View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17990_low_9 (Length: 544)
Name: NF17990_low_9
Description: NF17990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17990_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 6 - 447
Target Start/End: Original strand, 36904628 - 36905069
Alignment:
| Q |
6 |
atgtcgaagaatatgtaataaaaaagaacactggtggaagaagatccaataactgatggtaaaaaacacaattgcagcggtggtattagagcctcgacag |
105 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
36904628 |
atgtcaaaaaatatgtaataaaaaagaacactggtggaagaagatccaataactgatggtaaaaaacacaattgcagcggtggtattagagcctcaacag |
36904727 |
T |
|
| Q |
106 |
ttaaaactaatcagaaaatagacgctaggaatgttatttcaatttcatctacttcgacatctttgtccttgaaatcaacctcctaaacaatagcctgttt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36904728 |
ttaaaactaatcagaaaatagacgctaggaatgttatttcaatttcatctacttcgacatctttgtccttgaaatcaacctcctaaacaatagcctgttt |
36904827 |
T |
|
| Q |
206 |
acccccaagatgaatgctttgttcttgctcatgctctaccttctcaactcttatcgtgtgcaacatcaatgatcaagacagtctatggataacgttactg |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
36904828 |
acccccaagatgaatgctttgttcttgctcatgctctaccttctcaactcttatcgtgtgcaacatcaatgatcaagacagtctatggataacgctactg |
36904927 |
T |
|
| Q |
306 |
tcattctccatatcagatgaggaatataagtgttctatagacaccgcaccctctgtctctgcctcaatagatcccttttttgcctcaaaatttgaaatta |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||| |
|
|
| T |
36904928 |
tcattctccatatcagatgaggaatataagtgttctacagacaccgcaccctctgtctctgcctcaatagatccttattttgcctcaaaatttgatatta |
36905027 |
T |
|
| Q |
406 |
catcaagtaccacaaaccatcatattatcattcctaaaggca |
447 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36905028 |
catcaagtaccacaaaccatcatattatcattcctaaaggca |
36905069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 485 - 526
Target Start/End: Original strand, 36905067 - 36905108
Alignment:
| Q |
485 |
gcaagacgagatattcaaacccggaaaccatcataatgaatt |
526 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36905067 |
gcaagacgagatattcaaacccggaaaccatcataatgaatt |
36905108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 401; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 15 - 447
Target Start/End: Original strand, 22767632 - 22768064
Alignment:
| Q |
15 |
aatatgtaataaaaaagaacactggtggaagaagatccaataactgatggtaaaaaacacaattgcagcggtggtattagagcctcgacagttaaaacta |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
22767632 |
aatatgtaataaaaaagaacactggtggaagaagatccaataactgatggtaaaaaacacaattgcagcggtggtattagagcatcaacagttaaaacta |
22767731 |
T |
|
| Q |
115 |
atcagaaaatagacgctaggaatgttatttcaatttcatctacttcgacatctttgtccttgaaatcaacctcctaaacaatagcctgtttacccccaag |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22767732 |
atcagaaaatagacgctaggaatgttatttcaatttcatctacttcgacatctttgtccttgaaatcaacctcctaaacaatagcctgtttacccccaag |
22767831 |
T |
|
| Q |
215 |
atgaatgctttgttcttgctcatgctctaccttctcaactcttatcgtgtgcaacatcaatgatcaagacagtctatggataacgttactgtcattctcc |
314 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
22767832 |
atgaatgctttgttctttctcatgctctaccttctcaactcttatcgtgtgcaacatcaatgatcaagacagtctatggataacgctactgtcattctcc |
22767931 |
T |
|
| Q |
315 |
atatcagatgaggaatataagtgttctatagacaccgcaccctctgtctctgcctcaatagatcccttttttgcctcaaaatttgaaattacatcaagta |
414 |
Q |
| |
|
|||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
22767932 |
atatcagatgagaaatacaagtgttctacagacaccgcaccctctgtctctgcctcaatagatcccttttttgcctcaaaatttgatattacatcaagta |
22768031 |
T |
|
| Q |
415 |
ccacaaaccatcatattatcattcctaaaggca |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
22768032 |
ccacaaaccatcatattatcattcctaaaggca |
22768064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 15 - 152
Target Start/End: Original strand, 23082929 - 23083066
Alignment:
| Q |
15 |
aatatgtaataaaaaagaacactggtggaagaagatccaataactgatggtaaaaaacacaattgcagcggtggtattagagcctcgacagttaaaacta |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
23082929 |
aatatgtaataaaaaagaacactggtggaagaagatccaataactgatggtaaaaaacacaattgcagcggtggtattagagcttcaacagttaaaacta |
23083028 |
T |
|
| Q |
115 |
atcagaaaatagacgctaggaatgttatttcaatttca |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23083029 |
atcagaaaatagacgctaggaatgttatttcaatttca |
23083066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 485 - 526
Target Start/End: Original strand, 22768062 - 22768103
Alignment:
| Q |
485 |
gcaagacgagatattcaaacccggaaaccatcataatgaatt |
526 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22768062 |
gcaagacgagatattcaaacccggaaaccatcataatgaatt |
22768103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University