-52877)
[»] chr5 (3 HSPs)
chr5 (15-189)||(26603823-26603999)
chr5 (79-189)||(19576012-19576125)
chr5 (131-166)||(37397584-37397619)
[»] chr2 (1 HSPs)
chr2 (67-189)||(20528980-20529104)
[»] chr4 (3 HSPs)
chr4 (48-184)||(3509633-3509771)
chr4 (16-162)||(31292931-31293079)
chr4 (27-105)||(13522735-13522814)
[»] scaffold0591 (1 HSPs)
scaffold0591 (67-184)||(3448-3567)
[»] chr3 (2 HSPs)
chr3 (31-85)||(29515562-29515616)
chr3 (15-64)||(4806110-4806159)
[»] scaffold0015 (1 HSPs)
scaffold0015 (146-179)||(21797-21830)


Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 248 - 537
Target Start/End: Complemental strand, 39899418 - 39899129
Alignment:
Q  248 tgttcaatgcttcttttaacaagttggagggcgaggtgcccatgcttggcgtttttcagaatgccagtagagttttattgactggcaatgacaggctttg 347  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39899418 tgttcaatgcttcttttaacaagttggagggcgaggtgcccatgcttggcgtttttcagaatgccagtagagttttattgactggcaatgacaggctttg 39899319  T
Q  348 cggtggggtagcaaaactgaaactgaaagtttgcccaccaaaagatgtaaaaaagagaaaacaccatattcgccgcaagttgatcatcgtcatcatcttc 447  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39899318 cggtggggtagcaaaactgaaactgaaagtttgcccaccaaaagatgtaaaaaagagaaaacaccatattcgccgcaagttgatcatcgtcatcatcttc 39899219  T
Q  448 tcaattgcatttctttttctattgtcatttatccttattatcatcatctaccagaaaatgaagaaaaggcagagaaaagcatccaatgat 537  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39899218 tcaattgcatttctttttctattgtcatttatccttattatcatcatctaccagaaaatgaagaaaaggcagagaaaagcatccaatgat 39899129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 234 - 563
Target Start/End: Complemental strand, 39891728 - 39891399
Alignment:
Q  234 ttctgttttagaattgttcaatgcttcttttaacaagttggagggcgaggtgcccatgcttggcgtttttcagaatgccagtagagttttattgactggc 333  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||    
T  39891728 ttctgttttagaatggttcaatgcttcttttaacaagttggagggcgaggtgcccatgcttggtgttttccagaatgccagtagagtttcattgactggc 39891629  T
Q  334 aatgacaggctttgcggtggggtagcaaaactgaaactgaaagtttgcccaccaaaagatgtaaaaaagagaaaacaccatattcgccgcaagttgatca 433  Q
    ||||||||||||||||| ||||||||| ||||||| |||||| |||||| ||||||| |||| ||||||||||||||||||||||| |||||||||||||    
T  39891628 aatgacaggctttgcggcggggtagcagaactgaatctgaaaatttgcctaccaaaaaatgtgaaaaagagaaaacaccatattcgtcgcaagttgatca 39891529  T
Q  434 tcgtcatcatcttctcaattgcatttctttttctattgtcatttatccttattatcatcatctaccagaaaatgaagaaaaggcagagaaaagcatccaa 533  Q
    || |||||||||||||||||||||||||  |||||||||||||| |||||| |||||||||||| |||| ||||| |||||||||||||||| ||||       
T  39891528 tcatcatcatcttctcaattgcatttctgcttctattgtcatttgtccttactatcatcatctatcagataatgaggaaaaggcagagaaaaacatctgc 39891429  T
Q  534 tgattcaacaattgagcaacttccaaaggt 563  Q
    |||||||||||||| |||| |||| |||||    
T  39891428 tgattcaacaattgtgcaatttccgaaggt 39891399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 234 - 563
Target Start/End: Complemental strand, 39876645 - 39876322
Alignment:
Q  234 ttctgttttagaattgttcaatgcttcttttaacaagttggagggcgaggtgcccatgcttggcgtttttcagaatgccagtagagttttattgactggc 333  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||| || |||||||| |||||||||| ||||||||||    
T  39876645 ttctgttttagaattgttcaatgcttcctttaacaagttggagggtgaggtccccatgcttggcgtcttccagaatgctagtagagtttcattgactggc 39876546  T
Q  334 aatgacaggctttgcggtggggtagcaaaactgaaactgaaagtttgcccaccaaaagatgtaaaaaagagaaaacaccatattcgccgcaagttgatca 433  Q
    ||| |||||||||| || ||||||||||||||||| ||| || ||||||| |||||| |||| ||||||||||| |||||||||||||||||||||||      
T  39876545 aataacaggctttgtggcggggtagcaaaactgaatctgcaactttgccctccaaaaaatgtgaaaaagagaaagcaccatattcgccgcaagttgat-- 39876448  T
Q  434 tcgtcatcatcttctcaattgcatttctttttctattgtcatttatccttattatcatcatctaccagaaaatgaagaaaaggcagagaaaagcatccaa 533  Q
        ||||||||||||||||||||||||| ||||| |||||||| ||  || |||||||||||| |||| ||||| |||||||||||||||||||||||     
T  39876447 ----catcatcttctcaattgcatttcttcttctagtgtcatttgtcgctactatcatcatctatcagataatgaggaaaaggcagagaaaagcatccac 39876352  T
Q  534 tgattcaacaattgagcaacttccaaaggt 563  Q
     |||||||||||||||||||||||||||||    
T  39876351 cgattcaacaattgagcaacttccaaaggt 39876322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 234 - 563
Target Start/End: Complemental strand, 39884777 - 39884445
Alignment:
Q  234 ttctgttttagaattgttcaatgcttcttttaacaagttggagggcgaggtgcccatgcttggcgtttttcagaatgccagtagagttttattgactggc 333  Q
    |||||| ||||||| ||||| |||||||||||||||||||||||| ||||| ||||||| ||||||||| || ||||| | |||||||| ||||||||||    
T  39884777 ttctgtgttagaatggttcagtgcttcttttaacaagttggagggtgaggttcccatgcatggcgttttccaaaatgctaatagagtttcattgactggc 39884678  T
Q  334 aatgacaggctttgcggtggggtagcaaaactgaaactgaaagtttgcccaccaaaagatgtaaaaaagagaaaacaccatattcgccgcaagttgatca 433  Q
    ||||||||||||||||| |||||||||||| |||| ||  |   ||||||||| |||  | | |||||||||||||||||| || ||||||| |||||||    
T  39884677 aatgacaggctttgcggcggggtagcaaaattgaatctacagcgttgcccacccaaaagtttgaaaaagagaaaacaccatgttggccgcaaattgatca 39884578  T
Q  434 tcgtcatcatc---ttctcaattgcatttctttttctattgtcatttatccttattatcatcatctaccagaaaatgaagaaaaggcagagaaaagcatc 530  Q
    || ||||||||   ||||||||||||||| || ||||||||||| || |||||| |||||||||||| |||| ||||| |||||||||||||||||||||    
T  39884577 tcatcatcatcatcttctcaattgcatttattcttctattgtcacttgtccttactatcatcatctatcagataatgaggaaaaggcagagaaaagcatc 39884478  T
Q  531 caatgattcaacaattgagcaacttccaaaggt 563  Q
    || ||||||||||||||||||| |||| |||||    
T  39884477 cactgattcaacaattgagcaatttccgaaggt 39884445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 36321853 - 36322022
Alignment:
Q  16 agatgaaatttaaactaaataaagttgtcgtattctattattttagaatagattttgtgtacctgtgtatttttaggtaggatttattttagaaatgaat 115  Q
    |||||||||| |||||||| ||| ||||||||||||||||||||  ||  |||||||  | | ||||||||||||| || |||| | ||| |||||||||    
T  36321853 agatgaaattaaaactaaagaaatttgtcgtattctattattttgaaaatgattttgcatgcttgtgtatttttagttaagattgactttggaaatgaat 36321952  T
Q  116 gaattgatatttctaaca--tgcttaccattgagcaaatgaatgtttttaaaaaatgtagtgaatgattg 183  Q
    | |||||| |||| || |  |||||| |||||| ||| |||||| |||||||||||||||||||||||||    
T  36321953 ggattgatctttcaaagagatgcttatcattgaacaagtgaatgcttttaaaaaatgtagtgaatgattg 36322022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 40 - 189
Target Start/End: Complemental strand, 7927128 - 7926979
Alignment:
Q  40 ttgtcgtattctattattttagaatagattttgtgtacctgtgtatttttaggtaggatttattttagaaatgaatgaattgatatttcta--acatgct 137  Q
    |||||| ||||||||  |||||||||  ||||  |||| ||| ||||||||| |||||||||||||  |||||||||||||||| ||||||  |||||||    
T  7927128 ttgtcgcattctattgctttagaata--ttttacgtacttgtttatttttagttaggatttattttcaaaatgaatgaattgatctttctaagacatgct 7927031  T
Q  138 taccattgagcaaatgaatgtttttaaaaaatgtagtgaatgattgggaatt 189  Q
    ||||||  | |||| || | |||  |||||| ||||||||||||||||||||    
T  7927030 taccatcaaacaaaagattttttaaaaaaaaagtagtgaatgattgggaatt 7926979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 102; Significance: 2e-50; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 15 - 189
Target Start/End: Original strand, 3386470 - 3386646
Alignment:
Q  15 gagatgaaatttaaactaaataaagttgtcgtattctattattttagaatagattttgtgtacctgtgtatttttaggtaggatttattttagaaatgaa 114  Q
    ||||||||||| |||||||||| | |||||||||||||||||||| |||| | ||||| ||||  |||||||||||| |||||||||| || ||||||||    
T  3386470 gagatgaaattaaaactaaatatatttgtcgtattctattattttggaattggttttgcgtactagtgtatttttagttaggatttatattggaaatgaa 3386569  T
Q  115 tgaattgatatttcta--acatgcttaccattgagcaaatgaatgtttttaaaaaatgtagtgaatgattgggaatt 189  Q
    ||||||||| ||||||  |||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||    
T  3386570 tgaattgatctttctaagacatgcttaccattaagcaaatgaatgtttttaaaaaatctagtgaatgattggaaatt 3386646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 11117098 - 11116916
Alignment:
Q  15 gagatgaaatttaaactaaataaagttgtcgtattctattattttagaatagattttgtgtacctgtgtatttttaggtaggatttattttagaaatgaa 114  Q
    ||||||||||| |||||||||||| |||||| |||||||| |||| ||||  |||||| |||  ||||||||||||| || ||||||||||  |||||||    
T  11117098 gagatgaaattaaaactaaataaatttgtcgcattctattgttttggaattaattttgcgtatttgtgtatttttagttatgatttattttcaaaatgaa 11116999  T
Q  115 tgaattgatatttcta--acatgcttaccattga---gcaaatgaatgttttt---aaaaaatgtagtgaatgattgggaatt 189  Q
    |||| | || ||||||  |||||||| |||||||   ||||||||||||||||   |||||||||||||||||||||| ||||    
T  11116998 tgaaataatctttctaagacatgcttgccattgaggcgcaaatgaatgtttttaaaaaaaaatgtagtgaatgattggaaatt 11116916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 16 - 184
Target Start/End: Complemental strand, 22961833 - 22961663
Alignment:
Q  16 agatgaaatttaaactaaataaagttgtcgtattctattattttagaatagattttgtgtacctgtgtatttttaggtaggatttattttagaaatgaat 115  Q
    |||||||||| |||||||||||| || | ||||| |||| |||| |||| ||||||| |||| | ||||||||||| |||||||||||||  ||||||||    
T  22961833 agatgaaattaaaactaaataaatttattgtattttattgttttggaattgattttgcgtacttatgtatttttagttaggatttattttgaaaatgaat 22961734  T
Q  116 gaattgatatttct---aacatgcttaccattgagcaaatgaatgtttttaaaaaatgtagtgaatgattgg 184  Q
    |||||||| ||| |   |||||| ||||||||||| |||| |||||||||  ||||||||||| ||||||||    
T  22961733 gaattgattttttttaaaacatgtttaccattgagaaaattaatgttttt-taaaatgtagtgtatgattgg 22961663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 23826560 - 23826730
Alignment:
Q  16 agatgaaatttaaactaaataaagttgtcgtattctattattttagaatagattttgtgtacctgtgtatttttaggtaggatttattttagaaatgaat 115  Q
    |||||||||| |||||||||||| || | ||||| |||| |||| |||| ||||||| |||| | ||||||||||| |||||||||||||  ||||||||    
T  23826560 agatgaaattaaaactaaataaatttattgtattttattgttttggaattgattttgcgtacttatgtatttttagttaggatttattttgaaaatgaat 23826659  T
Q  116 gaattgatatttct---aacatgcttaccattgagcaaatgaatgtttttaaaaaatgtagtgaatgattgg 184  Q
    |||||||| ||| |   |||||| ||||||||||| |||| |||||||||  ||||||||||| ||||||||    
T  23826660 gaattgattttttttaaaacatgtttaccattgagaaaattaatgttttt-taaaatgtagtgtatgattgg 23826730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 3e-49; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 16650842 - 16650668
Alignment:
Q  18 atgaaatttaaactaaataaagttgtcgtattctattattttagaatagattttgtgtacctgtgtatttttaggtaggatttattttagaaatgaatga 117  Q
    |||||||| |||||||||||| ||||| |||| ||||||||| |||| |||||||||||| ||||||||||||| |||||||||||||  ||||||||||    
T  16650842 atgaaattaaaactaaataaatttgtcatattttattattttggaattgattttgtgtacttgtgtatttttagttaggatttattttgaaaatgaatga 16650743  T
Q  118 attgatatttcta--acatgcttaccattgagcaaatgaatgtttttaaaaaatgtagtg-aatgattgggaatt 189  Q
    |||||| ||||||  |||||||||||||| | |||||||||||||||||||||||||| | ||||||||||||||    
T  16650742 attgatctttctaagacatgcttaccattaaccaaatgaatgtttttaaaaaatgtagcgaaatgattgggaatt 16650668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 17625202 - 17625028
Alignment:
Q  18 atgaaatttaaactaaataaagttgtcgtattctattattttagaatagattttgtgtacctgtgtatttttaggtaggatttattttagaaatgaatga 117  Q
    |||||||| |||||||||||| ||||| |||| ||||||||| |||| |||||||||||| ||||||||||||| |||||||||||||  ||||||||||    
T  17625202 atgaaattaaaactaaataaatttgtcatattttattattttggaattgattttgtgtacttgtgtatttttagttaggatttattttgaaaatgaatga 17625103  T
Q  118 attgatatttcta--acatgcttaccattgagcaaatgaatgtttttaaaaaatgtagtg-aatgattgggaatt 189  Q
    |||||| ||||||  |||||||||||||| | |||||||||||||||||||||||||| | ||||||||||||||    
T  17625102 attgatctttctaagacatgcttaccattaaccaaatgaatgtttttaaaaaatgtagcgaaatgattgggaatt 17625028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 44109715 - 44109539
Alignment:
Q  15 gagatgaaatttaaactaaataaagttgtcgtattctattattttagaatagattttgtgtacctgtgtatttttaggtaggatttattttagaaatgaa 114  Q
    ||||||||||| |||||||||||| |||||||| ||||||||||| ||||  |||||| | || ||| ||||||||| || |||||||||| ||||||||    
T  44109715 gagatgaaattaaaactaaataaatttgtcgtaatctattattttggaatcaattttgcgcacttgtatatttttagttatgatttattttggaaatgaa 44109616  T
Q  115 tgaattgatatttct--aacatgcttaccattgagcaaatgaatgtttttaaaaaatgtagtgaatgattgggaatt 189  Q
    ||||||||| |||||  |||| ||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||    
T  44109615 tgaattgatttttctaaaacaagcttaccatcgagcaaataaatgtttttaaaaaatgtagtgaatgattcggaatt 44109539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 28 - 189
Target Start/End: Original strand, 28009408 - 28009571
Alignment:
Q  28 aactaaataaagttgtcgtattctattattttagaatagattttgtgtacctgtgtatttttaggtaggatttattttagaaatgaatgaattgatattt 127  Q
    ||||||||||| |||| ||||||||||| ||| |||| |||| || |||| | ||||||||||| || |||||||||| |||||||||||||||||  ||    
T  28009408 aactaaataaatttgtagtattctattagtttggaattgattctgcgtacttatgtatttttagttatgatttattttggaaatgaatgaattgatgatt 28009507  T
Q  128 cta--acatgcttaccattgagcaaatgaatgtttttaaaaaatgtagtgaatgattgggaatt 189  Q
    |||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28009508 ctaggatatgcttaccattgagcaaatgaatgtttttaaaaaatgtagtgaatgattgggaatt 28009571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 21 - 189
Target Start/End: Complemental strand, 36337883 - 36337709
Alignment:
Q  21 aaatttaaactaaataaagttgtcgtattctattattttagaatagattttgtgtacctgtgtatttttaggtaggatttattttagaaatgaatgaatt 120  Q
    ||||| ||||||  |||| || ||||||||||||||||| |||| ||||||| || | ||||||||||||| |||||||||||||| |||||||||||||    
T  36337883 aaattaaaactacgtaaatttttcgtattctattattttggaattgattttgcgtgcttgtgtatttttagttaggatttattttaaaaatgaatgaatt 36337784  T
Q  121 gatatttct--aacatgcttaccattgagcaaatgaa----tgtttttaaaaaatgtagtgaatgattgggaatt 189  Q
    ||| ||| |   |||||||||| ||||||||||||||    | |||||||||||||||||||||||||| |||||    
T  36337783 gatctttatgagacatgcttactattgagcaaatgaatatttttttttaaaaaatgtagtgaatgattgagaatt 36337709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 44 - 183
Target Start/End: Complemental strand, 29655852 - 29655711
Alignment:
Q  44 cgtattctattattttagaatagattttgtgtacctgtgtatttttaggtaggatttattttagaaatgaatgaattgatatttctaa--catgcttacc 141  Q
    |||| |||||||||||  ||| ||||||| |||| ||||||||||||| ||| | ||||||| |||||||| |||||||| |||||||  |||||||| |    
T  29655852 cgtagtctattatttttcaattgattttgcgtacttgtgtatttttagttagaagttattttggaaatgaaagaattgatctttctaaaacatgcttatc 29655753  T
Q  142 attgagcaaatgaatgtttttaaaaaatgtagtgaatgattg 183  Q
    ||||||||||||||||| ||||||| ||||||||||||||||    
T  29655752 attgagcaaatgaatgtgtttaaaacatgtagtgaatgattg 29655711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 105
Target Start/End: Complemental strand, 9651789 - 9651710
Alignment:
Q  27 aaactaaataaagttgtcgtattctatt-attttagaatagattttgtgtacctgtgtatttttaggtaggatttatttt 105  Q
    |||||||||||| ||||||||||||||| ||||| ||||  |||  | |||| ||||||||||||| || ||||||||||    
T  9651789 aaactaaataaatttgtcgtattctattaattttggaatttattacgcgtacttgtgtatttttagttatgatttatttt 9651710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 179
Target Start/End: Complemental strand, 12678199 - 12678170
Alignment:
Q  150 aatgaatgtttttaaaaaatgtagtgaatg 179  Q
    ||||||||||||||||||||||||||||||    
T  12678199 aatgaatgtttttaaaaaatgtagtgaatg 12678170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 179
Target Start/End: Original strand, 12680481 - 12680514
Alignment:
Q  146 agcaaatgaatgtttttaaaaaatgtagtgaatg 179  Q
    |||||||||||||||||||||||||||| |||||    
T  12680481 agcaaatgaatgtttttaaaaaatgtagcgaatg 12680514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 15 - 177
Target Start/End: Complemental strand, 32108292 - 32108128
Alignment:
Q  15 gagatgaaatttaaactaaataaagttgtcgtattctattattttagaatagattttgtgtacctgtgtatttttaggtaggatttattttagaaatgaa 114  Q
    ||||||||||| |||||||||||||||  ||||||||||| |||| |||| ||||||| |||| ||||||||||||| ||  ||||||||||||||  ||    
T  32108292 gagatgaaattaaaactaaataaagttaccgtattctattgttttggaattgattttgcgtacttgtgtatttttagttaatatttattttagaaaataa 32108193  T
Q  115 tgaattgatatttcta--acatgcttaccattgagcaaatgaatgtttttaaaaaatgtagtgaa 177  Q
    ||||||||| ||||||  ||||| ||| |||||||||||||||||||||||||||||||||||||    
T  32108192 tgaattgatctttctaagacatgattatcattgagcaaatgaatgtttttaaaaaatgtagtgaa 32108128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 86; Significance: 8e-41; HSPs: 2)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 45801 - 45625
Alignment:
Q  15 gagatgaaatttaaactaaataaagttgtcgtattctattattttagaatagattttgtgtacctgtgtatttttaggtaggatttattttagaaatgaa 114  Q
    ||||| ||||| |||||||||||| |||||||||||||| ||||| ||||  ||||||  ||| | ||||||| ||| |||||||||||||  |||| ||    
T  45801 gagatcaaattaaaactaaataaatttgtcgtattctatcattttcgaatctattttgcatacttttgtatttatagttaggatttattttgaaaataaa 45702  T
Q  115 tgaattgatatttcta--acatgcttaccattgagcaaatgaatgtttttaaaaaatgtagtgaatgattgggaatt 189  Q
    |||||| |||||||||  |||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  45701 tgaattcatatttctaagacatacttaccattgagcaaatgaatgtttttaaaaaaagtagtgaatgattggaaatt 45625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 83 - 189
Target Start/End: Complemental strand, 52877 - 52769
Alignment:
Q  83 tatttttaggtaggatttattttagaaatgaatgaattgatatttctaaca--tgcttaccattgagcaaatgaatgtttttaaaaaatgtagtgaatga 180  Q
    |||||| || |||||||||||||| ||||||||||||| |||||||||| |  | ||||||||||||||||||||||||||| |||||||||  |||||     
T  52877 tattttcagttaggatttattttaaaaatgaatgaattcatatttctaagagatacttaccattgagcaaatgaatgttttttaaaaatgtaacgaatgg 52778  T
Q  181 ttgggaatt 189  Q
    |||||||||    
T  52777 ttgggaatt 52769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 26603999 - 26603823
Alignment:
Q  15 gagatgaaatttaaactaaataaagtt-gtcgtattctattattttagaatagattttgtgtacctgtgtatttttaggtaggatttattttagaaatga 113  Q
    ||||||||| | |||||||||||| || |||||||||||||||||| |||| ||||||  |||| ||||||||||||| |||||||||||||  || |||    
T  26603999 gagatgaaactaaaactaaataaaatttgtcgtattctattattttggaattgattttacgtacttgtgtatttttagttaggatttattttgaaagtga 26603900  T
Q  114 atgaattgatatttcta--acatgcttaccattgagcaaatgaatgtttttaaaaaatgtagtgaatgattgggaatt 189  Q
    ||  |||||| ||||||  ||||||||||||||||||||||||||||| || | |||||||||||||||||| |||||    
T  26603899 attgattgatctttctaagacatgcttaccattgagcaaatgaatgttctt-acaaatgtagtgaatgattgagaatt 26603823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 79 - 189
Target Start/End: Original strand, 19576012 - 19576125
Alignment:
Q  79 tgtgtatttttaggtaggatttattttagaaatgaatgaattgatatttcta--acatgcttaccattgagcaaatgaatgt-ttttaaaaaatgtagtg 175  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||| |||| |  |||||||| ||||||| ||||||||||| ||  |||||||||||||    
T  19576012 tgtgtatttttagttaggatttattttggaaatgaatgaattgatctttcaaagacatgcttgccattgatcaaatgaatgtcttaaaaaaaatgtagtg 19576111  T
Q  176 aatgattgggaatt 189  Q
    ||||||||| ||||    
T  19576112 aatgattggaaatt 19576125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 166
Target Start/End: Original strand, 37397584 - 37397619
Alignment:
Q  131 acatgcttaccattgagcaaatgaatgtttttaaaa 166  Q
    |||||||||||||| |||||||||||||||||||||    
T  37397584 acatgcttaccattaagcaaatgaatgtttttaaaa 37397619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 67 - 189
Target Start/End: Complemental strand, 20529104 - 20528980
Alignment:
Q  67 attttgtgtacctgtgtatttttaggtaggatttattttagaaatgaatgaattgatatttctaa--catgcttaccattgagcaaatgaatgtttttaa 164  Q
    |||||| |||| ||||||||||||| ||||||||||||| ||||||||| ||||||| |||||||  |||||| ||||||||||||||||||||||| ||    
T  20529104 attttgcgtacttgtgtatttttagttaggatttattttggaaatgaatcaattgatctttctaagacatgctcaccattgagcaaatgaatgttttaaa 20529005  T
Q  165 aaaatgtagtgaatgattgggaatt 189  Q
    ||||| |||||||||||||| ||||    
T  20529004 aaaatatagtgaatgattggaaatt 20528980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 48 - 184
Target Start/End: Complemental strand, 3509771 - 3509633
Alignment:
Q  48 ttctattattttagaatagattttgtgtacctgtgtatttttaggtaggatttattttagaaatgaatgaattgatatttctaa--catgcttaccattg 145  Q
    ||||||| |||| ||||  ||||||||||| |||| ||||| || | ||||||||||| ||||| |||||||| || |||||||  |||| |||||||||    
T  3509771 ttctattgttttggaatttattttgtgtacttgtggattttaagttgggatttattttggaaattaatgaatttatctttctaagacatgtttaccattg 3509672  T
Q  146 agcaaatgaatgtttttaaaaaatgtagtgaatgattgg 184  Q
     ||||||||||| ||||||||||||||||||||||||||    
T  3509671 ggcaaatgaatgcttttaaaaaatgtagtgaatgattgg 3509633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 31293079 - 31292931
Alignment:
Q  16 agatgaaatttaaactaaataaagttgtcgtattctattattttagaatagattttgtgtacctgtgtatttttaggtaggatttattttagaaatgaat 115  Q
    |||||||||| ||| |||||||| |||| ||||| |||||||||  ||| |||||||  ||| | |||||||||||  ||| ||||||||||||||||||    
T  31293079 agatgaaattaaaattaaataaatttgttgtattttattattttgaaattgattttgcttacttatgtatttttagtcaggttttattttagaaatgaat 31292980  T
Q  116 gaattgatatttcta--acatgcttaccattgagcaaatgaatgttttt 162  Q
    |||||||||||| ||  |||||||||||||| | ||||| |||||||||    
T  31292979 gaattgatatttataagacatgcttaccatttaacaaataaatgttttt 31292931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 105
Target Start/End: Complemental strand, 13522814 - 13522735
Alignment:
Q  27 aaactaaataaagttgtcgtattctatt-attttagaatagattttgtgtacctgtgtatttttaggtaggatttatttt 105  Q
    |||||||||||| ||||||||||||||| ||||| ||||  |||  | |||| ||||||||||||| || ||||||||||    
T  13522814 aaactaaataaatttgtcgtattctattaattttggaatttattacgcgtacttgtgtatttttagttatgatttatttt 13522735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0591 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 67 - 184
Target Start/End: Original strand, 3448 - 3567
Alignment:
Q  67 attttgtgtacctgtgta-tttttaggtaggatttattttagaaatgaatgaattgatatttcta--acatgcttaccattgagcaaatgaatgttttta 163  Q
    ||||||||||| |||||| ||||||| ||||||||  ||| ||||| ||||||||||| ||||||  ||||||||| |||||||||| |||||   ||||    
T  3448 attttgtgtacttgtgtattttttagttaggattt-gtttggaaattaatgaattgatctttctaagacatgcttatcattgagcaactgaatacgttta 3546  T
Q  164 aaaaatgtagtgaatgattgg 184  Q
    |||||| |||||| |||||||    
T  3547 aaaaatatagtgagtgattgg 3567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 29515616 - 29515562
Alignment:
Q  31 taaataaagttgtcgtattctattattttagaatagattttgtgtacctgtgtat 85  Q
    |||||||| ||||||||||||||| |||| |||| ||||||| |||| |||||||    
T  29515616 taaataaatttgtcgtattctattgttttcgaattgattttgggtacttgtgtat 29515562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 4806110 - 4806159
Alignment:
Q  15 gagatgaaatttaaactaaataaagttgtcgtattctattattttagaat 64  Q
    |||||||||||  ||||||||||| |||| ||||||||||||||| ||||    
T  4806110 gagatgaaattataactaaataaatttgttgtattctattattttggaat 4806159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 179
Target Start/End: Complemental strand, 21830 - 21797
Alignment:
Q  146 agcaaatgaatgtttttaaaaaatgtagtgaatg 179  Q
    |||||||||||||||||||||||| |||||||||    
T  21830 agcaaatgaatgtttttaaaaaatatagtgaatg 21797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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