View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17991_high_10 (Length: 430)
Name: NF17991_high_10
Description: NF17991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17991_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 20 - 423
Target Start/End: Original strand, 33226903 - 33227304
Alignment:
| Q |
20 |
ctgtgtataacaaatgtaataaacataggtactccaaaactgaactttaatagattgatgtaaccatttttgtcatataatatcgttaatgagaattgaa |
119 |
Q |
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| T |
33226903 |
ctgtgtataacaaatgtaataaacataggtactccaaaactgaactttaatagattgatgtaaccatttttgtcatataatatcgttaatgagaatcaaa |
33227002 |
T |
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| Q |
120 |
cttctgaccaacgtgcggagtatgacaccgaccaagtctcagaatccatatctattcctatacgagcaccggttcccacatatatttcctggtaatgatt |
219 |
Q |
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| T |
33227003 |
cttctgaccaacgtgcggagtatgacaccgaccaagtctcagaatccatatctattcctatacgagcaccggttcccacatatatttcctggtaatgatt |
33227102 |
T |
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| Q |
220 |
aagaaatcttccatttttcagctcatggcgaagactatttcccattgaatatgtaaatgttttcacaacaacgttaacttaannnnnnnnnnnnnnngta |
319 |
Q |
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| T |
33227103 |
aagaaatcttccatttttcagctcatggcgaagactatttcccattgaatatgtaaatgttttcacaacaacgttaacttaa--tttttttttttttgta |
33227200 |
T |
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| Q |
320 |
tcgtaaatttaattttcacaatcatgcaaaatataattcaatgaacaatgatatttcgacacttacaatttctcaacattcattctacacttaaattcat |
419 |
Q |
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| T |
33227201 |
tcgtaaatttaattttcacaatcatgcaaaatataattcaatgaacaatgatatttcaacacttacaatttctcaacattcattctacacttaaattcat |
33227300 |
T |
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| Q |
420 |
ctct |
423 |
Q |
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|||| |
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| T |
33227301 |
ctct |
33227304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 220 - 421
Target Start/End: Original strand, 33224187 - 33224386
Alignment:
| Q |
220 |
aagaaatcttccatttt---tcagctcatggcgaagactatttcccattgaatatgtaaatgttttcacaacaacgttaacttaannnnnnnnnnnnnnn |
316 |
Q |
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||||||||||||||||| |||| |||||| ||| ||||||||||||||||||| ||| ||||||| ||||||||||||||||| |
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| T |
33224187 |
aagaaatcttccattttctttcaggtcatggtgaaaactatttcccattgaatatataa-tgttttcgcaacaacgttaacttaaatatatatttatttt |
33224285 |
T |
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| Q |
317 |
gtatcgtaaatttaattttcacaatcatgcaaaatataattcaatgaacaatgatatttcgacacttacaatttctcaacattcattctacacttaaatt |
416 |
Q |
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||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| | |||||||||| |||||||||| ||||||||| |
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| T |
33224286 |
-tatcgtaaatttaatttgcacaatcatgcaaa---taattcaatgaacaatgatatttcgacactcataatttctcaaaattcattctatacttaaatt |
33224381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 61 - 160
Target Start/End: Original strand, 33223981 - 33224083
Alignment:
| Q |
61 |
gaactttaatagattgatgtaaccattt---ttgtcatataatatcgttaatgagaattgaacttctgaccaacgtgcggagtatgacaccgaccaagtc |
157 |
Q |
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||||||||| |||||||||| |||||| | ||||||||||||| |||||||||| ||||||||||| ||| ||||||||||||||| ||||||||| |
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| T |
33223981 |
gaactttaagagattgatgtcaccattaacgtcgtcatataatatcattaatgagaaatgaacttctgataaacctgcggagtatgacacagaccaagtc |
33224080 |
T |
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| Q |
158 |
tca |
160 |
Q |
| |
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||| |
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|
| T |
33224081 |
tca |
33224083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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