View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17991_high_26 (Length: 352)
Name: NF17991_high_26
Description: NF17991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17991_high_26 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 333
Target Start/End: Complemental strand, 46038860 - 46038539
Alignment:
| Q |
13 |
aaaatactagcacattcttaaaaacacccttnnnnnnnnttgtttcctaagaatgaaatatcactnnnnnnntaaaattatattaattaaagagtatttt |
112 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
46038860 |
aaaatactagcacattcttaaaaacacccttaaaaaaaattgtttcctaagaatgaaatgtcactaaaaaaataaaattatattaattaaagagtatttt |
46038761 |
T |
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| Q |
113 |
agaatatgagtctttaaatgagtcatattagcttatattttaaaaaagtaagcacnnnnnnnatatctttatttgagattgaaattaggggtgtcaattt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
46038760 |
agaatatgagtctttaaatgagtcatattagcttatattttaaaaaagtaagcaatttttttatatctttatttgagattgaaattaggggtgtcaattt |
46038661 |
T |
|
| Q |
213 |
catctctaaatggggatctaaacgagtatcgtcccatttgaagattcgtagaatgagaattttttctattgaagatgggggagaaa-tttcccccgataa |
311 |
Q |
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||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
46038660 |
catctctaaatggggatttaaacgagtatcgtctcatttgaagattcgtaaaatgagaattttttctattgaagatgggggagaaattttcccccgataa |
46038561 |
T |
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| Q |
312 |
tagtgcgggaacaagatcatac |
333 |
Q |
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||||||||| |||||||||||| |
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| T |
46038560 |
tagtgcggggacaagatcatac |
46038539 |
T |
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