View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17991_high_29 (Length: 349)

Name: NF17991_high_29
Description: NF17991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17991_high_29
NF17991_high_29
[»] chr6 (20 HSPs)
chr6 (144-333)||(34883441-34883636)
chr6 (16-123)||(31110759-31110864)
chr6 (16-118)||(17598554-17598656)
chr6 (16-96)||(11427640-11427720)
chr6 (16-119)||(31976247-31976350)
chr6 (16-127)||(23128125-23128236)
chr6 (16-121)||(30341358-30341463)
chr6 (16-128)||(15832567-15832679)
chr6 (16-120)||(15990040-15990144)
chr6 (16-96)||(32869700-32869780)
chr6 (16-118)||(4231548-4231650)
chr6 (16-118)||(15508022-15508124)
chr6 (16-118)||(29857827-29857929)
chr6 (16-121)||(6209463-6209568)
chr6 (16-113)||(22880656-22880753)
chr6 (50-118)||(31109432-31109500)
chr6 (16-122)||(12732478-12732584)
chr6 (53-119)||(22422053-22422119)
chr6 (16-113)||(28536486-28536581)
chr6 (16-118)||(31953028-31953130)
[»] chr3 (32 HSPs)
chr3 (16-124)||(11347920-11348028)
chr3 (16-118)||(26141530-26141632)
chr3 (16-118)||(47531865-47531967)
chr3 (16-120)||(27714889-27714993)
chr3 (16-120)||(41189762-41189866)
chr3 (16-122)||(49607410-49607516)
chr3 (16-119)||(17470404-17470507)
chr3 (16-118)||(51419358-51419460)
chr3 (16-118)||(53982011-53982113)
chr3 (16-96)||(26754717-26754797)
chr3 (16-120)||(54868893-54868997)
chr3 (16-119)||(8956761-8956864)
chr3 (16-95)||(31456712-31456791)
chr3 (16-118)||(33644200-33644302)
chr3 (16-114)||(52629304-52629402)
chr3 (16-120)||(11907369-11907473)
chr3 (16-64)||(25407145-25407193)
chr3 (16-119)||(24699952-24700055)
chr3 (16-119)||(35536625-35536728)
chr3 (50-120)||(11095385-11095455)
chr3 (16-118)||(14623837-14623939)
chr3 (16-118)||(20764913-20765015)
chr3 (16-113)||(13898053-13898150)
chr3 (16-96)||(8076415-8076495)
chr3 (16-88)||(9563029-9563101)
chr3 (16-120)||(33118849-33118953)
chr3 (44-120)||(35093583-35093659)
chr3 (16-96)||(36331327-36331407)
chr3 (16-96)||(48587089-48587169)
chr3 (50-121)||(36707456-36707527)
chr3 (60-106)||(32605956-32606002)
chr3 (16-118)||(45058551-45058652)
[»] chr2 (32 HSPs)
chr2 (16-123)||(42257188-42257295)
chr2 (16-118)||(40613900-40614002)
chr2 (16-120)||(9058478-9058582)
chr2 (16-124)||(38273140-38273248)
chr2 (16-119)||(5574486-5574589)
chr2 (16-119)||(33436210-33436313)
chr2 (16-122)||(45097733-45097839)
chr2 (16-113)||(19930818-19930915)
chr2 (16-120)||(10249380-10249484)
chr2 (16-123)||(33436098-33436205)
chr2 (16-118)||(13438343-13438445)
chr2 (16-118)||(17473020-17473122)
chr2 (16-118)||(27864704-27864806)
chr2 (16-118)||(28381653-28381755)
chr2 (16-113)||(28863460-28863557)
chr2 (18-119)||(32505648-32505749)
chr2 (18-118)||(4060685-4060785)
chr2 (20-119)||(2533123-2533221)
chr2 (16-118)||(38732354-38732456)
chr2 (16-118)||(40701478-40701580)
chr2 (16-113)||(41575142-41575240)
chr2 (16-96)||(2997485-2997565)
chr2 (16-119)||(7465733-7465836)
chr2 (16-123)||(20700810-20700917)
chr2 (16-119)||(36168835-36168938)
chr2 (16-69)||(13365402-13365455)
chr2 (16-120)||(30915461-30915565)
chr2 (50-121)||(38882846-38882916)
chr2 (20-118)||(43490121-43490219)
chr2 (53-118)||(17820039-17820104)
chr2 (16-68)||(3034981-3035033)
chr2 (16-68)||(3154193-3154245)
[»] chr5 (24 HSPs)
chr5 (16-119)||(6679697-6679800)
chr5 (16-118)||(28177775-28177877)
chr5 (16-119)||(2740273-2740376)
chr5 (16-122)||(13811648-13811754)
chr5 (16-118)||(26720516-26720618)
chr5 (16-118)||(26990265-26990367)
chr5 (16-118)||(35943890-35943992)
chr5 (18-118)||(14831814-14831914)
chr5 (16-120)||(15409608-15409712)
chr5 (16-119)||(2252166-2252269)
chr5 (16-122)||(18520882-18520988)
chr5 (16-118)||(35785199-35785301)
chr5 (16-118)||(40145407-40145509)
chr5 (16-121)||(3921263-3921368)
chr5 (18-122)||(31008984-31009088)
chr5 (20-95)||(42414304-42414379)
chr5 (16-118)||(33149636-33149738)
chr5 (18-118)||(20073516-20073616)
chr5 (16-120)||(36732940-36733044)
chr5 (16-95)||(39557515-39557594)
chr5 (16-106)||(33825322-33825412)
chr5 (16-120)||(39688895-39688999)
chr5 (50-119)||(41470448-41470517)
chr5 (44-96)||(16327923-16327975)
[»] chr1 (28 HSPs)
chr1 (16-121)||(32813244-32813349)
chr1 (16-118)||(27564733-27564835)
chr1 (18-119)||(51898683-51898784)
chr1 (16-119)||(37926436-37926539)
chr1 (16-122)||(8346386-8346492)
chr1 (16-120)||(49811525-49811629)
chr1 (16-122)||(5958998-5959104)
chr1 (16-113)||(44548374-44548471)
chr1 (19-123)||(37649193-37649297)
chr1 (20-120)||(38632323-38632423)
chr1 (18-121)||(2581912-2582015)
chr1 (16-122)||(38595150-38595256)
chr1 (16-118)||(41608491-41608593)
chr1 (20-118)||(48716284-48716382)
chr1 (16-124)||(26440728-26440836)
chr1 (16-118)||(43132-43234)
chr1 (16-118)||(9474874-9474976)
chr1 (16-118)||(47452318-47452420)
chr1 (16-118)||(50590998-50591100)
chr1 (20-113)||(26274437-26274530)
chr1 (20-117)||(44453980-44454077)
chr1 (16-96)||(3000341-3000421)
chr1 (16-96)||(50630480-50630560)
chr1 (16-91)||(41758832-41758907)
chr1 (18-96)||(11152378-11152456)
chr1 (18-69)||(3302533-3302584)
chr1 (18-75)||(48489343-48489400)
chr1 (49-121)||(23597122-23597194)
[»] chr7 (33 HSPs)
chr7 (16-118)||(19329842-19329944)
chr7 (16-113)||(3784000-3784097)
chr7 (16-117)||(35522877-35522978)
chr7 (18-122)||(7727902-7728006)
chr7 (16-120)||(19436185-19436289)
chr7 (16-119)||(3434561-3434664)
chr7 (16-96)||(3694389-3694469)
chr7 (16-119)||(22343360-22343463)
chr7 (16-119)||(36361911-36362014)
chr7 (16-122)||(35468853-35468959)
chr7 (16-121)||(40957704-40957809)
chr7 (16-120)||(7389387-7389491)
chr7 (16-120)||(38044195-38044299)
chr7 (16-95)||(8238236-8238315)
chr7 (16-119)||(36362025-36362128)
chr7 (16-127)||(41915732-41915843)
chr7 (16-118)||(21234401-21234503)
chr7 (16-118)||(32564424-32564526)
chr7 (16-118)||(35137533-35137635)
chr7 (24-118)||(46374808-46374902)
chr7 (16-113)||(32951491-32951588)
chr7 (16-120)||(8080381-8080485)
chr7 (16-120)||(36208171-36208275)
chr7 (16-119)||(26296643-26296746)
chr7 (16-127)||(38837208-38837319)
chr7 (16-123)||(40846111-40846218)
chr7 (16-119)||(46033799-46033902)
chr7 (16-118)||(4999512-4999614)
chr7 (16-118)||(38267040-38267142)
chr7 (49-122)||(18207176-18207249)
chr7 (16-88)||(16374822-16374894)
chr7 (42-122)||(45223038-45223118)
chr7 (16-118)||(41423682-41423784)
[»] chr8 (27 HSPs)
chr8 (18-119)||(37038478-37038579)
chr8 (16-119)||(32032724-32032826)
chr8 (16-122)||(5957826-5957932)
chr8 (16-118)||(43414579-43414681)
chr8 (16-96)||(40423941-40424021)
chr8 (16-118)||(15048180-15048281)
chr8 (16-118)||(15197333-15197435)
chr8 (16-116)||(10621085-10621185)
chr8 (16-118)||(504119-504221)
chr8 (16-118)||(1179938-1180040)
chr8 (16-122)||(16056399-16056505)
chr8 (16-122)||(16383373-16383479)
chr8 (16-96)||(14547944-14548024)
chr8 (16-120)||(15258927-15259031)
chr8 (16-120)||(24307791-24307895)
chr8 (16-118)||(12831047-12831149)
chr8 (16-118)||(23122595-23122697)
chr8 (16-118)||(34012294-34012396)
chr8 (16-120)||(4854861-4854965)
chr8 (16-120)||(34307214-34307318)
chr8 (16-120)||(42221513-42221617)
chr8 (16-118)||(30479472-30479574)
chr8 (16-121)||(10284629-10284734)
chr8 (16-96)||(8841430-8841510)
chr8 (63-119)||(25838196-25838252)
chr8 (55-122)||(24307625-24307692)
chr8 (16-69)||(9122234-9122287)
[»] scaffold0321 (1 HSPs)
scaffold0321 (16-127)||(10107-10218)
[»] chr4 (25 HSPs)
chr4 (16-118)||(41236347-41236449)
chr4 (16-122)||(50052426-50052532)
chr4 (18-118)||(50526171-50526271)
chr4 (16-120)||(55475189-55475293)
chr4 (16-127)||(19670714-19670825)
chr4 (16-119)||(47986207-47986310)
chr4 (16-86)||(56300163-56300233)
chr4 (20-120)||(29547961-29548061)
chr4 (16-120)||(32766956-32767060)
chr4 (16-118)||(6034044-6034146)
chr4 (16-122)||(42044365-42044471)
chr4 (16-121)||(29239883-29239988)
chr4 (16-120)||(48183047-48183151)
chr4 (16-118)||(40574779-40574881)
chr4 (16-119)||(44536744-44536846)
chr4 (16-119)||(50813890-50813993)
chr4 (16-122)||(480445-480551)
chr4 (16-118)||(11511460-11511562)
chr4 (16-118)||(31910192-31910294)
chr4 (16-96)||(17983741-17983821)
chr4 (16-95)||(29977908-29977987)
chr4 (16-118)||(3481654-3481756)
chr4 (16-118)||(8343161-8343263)
chr4 (16-69)||(41823931-41823984)
chr4 (20-118)||(54473535-54473633)
[»] scaffold1268 (1 HSPs)
scaffold1268 (16-118)||(927-1029)
[»] scaffold1267 (1 HSPs)
scaffold1267 (16-118)||(927-1029)
[»] scaffold0237 (1 HSPs)
scaffold0237 (16-118)||(4029-4131)
[»] scaffold0018 (1 HSPs)
scaffold0018 (16-93)||(152523-152600)
[»] scaffold0316 (1 HSPs)
scaffold0316 (16-95)||(17077-17156)


Alignment Details
Target: chr6 (Bit Score: 157; Significance: 2e-83; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 144 - 333
Target Start/End: Complemental strand, 34883636 - 34883441
Alignment:
Q  144 agtggtaagacccatatatattttatctaatgaaaaagtaaattttagaaagaatacgttaaaacggatgctatttgtgttactctattaatgattagga 243  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34883636 agtggtaagacccatatatgttttatctaatgaaaaagtaaatttgagaaagaatacgttaaaatggatgctatttgtgttactctattaatgattagga 34883537  T
Q  244 aaagtgaggggtgaaaatagcaatatatgtat------ggaagttaaacaacaatgagatggaaagaggataagaagccacgtaatatgcatgtaa 333  Q
    ||||||||||||||||||||||||||||||||      |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34883536 aaagtgaggggtgaaaatagcaatatatgtatggaattggaaattaaacaacaatgagatggaaagaggataagaagccacgtaatatgcatgtaa 34883441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 31110759 - 31110864
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    |||||||||||||||||||||| ||||| || | ||||||||||||||  ||||| ||||||| | |||||||||||||||  |||||||| ||||||||    
T  31110759 agagaaagtgtgcttgtgcagggtccatgtggttacgtgtcagatttt--tgtgagtgtcaaagggtgtattgccacctaaggatgtctatgtatcataa 31110856  T
Q  116 ctctttta 123  Q
    ||||||||    
T  31110857 ctctttta 31110864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 17598656 - 17598554
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| || ||||  |||  ||||||||||||||||||||  |||||||||||||||||||||||||   ||||||| |||||| |    
T  17598656 agagaaagtgtgcttgtgcggggtccacgtgacaacgtgtcagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgtatcatta 17598557  T
Q  116 ctc 118  Q
    |||    
T  17598556 ctc 17598554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 11427720 - 11427640
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaa 96  Q
    ||||||||||||||||||| |||||||  |||  ||||||||||||||||||||  ||||||| |||||||||||||||||    
T  11427720 agagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgccacctaa 11427640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 31976350 - 31976247
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| || | ||| ||| |||||||||||||||||||||  ||| ||| | | |||||||||||||  |||||||| ||||||||    
T  31976350 agagaaagtgtgcttgtgcggggttcatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtatattgccacctaaggatgtctatgtatcataa 31976251  T
Q  116 ctct 119  Q
    ||||    
T  31976250 ctct 31976247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 23128125 - 23128236
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||  |||||||  |||  ||||||||||||||||||||  ||||||| ||||||||  ||| ||||  ||||||| |||||| |    
T  23128125 agagaaagtgtgcttgtgtgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattatcacataaaggtgtctatatatcatta 23128224  T
Q  116 ctcttttaaaaa 127  Q
     |||||||||||    
T  23128225 ttcttttaaaaa 23128236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 30341358 - 30341463
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||| ||||||| || ||||||||  ||| |||||||||||||||||  ||||||  | |||||||||||||||   ||| ||| ||||||||    
T  30341358 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 30341457  T
Q  116 ctcttt 121  Q
    ||||||    
T  30341458 ctcttt 30341463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 128
Target Start/End: Complemental strand, 15832679 - 15832567
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||| |||  ||||||||||||||  |||  |||||||| |||||||||||  ||||||| ||| ||||| ||||||||  ||||||| |||||| |    
T  15832679 agagaaaatgtatttgtgcaggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaatgatttattgtcacctaaaggtgtctatgtatcatta 15832580  T
Q  116 ctcttttaaaaat 128  Q
    ||||||| |||||    
T  15832579 ctcttttgaaaat 15832567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 15990040 - 15990144
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||| ||||||| || ||||||||  ||| |||||||||||||||||  ||||||  | |||||||||||||||   ||| ||| ||||||||    
T  15990040 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 15990139  T
Q  116 ctctt 120  Q
    |||||    
T  15990140 ctctt 15990144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 32869780 - 32869700
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaa 96  Q
    ||||||||||||||||||| || ||||  |||  ||||||||||||||||||||  ||||||| | |||||||||||||||    
T  32869780 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaa 32869700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 4231650 - 4231548
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||| ||||||| || ||||||||  |||||||||||||||||||||  || |||  | |||||||||||||||  |||| |||  |||||||    
T  4231650 agagaaagtgtacttgtgcggggtccatatggccacgtgtcagatttttgtgtgggtggcaaggggtgtattgccacctaatgatgtttatgaatcataa 4231551  T
Q  116 ctc 118  Q
    |||    
T  4231550 ctc 4231548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 15508022 - 15508124
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||| ||||||| || ||||||||  ||| |||||||||||||||||  ||||||  | |||||||||||||||   ||| ||| ||||||||    
T  15508022 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 15508121  T
Q  116 ctc 118  Q
    |||    
T  15508122 ctc 15508124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 29857929 - 29857827
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||| ||| |||||||  | |  ||||||||||||||||||||  ||| ||||| |||||||||| |||||  ||||||| |||||| |    
T  29857929 agagaaagtgtgcttatgcgggatccacgtaactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgccatctaaaggtgtctatgtatcatta 29857830  T
Q  116 ctc 118  Q
    |||    
T  29857829 ctc 29857827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 6209463 - 6209568
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    |||||||||||||| |||| || ||||  |||  ||||| ||||||||||||||| |||||||   |||||||||||||||   ||||||| |||||| |    
T  6209463 agagaaagtgtgctagtgcggggtccacgtgactacgtgacagatttttgtgtgagtgtcaaatagtgtattgccacctaagggtgtctatgtatcatta 6209562  T
Q  116 ctcttt 121  Q
    ||||||    
T  6209563 ctcttt 6209568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 22880656 - 22880753
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcat 113  Q
    ||||||||||||||||||| || ||||  |||  |||||||||| |||||||||  ||||||| | |||||||||||||||   ||||||| ||||||    
T  22880656 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagaattttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 22880753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 31109432 - 31109500
Alignment:
Q  50 acgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataactc 118  Q
    |||||||||||||||||||| |||||||| | |||||||||||||||   |||||||| ||||| ||||    
T  31109432 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtgtctattaatcattactc 31109500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 12732584 - 12732478
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||| ||||||| ||  ||||||| ||   |||||||||||||||||||||  ||||||    | ||||||||| ||| ||||||||| |||||| |    
T  12732584 agagaaaatgtgcttatgtgggatccacatagccacgtgtcagatttttgtgtgggtgtcaatgattatattgccacttaagaatgtctatgtatcatta 12732485  T
Q  116 ctctttt 122  Q
    |||||||    
T  12732484 ctctttt 12732478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 119
Target Start/End: Original strand, 22422053 - 22422119
Alignment:
Q  53 tgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataactct 119  Q
    ||||||| |||||| ||| |||||| |||| |||||||||||||  |||||||| |||||| |||||    
T  22422053 tgtcagaattttgtatgagtgtcaagagatctattgccacctaaggatgtctatgtatcattactct 22422119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 28536486 - 28536581
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcat 113  Q
    ||||||||||||||||||  || |||| |||| |  ||||||||||||||||||  ||||||  | |||||||||||||||  |||| ||| ||||||    
T  28536486 agagaaagtgtgcttgtgtggggtccacatgacc--gtgtcagatttttgtgtgggtgtcaagggttgtattgccacctaaggatgtttatgtatcat 28536581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 31953028 - 31953130
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    |||||||||||| |||||   | |||| |||| ||| |||||||||||| ||||  ||||||  | |||||||||||||||  |||||||| |||||| |    
T  31953028 agagaaagtgtgtttgtgtgaggtccacatgaacacatgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtctatctatcatta 31953127  T
Q  116 ctc 118  Q
    |||    
T  31953128 ctc 31953130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 11347920 - 11348028
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||| |||||| ||||| ||  ||||||||||||||||||||| |||||||| ||||||||| |||||||  |||||||| ||||||||    
T  11347920 agagaaagtgtgcttatgcagggtccatgtggccacgtgtcagatttttgtgtggatgtcaaaggatgtattgtcacctaaggatgtctatgtatcataa 11348019  T
Q  116 ctcttttaa 124  Q
    |||||||||    
T  11348020 ctcttttaa 11348028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 26141530 - 26141632
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||  || ||||| ||| |||||||||||||||||||||  ||| ||| | |||||||||||||||  |||||||| ||||||||    
T  26141530 agagaaagtgtgcttgtgtggggtccatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataa 26141629  T
Q  116 ctc 118  Q
    |||    
T  26141630 ctc 26141632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 47531967 - 47531865
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| || | ||||||  ||||||||||||| ||||||| |||| ||||| |||||||||| ||||  |||||||| ||||||||    
T  47531967 agagaaagtgtgcttgtgcggggttcatatggccacgtgtcagattcttgtgtggatgttaaaaggtgtattgccatctaaggatgtctatgtatcataa 47531868  T
Q  116 ctc 118  Q
    |||    
T  47531867 ctc 47531865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 27714889 - 27714993
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| || |||| ||||  ||||||||||||||||||||  ||||||| | |||||| |||||||||  ||||||| |||||| |    
T  27714889 agagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaaggtgtctatgtatcatta 27714988  T
Q  116 ctctt 120  Q
    |||||    
T  27714989 ctctt 27714993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 41189762 - 41189866
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| || ||||| ||  ||||||||| |||||| ||||  ||||||| |||||||||||||||||  |||| ||| ||||||||    
T  41189762 agagaaagtgtgcttgtgcggggtccatgtggccacgtgtcaaatttttatgtgggtgtcaaatgatgtattgccacctaaggatgtatatgtatcataa 41189861  T
Q  116 ctctt 120  Q
    |||||    
T  41189862 ctctt 41189866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 49607516 - 49607410
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||  |||||||  |||  ||||||||||||||||||||  ||||||| | |||||||||||||||   ||||||| |||||| |    
T  49607516 agagaaagtgtgcttgtgtgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 49607417  T
Q  116 ctctttt 122  Q
    |||||||    
T  49607416 ctctttt 49607410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 17470507 - 17470404
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||  || ||||  |||  ||||||||||||||||||||  ||| ||||| ||||||||||||||||  ||||||| |||||| |    
T  17470507 agagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgccacctaaaggtgtctatgtatcatta 17470408  T
Q  116 ctct 119  Q
    ||||    
T  17470407 ctct 17470404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 51419358 - 51419460
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| || || || ||  |||||||||||||||||||||  ||| ||| ||||||||| || ||||  |||||||| ||||||||    
T  51419358 agagaaagtgtgcttgtgcggggtctatgtggccacgtgtcagatttttgtgtgggtgttaaaggatgtattgtcatctaaggatgtctatgtatcataa 51419457  T
Q  116 ctc 118  Q
    |||    
T  51419458 ctc 51419460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 53982113 - 53982011
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| || ||||  |||  ||||||||||||||||||||  ||||||| | |||||||||||||||   ||||||| |||||| |    
T  53982113 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 53982014  T
Q  116 ctc 118  Q
    |||    
T  53982013 ctc 53982011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 26754797 - 26754717
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaa 96  Q
    ||||||| ||||||||||| || ||||| ||| ||| ||||||||||||||||| ||||| || | |||||||||||||||    
T  26754797 agagaaaatgtgcttgtgcggggtccatgtgaccacatgtcagatttttgtgtggatgtccaagggtgtattgccacctaa 26754717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 54868893 - 54868997
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    |||||||||||| |||||| || ||||  | |  ||||||||||||||||||||  ||||||||| |||||||||||||||   ||||||| |||||| |    
T  54868893 agagaaagtgtgattgtgcggggtccacgtaactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcatta 54868992  T
Q  116 ctctt 120  Q
    |||||    
T  54868993 ctctt 54868997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 8956864 - 8956761
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    |||| ||||||||||||| | | |||| |||| ||||||||| |||||| ||||  ||||||| ||||||||||||| |||  |||||||| |||||| |    
T  8956864 agaggaagtgtgcttgtgtaaggtccacatgaacacgtgtcacatttttatgtgggtgtcaaaggatgtattgccacataaggatgtctatgtatcatta 8956765  T
Q  116 ctct 119  Q
    ||||    
T  8956764 ctct 8956761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 31456791 - 31456712
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccaccta 95  Q
    ||||||||||||||||||| || |||| ||||  ||||||||||||||||||||  ||||||| | ||||||||| ||||    
T  31456791 agagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccgccta 31456712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 33644302 - 33644200
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| || ||||  |||  ||||||||||||||||||||  ||||||| | |||||||||||| ||   ||||||| |||||| |    
T  33644302 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacccaagggtgtctatgtatcatta 33644203  T
Q  116 ctc 118  Q
    |||    
T  33644202 ctc 33644200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 52629402 - 52629304
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcata 114  Q
    ||||||||||||||||| | || ||||  |||  ||||||||||||||||||||  ||||||| | |||||||||||||||   ||||||| |||||||    
T  52629402 agagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcata 52629304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 11907473 - 11907369
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||| ||||||||||| || ||||||||| ||| |||||||||||||||||| |||  |    ||||||| |||||||   ||||||| ||||||||    
T  11907473 agagaaaatgtgcttgtgcggggtccatatgaccacatgtcagatttttgtgtgagtgttcaggtgtgtattgtcacctaagggtgtctatgtatcataa 11907374  T
Q  116 ctctt 120  Q
    |||||    
T  11907373 ctctt 11907369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 25407145 - 25407193
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagattttt 64  Q
    |||||||||||| |||||  |||||||||||||||||||||||||||||    
T  25407145 agagaaagtgtgtttgtgtgggatccatatgatcacgtgtcagattttt 25407193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 24699952 - 24700055
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    |||||||||||| |||| |||| ||||  ||  |||||| ||||||||| ||||  ||||||||| |||||||||| ||||  |||||||| |||||| |    
T  24699952 agagaaagtgtgtttgtacagggtccacgtggccacgtgccagatttttatgtgggtgtcaaaaggtgtattgccaactaaggatgtctatgtatcatta 24700051  T
Q  116 ctct 119  Q
    ||||    
T  24700052 ctct 24700055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 35536728 - 35536625
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    |||| ||||||||||||| | | |||| |||| ||||||||| |||||| ||||  ||||||| | ||||||||||| |||  |||||||| |||||| |    
T  35536728 agaggaagtgtgcttgtgtaaggtccacatgaccacgtgtcacatttttatgtgggtgtcaaatggtgtattgccacataaggatgtctatgtatcatta 35536629  T
Q  116 ctct 119  Q
    ||||    
T  35536628 ctct 35536625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 120
Target Start/End: Original strand, 11095385 - 11095455
Alignment:
Q  50 acgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataactctt 120  Q
    ||||||||||||||||||||  ||||||| | |||||||||||||||   ||||||| |||||| ||||||    
T  11095385 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactctt 11095455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 14623837 - 14623939
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||   | |||| |||| ||| |||||||||||| ||||  ||||||  | |||||||||||||||  |||||||| |||||| |    
T  14623837 agagaaagtgtgcttgtgtgaggtccacatgaacacatgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtctatgtatcatta 14623936  T
Q  116 ctc 118  Q
    |||    
T  14623937 ctc 14623939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 20764913 - 20765015
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||| | || ||||| ||  |||||||||||||||||||||  ||| |||   |||||| ||||||||  |||||||| | ||||||    
T  20764913 agagaaagtgtgcttgtacggggtccatgtggccacgtgtcagatttttgtgtgggtgttaaagagtgtattaccacctaaggatgtctatgtctcataa 20765012  T
Q  116 ctc 118  Q
    |||    
T  20765013 ctc 20765015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 13898053 - 13898150
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcat 113  Q
    ||||||||||||||||||   | |||| |||| |||||||||||||||| ||||  ||||||  | |||||||||||||||  |||| ||| ||||||    
T  13898053 agagaaagtgtgcttgtgtgaggtccacatgaacacgtgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtttatctatcat 13898150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 8076495 - 8076415
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaa 96  Q
    ||||||||||||||||||| || ||||  |||  |||||| |||||||||||||  ||||||| | |||| ||||||||||    
T  8076495 agagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtactgccacctaa 8076415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 9563101 - 9563029
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattg 88  Q
    |||||||||||| ||||||||||||||  |||  ||||||||||||||| | || |||||||| | |||||||    
T  9563101 agagaaagtgtgtttgtgcaggatccacgtgactacgtgtcagatttttatatggatgtcaaaggttgtattg 9563029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 33118849 - 33118953
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    |||||||||||| || ||  |||||||  |||  |||||||| |||||||||||  ||||||| | ||||||| |||||||   ||||||| ||||||||    
T  33118849 agagaaagtgtgtttctgagggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcataa 33118948  T
Q  116 ctctt 120  Q
    |||||    
T  33118949 ctctt 33118953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 120
Target Start/End: Complemental strand, 35093659 - 35093583
Alignment:
Q  44 atgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataactctt 120  Q
    |||| ||| ||||||||||||| ||| |||||||| | ||||||| ||||||||  ||||||| |||| ||||||||    
T  35093659 atgaccacatgtcagatttttgcgtggatgtcaaatgttgtattgtcacctaaagttgtctatgtatcgtaactctt 35093583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 36331327 - 36331407
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaa 96  Q
    ||||||||||| ||||||| || ||||||||  ||| |||||||||||||||||  ||||||  | || ||||||||||||    
T  36331327 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgcattgccacctaa 36331407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 48587089 - 48587169
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaa 96  Q
    ||||||||||| ||||||| |||||||  |||  ||||||||||||||| |||   ||||||| | |||||||||||||||    
T  48587089 agagaaagtgtacttgtgcgggatccacgtgactacgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaa 48587169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 121
Target Start/End: Original strand, 36707456 - 36707527
Alignment:
Q  50 acgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataactcttt 121  Q
    |||||||||||||||||||| |||||||| | ||||||| |||||||   | ||||| |||||| |||||||    
T  36707456 acgtgtcagatttttgtgtggatgtcaaagggtgtattgtcacctaagggtatctatgtatcattactcttt 36707527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 106
Target Start/End: Original strand, 32605956 - 32606002
Alignment:
Q  60 tttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctat 106  Q
    |||||||||||||||||||  |||||||||||||||| | |||||||    
T  32605956 tttttgtgtgaatgtcaaagaatgtattgccacctaagattgtctat 32606002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 45058551 - 45058652
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||| | ||||||| || |||||||| |||| |||||||||||| ||||  |||| || | |||||||||||||||   ||| ||| ||||||||    
T  45058551 agagaaagtatacttgtgcggggtccatatggtcacatgtcagatttttatgtgggtgtc-aagggtgtattgccacctaagggtgtttatgtatcataa 45058649  T
Q  116 ctc 118  Q
    |||    
T  45058650 ctc 45058652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 42257295 - 42257188
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| || ||||| ||  |||||||||||||||| ||||  ||||||| |||||||||||||||||| |||||||| ||||||||    
T  42257295 agagaaagtgtgcttgtgcggggtccatgtggccacgtgtcagatttttatgtgggtgtcaaatgatgtattgccacctaaagatgtctatgtatcataa 42257196  T
Q  116 ctctttta 123  Q
    ||||||||    
T  42257195 ctctttta 42257188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 40613900 - 40614002
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| || ||||| ||  |||||||||||||||||||||  ||||||| | |||||||||||||||  |||||||| ||||||||    
T  40613900 agagaaagtgtgcttgtgcggggtccatgtggccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataa 40613999  T
Q  116 ctc 118  Q
    |||    
T  40614000 ctc 40614002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 9058582 - 9058478
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| || |||| ||||  ||||||||||||||||||||  ||||||| | |||||||||||||||   ||||||| |||||| |    
T  9058582 agagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 9058483  T
Q  116 ctctt 120  Q
    |||||    
T  9058482 ctctt 9058478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 38273140 - 38273248
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    |||||||||||||| |||| || ||||| ||   ||||||||||||||||||||  ||| ||| | |||||||||| |||| ||||||||| ||||||||    
T  38273140 agagaaagtgtgctagtgcggggtccatgtggctacgtgtcagatttttgtgtgggtgttaaagggtgtattgccatctaagaatgtctatgtatcataa 38273239  T
Q  116 ctcttttaa 124  Q
    |||||||||    
T  38273240 ctcttttaa 38273248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 5574486 - 5574589
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| |||||||  |||  ||||||||||||||| ||||  ||||||| | ||||||||||||||| | ||||||| |||||| |    
T  5574486 agagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcatta 5574585  T
Q  116 ctct 119  Q
    ||||    
T  5574586 ctct 5574589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 33436313 - 33436210
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||||   |||| ||| ||||||||||||||||| ||||  ||||||||| |||||||||| ||||  |||||||| |||||| |    
T  33436313 agagaaagtgtgcttgtgcaaagtccacatggtcacgtgtcagatttttatgtgggtgtcaaaaggtgtattgccatctaaggatgtctatgtatcatta 33436214  T
Q  116 ctct 119  Q
    ||||    
T  33436213 ctct 33436210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 45097733 - 45097839
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||| ||||||| || ||||||||  ||| |||||||||||||| ||  ||||||  |||||||||||||||||  |||| ||| ||||||||    
T  45097733 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtatgggtgtcaagggatgtattgccacctaaggatgtttatgtatcataa 45097832  T
Q  116 ctctttt 122  Q
    |||||||    
T  45097833 ctctttt 45097839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 19930818 - 19930915
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcat 113  Q
    |||||||||||| |||||| || |||| ||||  |||||||||||||||||||| |||||||| | |||||||||||||||   ||||||| ||||||    
T  19930818 agagaaagtgtgtttgtgcggggtccacatgactacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtgtctatgtatcat 19930915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 10249380 - 10249484
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| || ||||  |||  ||||||||||||||||||||  ||||||||| ||||||| |||||||   ||||||| |||||| |    
T  10249380 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcatta 10249479  T
Q  116 ctctt 120  Q
    |||||    
T  10249480 ctctt 10249484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 33436098 - 33436205
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| || ||||  |||  |||||| |||||||||||||  ||||||| | |||||||||||||||   ||||||| |||||| |    
T  33436098 agagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 33436197  T
Q  116 ctctttta 123  Q
    ||||||||    
T  33436198 ctctttta 33436205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 13438445 - 13438343
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| || ||||  |||  ||||||||||||||||||||  ||||||| ||||||||| |||||||   ||||||| |||||| |    
T  13438445 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgtcacctaagggtgtctatgtatcatta 13438346  T
Q  116 ctc 118  Q
    |||    
T  13438345 ctc 13438343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 17473122 - 17473020
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| |||||||  |||  ||||||||||||||||||||  ||||||| | |||||||||| ||||   ||||||| |||||| |    
T  17473122 agagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcatta 17473023  T
Q  116 ctc 118  Q
    |||    
T  17473022 ctc 17473020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 27864806 - 27864704
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||| ||| || ||||  |||| |||||||||||||||||||| |||||||| | ||||||||||| |||   ||||||| |||||| |    
T  27864806 agagaaagtgtgcttttgcggggtccacgtgattacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacataagggtgtctatgtatcatta 27864707  T
Q  116 ctc 118  Q
    |||    
T  27864706 ctc 27864704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 28381653 - 28381755
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| |  ||||| |||  ||||||||||||||||||||  |||| |||| |||||||||||||||   ||||||| |||||| |    
T  28381653 agagaaagtgtgcttgtgcggagtccatgtgactacgtgtcagatttttgtgtgggtgtcgaaaggtgtattgccacctaagggtgtctatgtatcatta 28381752  T
Q  116 ctc 118  Q
    |||    
T  28381753 ctc 28381755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 28863557 - 28863460
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcat 113  Q
    ||||||||||||||||||| || ||||  |||  ||||||||||||||||||||  ||||||| | |||||||||||||||   ||||||| ||||||    
T  28863557 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 28863460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 32505648 - 32505749
Alignment:
Q  18 agaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataact 117  Q
    ||||||||||||||||| || ||||  |||  ||||||||||||||||||||  ||||||||| ||||||| |||||||   ||||||| |||||| |||    
T  32505648 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattact 32505747  T
Q  118 ct 119  Q
    ||    
T  32505748 ct 32505749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 4060785 - 4060685
Alignment:
Q  18 agaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataact 117  Q
    ||||||||||||| ||| |||||||  | |  |||||||||||||||||||| |||||||||| ||||||| |||||||   ||||||| |||||| |||    
T  4060785 agaaagtgtgcttatgcgggatccacgtaactacgtgtcagatttttgtgtggatgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattact 4060686  T
Q  118 c 118  Q
    |    
T  4060685 c 4060685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 2533221 - 2533123
Alignment:
Q  20 aaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataactct 119  Q
    ||||||||||||||| || || || ||   ||||||||||||||||||||  ||||||| ||||||||||||| |||  |||||||| ||||||||||||    
T  2533221 aaagtgtgcttgtgcggggtctatgtggctacgtgtcagatttttgtgtgg-tgtcaaaggatgtattgccacttaaggatgtctatgtatcataactct 2533123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 38732456 - 38732354
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||| ||||||| || ||||||||| ||| |||||||||||||||||  ||||||  ||||||||| ||| |||   ||| ||| ||||||||    
T  38732456 agagaaagtgtacttgtgcggggtccatatgaccacatgtcagatttttgtgtgggtgtcaagggatgtattgtcacataagggtgtttatgtatcataa 38732357  T
Q  116 ctc 118  Q
    |||    
T  38732356 ctc 38732354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 40701580 - 40701478
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    |||||||||||| |||||| || ||||  | |  ||||||||||||||||||||  ||||||||| |||||||||||||||   ||||||| |||||| |    
T  40701580 agagaaagtgtgattgtgcggggtccacgtaactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcatta 40701481  T
Q  116 ctc 118  Q
    |||    
T  40701480 ctc 40701478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 41575240 - 41575142
Alignment:
Q  16 agagaaagtgtgcttgtgcagga-tccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcat 113  Q
    |||||||||||||||||| |||  |||| |||| ||| ||||| |||||||||||||||||||| | |||||| ||| ||||  |||||||| ||||||    
T  41575240 agagaaagtgtgcttgtgtaggggtccacatgaccacatgtcaaatttttgtgtgaatgtcaaagggtgtattaccatctaaggatgtctatgtatcat 41575142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 2997485 - 2997565
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaa 96  Q
    ||||||||||| ||||||| || ||||||||  ||| |||||||||||||||||  ||||||  | |||||||||||||||    
T  2997485 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaa 2997565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 7465733 - 7465836
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||  || ||||  |||  ||||||||||||||||||||  ||||||| | |||||||||| ||||   ||||||| |||||| |    
T  7465733 agagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcatta 7465832  T
Q  116 ctct 119  Q
    ||||    
T  7465833 ctct 7465836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 20700917 - 20700810
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||| ||| || ||||  |||  |||||||||||||||||||    |||||| | ||||||||||| |||  |||||||| |||||| |    
T  20700917 agagaaagtgtgcttatgcggggtccacgtgactacgtgtcagatttttgtgtaggagtcaaagggtgtattgccacataaggatgtctatgtatcatta 20700818  T
Q  116 ctctttta 123  Q
    ||||||||    
T  20700817 ctctttta 20700810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 36168938 - 36168835
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||| ||||||||| || ||||| ||  ||||||||| |||||||||||   || ||| ||||||||| || ||||  |||||||| ||||||||    
T  36168938 agagaaagtatgcttgtgcggggtccatgtggccacgtgtcaaatttttgtgtgggagttaaaggatgtattgtcatctaaggatgtctatgtatcataa 36168839  T
Q  116 ctct 119  Q
    ||||    
T  36168838 ctct 36168835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 13365455 - 13365402
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtg 69  Q
    ||||||||||| ||||||| || |||||||| |||| |||||||||||||||||    
T  13365455 agagaaagtgtacttgtgcggggtccatatggtcacatgtcagatttttgtgtg 13365402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 30915565 - 30915461
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||| | || ||||  |||  ||||||||||||||| ||||   |||||| | |||||||||||||||   ||||||| |||||| |    
T  30915565 agagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttatgtgggggtcaaagggtgtattgccacctaagggtgtctatgtatcatta 30915466  T
Q  116 ctctt 120  Q
    |||||    
T  30915465 ctctt 30915461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 121
Target Start/End: Original strand, 38882846 - 38882916
Alignment:
Q  50 acgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataactcttt 121  Q
    |||||||||||||||||||| |||||||| | | |||||||||||||   ||||||| |||||| |||||||    
T  38882846 acgtgtcagatttttgtgtggatgtcaaagggt-tattgccacctaagggtgtctatgtatcattactcttt 38882916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 43490219 - 43490121
Alignment:
Q  20 aaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataactc 118  Q
    ||||||| ||||||| || ||||||||  ||| |||||||||||||||||  ||||||  | ||||||| |||||||   ||| ||| |||||||||||    
T  43490219 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgtcacctaagggtgtttatgtatcataactc 43490121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 118
Target Start/End: Original strand, 17820039 - 17820104
Alignment:
Q  53 tgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataactc 118  Q
    |||||||||||||||||  ||||||  | |||||||||||||| |  ||||||| |||||||||||    
T  17820039 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctatagttgtctatgtatcataactc 17820104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 3034981 - 3035033
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgt 68  Q
    ||||||||| | ||||||| || ||||||||| ||| ||||||||||||||||    
T  3034981 agagaaagtatacttgtgcggggtccatatgaccacatgtcagatttttgtgt 3035033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 3154245 - 3154193
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgt 68  Q
    ||||||| |||| ||| || |||||||| ||| ||||||||||||||||||||    
T  3154245 agagaaactgtgtttgggcgggatccatgtgaccacgtgtcagatttttgtgt 3154193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 6679800 - 6679697
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||| |||| |||||| || ||||| ||| |||||||||||||||||||||  ||||||||| |||||||||||||||| |||||||| ||||||||    
T  6679800 agagaaaatgtgtttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaagatgtctatgtatcataa 6679701  T
Q  116 ctct 119  Q
    ||||    
T  6679700 ctct 6679697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 28177877 - 28177775
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    |||||||||||| |||||| || ||||| ||| |||||||||||||||||||||  ||||||| | |||||||||||||||  |||||||| ||||||||    
T  28177877 agagaaagtgtgtttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataa 28177778  T
Q  116 ctc 118  Q
    |||    
T  28177777 ctc 28177775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 2740376 - 2740273
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| |||||||  |||  ||||||||||||||||||||  ||||||| | |||||||||||||||  |||||||| |||||| |    
T  2740376 agagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcatta 2740277  T
Q  116 ctct 119  Q
    ||||    
T  2740276 ctct 2740273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 13811754 - 13811648
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| || ||||  |||  ||||||||||||||||||||  ||||||| |||||||||||||||||   ||||||| |||| | |    
T  13811754 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatgatgtattgccacctaagggtgtctatgtatcttta 13811655  T
Q  116 ctctttt 122  Q
    |||||||    
T  13811654 ctctttt 13811648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 26720618 - 26720516
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| |||||||| ||  |||||||||||||||| |||   ||| ||| | |||||||||||||||  |||||||| ||||||||    
T  26720618 agagaaagtgtgcttgtgcgggatccatgtggccacgtgtcagatttttttgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcataa 26720519  T
Q  116 ctc 118  Q
    |||    
T  26720518 ctc 26720516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 26990367 - 26990265
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| |||||||| ||  |||||||||||||||| |||   ||| ||| | |||||||||||||||  |||||||| ||||||||    
T  26990367 agagaaagtgtgcttgtgcgggatccatgtggccacgtgtcagatttttttgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcataa 26990268  T
Q  116 ctc 118  Q
    |||    
T  26990267 ctc 26990265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 35943890 - 35943992
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||  |||||||  | |  ||||||||||||||||||||  ||||||| |||||||||||||||||   ||||||| ||||||||    
T  35943890 agagaaagtgtgcttgtgtgggatccacgtaactacgtgtcagatttttgtgtgggtgtcaaatgatgtattgccacctaagggtgtctatgtatcataa 35943989  T
Q  116 ctc 118  Q
    |||    
T  35943990 ctc 35943992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 14831914 - 14831814
Alignment:
Q  18 agaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataact 117  Q
    ||||||||||||||||| |||||||  |||  ||||||||||||||| ||||  ||||||| | ||||||||||||||| | ||||||| |||||| |||    
T  14831914 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattact 14831815  T
Q  118 c 118  Q
    |    
T  14831814 c 14831814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 15409608 - 15409712
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||| ||||||||||||| || ||||| ||   ||||||||||||||||||||  |||||||  |||||||| |||||||  |||||||| ||||||||    
T  15409608 agagagagtgtgcttgtgcggggtccatgtggctacgtgtcagatttttgtgtgggtgtcaaagaatgtattgtcacctaaggatgtctatgtatcataa 15409707  T
Q  116 ctctt 120  Q
    |||||    
T  15409708 ctctt 15409712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 2252166 - 2252269
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||| ||||||| || ||||||||  ||| |||||||||||||||||  ||||||  | |||||||||||||||  |||| ||| ||||||||    
T  2252166 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaaggatgtttatgtatcataa 2252265  T
Q  116 ctct 119  Q
    ||||    
T  2252266 ctct 2252269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 18520882 - 18520988
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| || ||||  |||  ||||||||||||||||||||  ||||||| | |||||||||||||||   ||||||| |||||| |    
T  18520882 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 18520981  T
Q  116 ctctttt 122  Q
     ||||||    
T  18520982 ttctttt 18520988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 35785301 - 35785199
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    |||||||||||| |||||| |||||||  | |  ||||||||||||||||||||  ||||||||| |||||||||||||||   ||||||| |||||| |    
T  35785301 agagaaagtgtgattgtgcgggatccacgtaactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcatta 35785202  T
Q  116 ctc 118  Q
    |||    
T  35785201 ctc 35785199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 40145509 - 40145407
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| || ||||  |||  |||||||||||||||||||| |||| ||| | |||||||||||||||   ||||||| |||||| |    
T  40145509 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgttaaagggtgtattgccacctaagggtgtctatgtatcatta 40145410  T
Q  116 ctc 118  Q
    |||    
T  40145409 ctc 40145407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 3921263 - 3921368
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||| ||||||| || ||||||||  ||| |||||||||||||||||  ||||||  | |||||||||||||||   ||| ||| ||||||||    
T  3921263 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 3921362  T
Q  116 ctcttt 121  Q
    ||||||    
T  3921363 ctcttt 3921368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 31009088 - 31008984
Alignment:
Q  18 agaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataact 117  Q
    ||||||||||||||||| |||||||  |||  ||||||||||||||||||||  |||  ||  |||||||| |||||||  |||| ||| ||||||||||    
T  31009088 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtggaagaatgtattgtcacctaaggatgtttatgtatcataact 31008989  T
Q  118 ctttt 122  Q
    |||||    
T  31008988 ctttt 31008984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 42414304 - 42414379
Alignment:
Q  20 aaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccaccta 95  Q
    ||||||||||||||| || |||| ||||  ||||||||||||||||||||  ||||||| | ||||||||||||||    
T  42414304 aaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccaccta 42414379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 33149636 - 33149738
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| |||||||  |||  |||||||| |||||||||||  ||||||| | |||||| ||||||||   ||||||| |||||| |    
T  33149636 agagaaagtgtgcttgtgcgggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcatta 33149735  T
Q  116 ctc 118  Q
    |||    
T  33149736 ctc 33149738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 20073516 - 20073616
Alignment:
Q  18 agaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataact 117  Q
    |||||||||||||||||||| ||||  || |||||||  |||||||| ||||| ||||||| | ||||||| || ||||  |||||||| |||||| |||    
T  20073516 agaaagtgtgcttgtgcagggtccacgtggtcacgtgcaagatttttatgtgagtgtcaaagggtgtattgtcatctaatgatgtctatatatcattact 20073615  T
Q  118 c 118  Q
    |    
T  20073616 c 20073616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 36732940 - 36733044
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| || ||||  |||  | ||||||||||||||||||  ||||||| | |||||||| ||||||   ||||||| |||||| |    
T  36732940 agagaaagtgtgcttgtgcggggtccacgtgactatgtgtcagatttttgtgtgggtgtcaaagggtgtattgctacctaagggtgtctatgtatcatta 36733039  T
Q  116 ctctt 120  Q
    |||||    
T  36733040 ctctt 36733044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 39557515 - 39557594
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccaccta 95  Q
    |||||||||||| ||||   || ||||| ||||||||||||||||||||||||| |||| || || |||||| |||||||    
T  39557515 agagaaagtgtgattgtatggggtccatgtgatcacgtgtcagatttttgtgtggatgttaagaggtgtattaccaccta 39557594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 33825322 - 33825412
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctat 106  Q
    |||||||||||||||||| | | | || |||| |||||||||||||||| ||||  ||||||    ||||||||||||||| |||||||||    
T  33825322 agagaaagtgtgcttgtgtaaggttcacatgaacacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagaatgtctat 33825412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 39688895 - 39688999
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||| ||| ||| || | ||||||| ||| | |||||||||||||||  ||||||  ||||||||||||| |||   ||| ||| ||||||||    
T  39688895 agagaaagtgtacttatgcggggttcatatgaccacatatcagatttttgtgtgggtgtcaagggatgtattgccacttaagggtgtttatgtatcataa 39688994  T
Q  116 ctctt 120  Q
    |||||    
T  39688995 ctctt 39688999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 41470448 - 41470517
Alignment:
Q  50 acgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataactct 119  Q
    ||||||||||||||| | ||||| | ||| ||||||||||||||||||  ||||||| ||| || |||||    
T  41470448 acgtgtcagatttttatatgaattttaaaggatgtattgccacctaaaggtgtctatgtattattactct 41470517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 16327975 - 16327923
Alignment:
Q  44 atgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaa 96  Q
    |||| |||||||||||||||| ||||  ||||||  |||||||||||||||||    
T  16327975 atgaacacgtgtcagatttttatgtgggtgtcaatggatgtattgccacctaa 16327923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 32813349 - 32813244
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| || ||||| ||| |||||||||||||||||||||  ||| ||| | |||||||||||||||  |||||||| ||||||||    
T  32813349 agagaaagtgtgcttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataa 32813250  T
Q  116 ctcttt 121  Q
    ||||||    
T  32813249 ctcttt 32813244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 27564733 - 27564835
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| || ||||  |||| ||||||||||||||||||||  ||||||||| |||||||||||||||  |||||||| |||||| |    
T  27564733 agagaaagtgtgcttgtgcggggtccacgtgattacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcatta 27564832  T
Q  116 ctc 118  Q
    |||    
T  27564833 ctc 27564835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 51898683 - 51898784
Alignment:
Q  18 agaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataact 117  Q
    ||||||||||||||||| |||||||  |||  ||||||||||||||||||||  ||||||| | |||||||||||||||| |||||||| |||||| |||    
T  51898683 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattact 51898782  T
Q  118 ct 119  Q
    ||    
T  51898783 ct 51898784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 37926436 - 37926539
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||| ||||| | |||||||| ||  |||||||||||||||| ||||  ||| |||||||||||||||||||||| || ||||| ||||||||    
T  37926436 agagaaagtgtacttgtacgggatccatgtggccacgtgtcagatttttatgtgggtgttaaaagatgtattgccacctaaagatatctatgtatcataa 37926535  T
Q  116 ctct 119  Q
    ||||    
T  37926536 ctct 37926539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 8346386 - 8346492
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    |||||||||||||||||||||| ||||  |||  ||||||||||||||||||||  ||||||| | ||||||||||||||||  || |||| |||||| |    
T  8346386 agagaaagtgtgcttgtgcagggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaaggtgactatgtatcatta 8346485  T
Q  116 ctctttt 122  Q
    |||||||    
T  8346486 ctctttt 8346492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 49811525 - 49811629
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| |  || |||||   |||||||||||||||||||| |||||||| | ||||||| |||||||  |||||||| ||||||||    
T  49811525 agagaaagtgtgcttgtgcggagtctatatggctacgtgtcagatttttgtgtggatgtcaaatggtgtattgtcacctaaggatgtctatctatcataa 49811624  T
Q  116 ctctt 120  Q
    |||||    
T  49811625 ctctt 49811629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 5958998 - 5959104
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||| ||||||| || ||||||||| ||| |||||||||||||||||  |||||| || ||||||||||| |||   ||| ||| ||||||||    
T  5958998 agagaaagtgtacttgtgcggggtccatatgaccacatgtcagatttttgtgtgggtgtcaagaggtgtattgccacttaagggtgtttatgtatcataa 5959097  T
Q  116 ctctttt 122  Q
    |||||||    
T  5959098 ctctttt 5959104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 44548374 - 44548471
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcat 113  Q
    ||||||||||||||||||| || ||||  |||  ||||||||||||||||||||  | ||||| | |||||||||||||||| |||||||| ||||||    
T  44548374 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtatcaaatggtgtattgccacctaaagatgtctatgtatcat 44548471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 37649297 - 37649193
Alignment:
Q  19 gaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataactc 118  Q
    |||||||||||||||| | || ||  ||| |||||||||||||||||||||  |||||||   |||||||||||||||| |||||||| |||||| ||||    
T  37649297 gaaagtgtgcttgtgcggaattcacgtgaccacgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaaagatgtctatgtatcattactc 37649198  T
Q  119 tttta 123  Q
     ||||    
T  37649197 attta 37649193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 38632323 - 38632423
Alignment:
Q  20 aaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataactct 119  Q
    ||||||||||||||| || ||||  |||  |||||||||||||||||||| |||| ||||| |||||||||||||||   ||||||| |||||| |||||    
T  38632323 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgttaaaaggtgtattgccacctaagggtgtctatgtatcattactct 38632422  T
Q  120 t 120  Q
    |    
T  38632423 t 38632423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 2582015 - 2581912
Alignment:
Q  18 agaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataact 117  Q
    ||||||||||||||||| || ||||  |||  ||||||||||||||||||||  ||||||| | |||||||||||||||   ||||||| |||||| |||    
T  2582015 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattact 2581916  T
Q  118 cttt 121  Q
    ||||    
T  2581915 cttt 2581912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 38595256 - 38595150
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||| | || ||||  |||  ||||||||||||||||||||  ||||||| | ||||||||||||||||  ||| ||| |||||| |    
T  38595256 agagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaaggtgtttatgtatcatta 38595157  T
Q  116 ctctttt 122  Q
    |||||||    
T  38595156 ctctttt 38595150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 41608491 - 41608593
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||| ||||| | || ||||||||  ||| |||||||||||||||||| ||||||  | |||||||||||||||  |||| ||| ||||||||    
T  41608491 agagaaagtgtacttgtacggggtccatatggccacatgtcagatttttgtgtgagtgtcaaggggtgtattgccacctaaggatgtttatgtatcataa 41608590  T
Q  116 ctc 118  Q
    |||    
T  41608591 ctc 41608593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 48716284 - 48716382
Alignment:
Q  20 aaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataactc 118  Q
    ||||||||||||||| || ||||  |||  |||||||||||||||||||| |||||||| | |||||||||||||||   ||||||| |||||| ||||    
T  48716284 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgtcaaatggtgtattgccacctaagggtgtctatgtatcattactc 48716382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 124
Target Start/End: Complemental strand, 26440836 - 26440728
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||| ||| |||||||| ||  |||||||||||||||||||||  ||| ||| | ||||||| || ||||  |||||||| |||| |||    
T  26440836 agagaaagtgtgcttatgcgggatccatgtggccacgtgtcagatttttgtgtgggtgttaaagggtgtattgtcatctaaggatgtctatctatcctaa 26440737  T
Q  116 ctcttttaa 124  Q
    ||| |||||    
T  26440736 ctcatttaa 26440728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 43234 - 43132
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| |  ||||  |||  ||||||||||||||||||||  ||||||| ||||||||| | ||||| | ||||||| |||||| |    
T  43234 agagaaagtgtgcttgtgcggagtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgtctcctaagactgtctatgtatcatta 43135  T
Q  116 ctc 118  Q
    |||    
T  43134 ctc 43132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 9474874 - 9474976
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    |||||||||||| |||||| || ||||  |||  ||||||||||||||||||||  ||||||| | |||||||||||||||   ||||||| |||||| |    
T  9474874 agagaaagtgtgtttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 9474973  T
Q  116 ctc 118  Q
    |||    
T  9474974 ctc 9474976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 47452318 - 47452420
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| |||||||  |||  |||||| |||||||||||||  ||||||| | |||||| ||||||||   ||||||| |||||| |    
T  47452318 agagaaagtgtgcttgtgcgggatccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcatta 47452417  T
Q  116 ctc 118  Q
    |||    
T  47452418 ctc 47452420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 50590998 - 50591100
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||| ||||||| || ||||||||  ||| |||||||||||||||||  ||||||  | |||||||||||||||   ||| ||| ||||||||    
T  50590998 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 50591097  T
Q  116 ctc 118  Q
    |||    
T  50591098 ctc 50591100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 26274530 - 26274437
Alignment:
Q  20 aaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcat 113  Q
    ||||||| |||||||||||||||  |||  | ||||||||||||| |||| |||||||| ||||||||||||| |||   ||||||| ||||||    
T  26274530 aaagtgtacttgtgcaggatccacgtgactatgtgtcagatttttctgtggatgtcaaatgatgtattgccacataagggtgtctatgtatcat 26274437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 44454077 - 44453980
Alignment:
Q  20 aaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataact 117  Q
    ||||||||||||||  |||||||  | | ||| |||||||||||||||||  | |||| |||||||||||||| ||||  ||||||| ||||||||||    
T  44454077 aaagtgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtgtgggtatcaagagatgtattgccacttaaaggtgtctatgtatcataact 44453980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 3000421 - 3000341
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaa 96  Q
    ||||||||||||||||| | || ||||  |||  ||||||||||||||||||||  ||||||| | |||||||||||||||    
T  3000421 agagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaa 3000341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 50630560 - 50630480
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaa 96  Q
    ||||||||||||||||||| || ||||  |||  ||||||||||||||||||||  |  |||| |||||||||||||||||    
T  50630560 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtaacaaaggatgtattgccacctaa 50630480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 41758907 - 41758832
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgcca 91  Q
    |||||||||||| |||||| || ||||| |||  ||||||||||||||||||||  ||||||| | ||||||||||    
T  41758907 agagaaagtgtgtttgtgcggggtccatgtgactacgtgtcagatttttgtgtggttgtcaaagggtgtattgcca 41758832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 11152378 - 11152456
Alignment:
Q  18 agaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaa 96  Q
    |||||| |||||||||| || || | ||||  |||||||||||||||||||| ||||| || | |||||||||||||||    
T  11152378 agaaagcgtgcttgtgcggggtctacatgactacgtgtcagatttttgtgtggatgtcgaagggtgtattgccacctaa 11152456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 3302533 - 3302584
Alignment:
Q  18 agaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtg 69  Q
    |||||||||||||||   || |||||||||| ||||||||||||||||||||    
T  3302533 agaaagtgtgcttgtatggggtccatatgattacgtgtcagatttttgtgtg 3302584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 48489400 - 48489343
Alignment:
Q  18 agaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtc 75  Q
    ||||| ||||||||||| |||||||  ||| ||| ||||||||||||||||| |||||    
T  48489400 agaaaatgtgcttgtgcgggatccacgtgaccacatgtcagatttttgtgtggatgtc 48489343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 121
Target Start/End: Original strand, 23597122 - 23597194
Alignment:
Q  49 cacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataactcttt 121  Q
    |||||||||||||||| ||||  | |||||   |||||||||||||||  |||||||| |||||| |||||||    
T  23597122 cacgtgtcagatttttatgtgggtatcaaagagtgtattgccacctaatgatgtctatgtatcattactcttt 23597194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 19329944 - 19329842
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| || ||||  |||| ||||||||||||||||||||  ||||||||| |||||||||||||||  |||||||| |||||| |    
T  19329944 agagaaagtgtgcttgtgcggggtccacgtgattacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcatta 19329845  T
Q  116 ctc 118  Q
    |||    
T  19329844 ctc 19329842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 3784097 - 3784000
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcat 113  Q
    ||||||||||||||||||| |||||||  |||  ||||||||||||||||||||  |||||||||||||||||||||||||   ||||||| ||||||    
T  3784097 agagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgtatcat 3784000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 35522978 - 35522877
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| |||||||||||  |||||||||||||||||||||  ||| ||| | ||||||||||| |||  |||||||| ||||||||    
T  35522978 agagaaagtgtgcttgtgcgggatccatatggccacgtgtcagatttttgtgtgggtgttaaatggtgtattgccacttaaggatgtctatgtatcataa 35522879  T
Q  116 ct 117  Q
    ||    
T  35522878 ct 35522877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 7728006 - 7727902
Alignment:
Q  18 agaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataact 117  Q
    ||||||||| ||||||| || ||||||||| ||| |||||||||||| |||||||||||| || |||||| ||||||||   ||| ||| ||||||||||    
T  7728006 agaaagtgtacttgtgcggggtccatatgaccacatgtcagatttttatgtgaatgtcaagaggtgtattaccacctaagggtgtttatgtatcataact 7727907  T
Q  118 ctttt 122  Q
    |||||    
T  7727906 ctttt 7727902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 19436185 - 19436289
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||| ||| |||||||  |||  ||||||||||||||||||||  ||||||||| ||||||| |||||||  |||||||| |||||| |    
T  19436185 agagaaagtgtgcttatgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaaggatgtctatgtatcatta 19436284  T
Q  116 ctctt 120  Q
    |||||    
T  19436285 ctctt 19436289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 3434664 - 3434561
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| |||||||  |||  ||||||||| ||||||||||  ||||||| | |||||||||||||||  |||||||| |||||| |    
T  3434664 agagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagttttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcatta 3434565  T
Q  116 ctct 119  Q
    ||||    
T  3434564 ctct 3434561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 3694469 - 3694389
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaa 96  Q
    ||||||||||||||||||| ||||||| ||||  ||||||||||||||||||||  ||| ||||| ||||||| |||||||    
T  3694469 agagaaagtgtgcttgtgcgggatccacatgactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgtcacctaa 3694389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 22343463 - 22343360
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||| ||||||| || |||||||| |||| |||||||||||||||||  ||||||  | |||||||||||||||   ||| ||| ||||||||    
T  22343463 agagaaagtgtacttgtgcggggtccatatggtcacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 22343364  T
Q  116 ctct 119  Q
    ||||    
T  22343363 ctct 22343360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 36361911 - 36362014
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||  || ||||  |||  ||||||||||||||||||||  ||||||| |||||||||||||||||   ||||||| |||||| |    
T  36361911 agagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgccacctaagggtgtctatgtatcatta 36362010  T
Q  116 ctct 119  Q
    ||||    
T  36362011 ctct 36362014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 35468853 - 35468959
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    |||||||||||| ||||||||| |||| ||| |||| | | |||||||| ||||  ||||||| |||||||||||| ||||  |||||||| |||||| |    
T  35468853 agagaaagtgtgtttgtgcagggtccacatggtcacatattagatttttatgtgggtgtcaaatgatgtattgccatctaaggatgtctatgtatcatta 35468952  T
Q  116 ctctttt 122  Q
    |||||||    
T  35468953 ctctttt 35468959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 40957809 - 40957704
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||| | |||||||  |||  ||||||||||||||||||||  | |||||   ||||||||||||||| | ||||||| |||||| |    
T  40957809 agagaaagtgtgcttgtacgggatccacgtgactacgtgtcagatttttgtgtgggtatcaaagagtgtattgccacctaagagtgtctatgtatcatta 40957710  T
Q  116 ctcttt 121  Q
    ||||||    
T  40957709 ctcttt 40957704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 7389491 - 7389387
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| || ||||  |||  ||||||||||||||||||||  |||||||   |||||||||||||||   ||||||| |||||| |    
T  7389491 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaagggtgtctatgtatcatta 7389392  T
Q  116 ctctt 120  Q
    |||||    
T  7389391 ctctt 7389387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 38044299 - 38044195
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||| ||||||| || ||||||||   || ||||||||||||||||| |||||||  | |||||||||||||||   ||| ||| ||||||||    
T  38044299 agagaaagtgtacttgtgcggggtccatatggctacatgtcagatttttgtgtggatgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 38044200  T
Q  116 ctctt 120  Q
    |||||    
T  38044199 ctctt 38044195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 8238315 - 8238236
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccaccta 95  Q
    ||||||||||| ||||||| || |||||||||  || |||||||||||||||||  ||||||| | ||||||||||||||    
T  8238315 agagaaagtgtacttgtgcggggtccatatgactacatgtcagatttttgtgtgggtgtcaaagggtgtattgccaccta 8238236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 36362128 - 36362025
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||  || ||||  |||  ||||||||||||||||||||  ||||||| |||||||| ||||||||   ||||||| |||||| |    
T  36362128 agagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattaccacctaagggtgtctatgtatcatta 36362029  T
Q  116 ctct 119  Q
    ||||    
T  36362028 ctct 36362025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 41915843 - 41915732
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||| ||||||| || ||||||||  ||| ||||||||||||||||   ||||||  | |||||||||||||||   ||| ||| ||||||||    
T  41915843 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtaggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 41915744  T
Q  116 ctcttttaaaaa 127  Q
    |||| |||||||    
T  41915743 ctctattaaaaa 41915732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 21234503 - 21234401
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||| ||||||||||| || | ||| ||   |||||||| |||||||||||| ||||||| | ||||||| |||||||  |||||||| ||||||||    
T  21234503 agagaaaatgtgcttgtgcggggtacatgtggctacgtgtcaaatttttgtgtgagtgtcaaagggtgtattgtcacctaaggatgtctatgtatcataa 21234404  T
Q  116 ctc 118  Q
    |||    
T  21234403 ctc 21234401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 32564424 - 32564526
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    |||||||||||  |||||| || |||||||   ||| |||||||||||||||||  ||||||  | ||||||||||||||| ||||| ||| ||||||||    
T  32564424 agagaaagtgtatttgtgcggggtccatatagccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagaatgtttatgtatcataa 32564523  T
Q  116 ctc 118  Q
    |||    
T  32564524 ctc 32564526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 35137635 - 35137533
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    |||||||||||| |||||| || ||||  |||  |||||| |||||||||||||  ||||||| | |||||||||||||||   |||||||||||||| |    
T  35137635 agagaaagtgtgtttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatttatcatta 35137536  T
Q  116 ctc 118  Q
    |||    
T  35137535 ctc 35137533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 24 - 118
Target Start/End: Original strand, 46374808 - 46374902
Alignment:
Q  24 tgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataactc 118  Q
    ||||||||||| || ||||| ||  |||||||||||||||||||||  ||| ||| | ||| |||||||||||  |||||||| |||||||||||    
T  46374808 tgtgcttgtgcggggtccatgtggccacgtgtcagatttttgtgtgggtgttaaagggtgtgttgccacctaaggatgtctatgtatcataactc 46374902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 32951491 - 32951588
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcat 113  Q
    ||||||||||||||||||| || ||||  |||  |||||| ||||||||||||| |||| ||| ||||||||| || |||| | ||||||| ||||||    
T  32951491 agagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtggatgttaaaggatgtattgtcatctaagagtgtctatgtatcat 32951588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 8080381 - 8080485
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| || ||||  |||  ||||||||||||||| |||   ||||||| | |||||||||||||||   ||||||| |||||| |    
T  8080381 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 8080480  T
Q  116 ctctt 120  Q
    |||||    
T  8080481 ctctt 8080485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 36208275 - 36208171
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||| |||||||||||||| ||||  ||| ||| |||||| ||||||||||  ||||||   ||||||| ||||||||   ||||||| ||||||||    
T  36208275 agagaaaatgtgcttgtgcagggtccacgtgaccacatgtcagctttttgtgtgggtgtcaatgaatgtattaccacctaagggtgtctatgtatcataa 36208176  T
Q  116 ctctt 120  Q
    |||||    
T  36208175 ctctt 36208171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 26296746 - 26296643
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||| || |||||||| || ||||||||  ||||| |||||||||| |||| |||| ||| | | ||||| |||||||  |||||||| ||||||||    
T  26296746 agagaaaatgcgcttgtgcggggtccatatggccacgtatcagatttttatgtggatgttaaagggtatattgtcacctaaggatgtctatgtatcataa 26296647  T
Q  116 ctct 119  Q
    ||||    
T  26296646 ctct 26296643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 38837319 - 38837208
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| || ||||  |||  |||||||||||||||||||   |||  || | |||||||||||||||   ||||||| |||||| |    
T  38837319 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtaggtgtacaagggtgtattgccacctaagggtgtctatgtatcatta 38837220  T
Q  116 ctcttttaaaaa 127  Q
    ||||||| ||||    
T  38837219 ctcttttgaaaa 38837208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 40846111 - 40846218
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    |||||||||||  |||||| || ||||||| |  || ||| ||||||||||||| |||||||  | |||||||||||||||  |||| ||| ||||||||    
T  40846111 agagaaagtgtatttgtgcggggtccatataactacatgttagatttttgtgtggatgtcaaggggtgtattgccacctaaggatgtttatgtatcataa 40846210  T
Q  116 ctctttta 123  Q
    ||| ||||    
T  40846211 ctccttta 40846218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 46033799 - 46033902
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||| | ||||||||| |  | ||| ||| |||||||||||||||| ||||  ||| ||| | ||||||||||||||| ||| ||||| ||||||||    
T  46033799 agagaaaatatgcttgtgcggagttcatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaagaatatctatgtatcataa 46033898  T
Q  116 ctct 119  Q
    ||||    
T  46033899 ctct 46033902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 4999512 - 4999614
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    |||||||||||| |||||| || ||||  |||  |||| |||||||||||||||  ||||||||| |||||||||| ||||   ||||||| |||||| |    
T  4999512 agagaaagtgtgtttgtgcggggtccacgtgactacgtatcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcatta 4999611  T
Q  116 ctc 118  Q
    |||    
T  4999612 ctc 4999614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 38267142 - 38267040
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| || ||||  |||  ||||||||||||||||||||  ||||||| | ||||||| ||| |||   ||||||| |||||| |    
T  38267142 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacataagggtgtctatgtatcatta 38267043  T
Q  116 ctc 118  Q
    |||    
T  38267042 ctc 38267040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 122
Target Start/End: Complemental strand, 18207249 - 18207176
Alignment:
Q  49 cacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataactctttt 122  Q
    ||||||| |||||||||| ||  |||||| || |||||||||||||||   ||||||| |||||||||||||||    
T  18207249 cacgtgttagatttttgtatgggtgtcaagaggtgtattgccacctaaggttgtctatgtatcataactctttt 18207176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 16374822 - 16374894
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattg 88  Q
    |||||| |||||||||||   ||||||  ||| ||||||||||||||||||||| |||||||  |||||||||    
T  16374822 agagaatgtgtgcttgtgtgagatccacgtgaccacgtgtcagatttttgtgtggatgtcaagggatgtattg 16374894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 45223118 - 45223038
Alignment:
Q  42 atatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataactctttt 122  Q
    ||||||| |||||||||||||||||||  ||||  ||  ||||||||||||||||  |||| ||| |||||| ||||||||    
T  45223118 atatgattacgtgtcagatttttgtgtagatgttcaagaatgtattgccacctaaggatgtatatatatcattactctttt 45223038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 41423784 - 41423682
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||| | ||||||| | ||||| |  ||| ||| |||||||||||||||| | |||||| || |||||| ||| ||||  |||||||| ||||||||    
T  41423784 agagaaaatatgcttgtacgggatctacgtgaccacatgtcagatttttgtgtaagtgtcaagaggtgtattaccatctaatgatgtctatgtatcataa 41423685  T
Q  116 ctc 118  Q
    |||    
T  41423684 ctc 41423682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 37038579 - 37038478
Alignment:
Q  18 agaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataact 117  Q
    ||||||||||||||||| |||||||  |||  ||||||||||||||||||||  ||||||| | |||||||||||||||| |||||||| |||||| |||    
T  37038579 agaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattact 37038480  T
Q  118 ct 119  Q
    ||    
T  37038479 ct 37038478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 32032826 - 32032724
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||| |||||||||||||||||||  ||| ||||||||||||||||| ||||| || |||||||||||||||||   ||| ||| ||||||||    
T  32032826 agagaaagtgtacttgtgcaggatccatatggccacatgtcagatttttgtgtggatgtc-aaggatgtattgccacctaagggtgtttatgtatcataa 32032728  T
Q  116 ctct 119  Q
    ||||    
T  32032727 ctct 32032724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 5957932 - 5957826
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    |||||||||||| |||||| |||||||  |||  ||||||||||||||||||||  ||||||| | ||||||||||||||| ||||||||| |||||| |    
T  5957932 agagaaagtgtgattgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagaatgtctatgtatcatta 5957833  T
Q  116 ctctttt 122  Q
    || ||||    
T  5957832 ctttttt 5957826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 43414579 - 43414681
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| |||||||| ||| ||||||| |||||||||||||  ||||||| | ||| |||||| ||||  |||||||| ||||||||    
T  43414579 agagaaagtgtgcttgtgcgggatccatgtgaccacgtgttagatttttgtgtgggtgtcaaagggtgtgttgccatctaaggatgtctatgtatcataa 43414678  T
Q  116 ctc 118  Q
    |||    
T  43414679 ctc 43414681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 40423941 - 40424021
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaa 96  Q
    ||||||||||||||||||| || |||| ||||  |||||||||||||||||||| |||||||| | |||||||||||||||    
T  40423941 agagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaa 40424021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 15048180 - 15048281
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| || ||||| ||   ||||||||||||||||||||  ||||||| | |||||||||||||||  |||||||| ||||||||    
T  15048180 agagaaagtgtgcttgtgcggggtccatgtggctacgtgtcagatttttgtgtg-gtgtcaaagggtgtattgccacctaaggatgtctatgtatcataa 15048278  T
Q  116 ctc 118  Q
    |||    
T  15048279 ctc 15048281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 15197435 - 15197333
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| || ||||  |||  ||||||||||||||||||||  ||||||| | ||||||||||||||| | ||||||| |||||| |    
T  15197435 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcatta 15197336  T
Q  116 ctc 118  Q
    |||    
T  15197335 ctc 15197333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 10621085 - 10621185
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| ||||| || ||   ||||||||||||||||||||  ||||||| | |||||| ||||||||  |||||||| ||||||||    
T  10621085 agagaaagtgtgcttgtgcgggatcgatgtggctacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcataa 10621184  T
Q  116 c 116  Q
    |    
T  10621185 c 10621185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 504119 - 504221
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    |||||| |||||||||||| || ||||  |||  ||||||||||||||||||||  ||||||||| |||||||||||||||   ||||||| |||||| |    
T  504119 agagaatgtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcatta 504218  T
Q  116 ctc 118  Q
    |||    
T  504219 ctc 504221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 1179938 - 1180040
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| | ||||| ||||  ||||||||||||||||||||  ||||||| | |||||| ||||||||   ||||||| |||||| |    
T  1179938 agagaaagtgtgcttgtgcggaatccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcatta 1180037  T
Q  116 ctc 118  Q
    |||    
T  1180038 ctc 1180040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 16056399 - 16056505
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||| ||||||| || ||||||||  ||| |||||||||||||||||  ||||||  ||||||||| ||| |||  |||| ||| ||||||||    
T  16056399 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaagggatgtattgtcacataaggatgtttatgtatcataa 16056498  T
Q  116 ctctttt 122  Q
    |||||||    
T  16056499 ctctttt 16056505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 16383479 - 16383373
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||| ||||||| || ||||||||  ||| |||||||||||||||||  ||||||  | |||||||||||||||   ||| ||| ||||||||    
T  16383479 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 16383380  T
Q  116 ctctttt 122  Q
    |||||||    
T  16383379 ctctttt 16383373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 14548024 - 14547944
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaa 96  Q
    ||||||||||||||||||| || ||||  |||  ||||||||||||||||||||  ||||||| | |||||||||||||||    
T  14548024 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaa 14547944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 15258927 - 15259031
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||| |||||||||||||| ||||  ||| ||| |||||||||||| |||| ||||| |  |||||||||||| |||| | | ||||| ||||||||    
T  15258927 agagaaaatgtgcttgtgcagggtccacgtgaccacatgtcagatttttatgtggatgtccagggatgtattgccatctaagagtatctatgtatcataa 15259026  T
Q  116 ctctt 120  Q
    |||||    
T  15259027 ctctt 15259031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 24307791 - 24307895
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||| ||||||| || ||||||||  ||| | |||||||||||||||  ||||||  |||||||||||||||||   ||| ||| ||||||||    
T  24307791 agagaaagtgtacttgtgcggggtccatatggccacatatcagatttttgtgtgggtgtcaagggatgtattgccacctaagggtgtttatgtatcataa 24307890  T
Q  116 ctctt 120  Q
    |||||    
T  24307891 ctctt 24307895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 12831149 - 12831047
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| || ||||  |||  ||||||||||||||||||||  ||||||| | ||||||| |||||||   ||||||| |||||| |    
T  12831149 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcatta 12831050  T
Q  116 ctc 118  Q
    |||    
T  12831049 ctc 12831047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 23122595 - 23122697
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||| ||| || ||||  |||  ||||||||||||||||||||  ||||||||| ||||||||||| |||   ||||||| |||||| |    
T  23122595 agagaaagtgtgcttatgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacttaagggtgtctatgtatcatta 23122694  T
Q  116 ctc 118  Q
    |||    
T  23122695 ctc 23122697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 34012294 - 34012396
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| |||||||  |||  |||||||| |||||||||||  ||||||| | |||||| ||||||||   ||||||| |||||| |    
T  34012294 agagaaagtgtgcttgtgcgggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcatta 34012393  T
Q  116 ctc 118  Q
    |||    
T  34012394 ctc 34012396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 4854861 - 4854965
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    |||||||||||||||||||||| ||||| ||  ||| | |||||||||| |||   ||| ||| | |||||||||||||||  |||||||| |||||| |    
T  4854861 agagaaagtgtgcttgtgcagggtccatgtggccacatatcagatttttatgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcatta 4854960  T
Q  116 ctctt 120  Q
    |||||    
T  4854961 ctctt 4854965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 34307318 - 34307214
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||| ||||||| || | ||||||  ||| |||||||||||||||||  ||||||  | |||||||||||||||   ||| ||| ||||||||    
T  34307318 agagaaagtgtacttgtgcggggttcatatgtccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 34307219  T
Q  116 ctctt 120  Q
    |||||    
T  34307218 ctctt 34307214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 42221617 - 42221513
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    |||||||||||||||||   || |||||||||| ||||||||||||||||||||  |||| |   |||||||| |||||||  |||| ||| |||||| |    
T  42221617 agagaaagtgtgcttgtatggggtccatatgattacgtgtcagatttttgtgtgggtgtccaggaatgtattgtcacctaaggatgtatatgtatcatta 42221518  T
Q  116 ctctt 120  Q
    |||||    
T  42221517 ctctt 42221513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 30479472 - 30479574
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||| |||||||  | |||||||   ||| |||||||||||| |||| |||||||| | |||||||||||||||   ||| ||| ||||||||    
T  30479472 agagaaagtgtacttgtgcgaggtccatatagccacatgtcagatttttatgtggatgtcaaagggtgtattgccacctaagggtgtttatgtatcataa 30479571  T
Q  116 ctc 118  Q
    |||    
T  30479572 ctc 30479574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 10284629 - 10284734
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| || ||||  |||  |||||||| |||||||||||  |||||||   ||||||| ||| |||   ||||||| ||||||||    
T  10284629 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagagtgtattgtcacttaagggtgtctatgtatcataa 10284728  T
Q  116 ctcttt 121  Q
    ||||||    
T  10284729 ctcttt 10284734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 8841430 - 8841510
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaa 96  Q
    ||||||||||||||||||| || ||||  |||  |||||| |||||||||||||  ||||||| | |||| ||||||||||    
T  8841430 agagaaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtactgccacctaa 8841510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 119
Target Start/End: Complemental strand, 25838252 - 25838196
Alignment:
Q  63 ttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataactct 119  Q
    ||||||| |||||||||  |||||||||||||||  || ||||||||||||||||||    
T  25838252 ttgtgtggatgtcaaaaagtgtattgccacctaaggatatctatttatcataactct 25838196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 55 - 122
Target Start/End: Complemental strand, 24307692 - 24307625
Alignment:
Q  55 tcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataactctttt 122  Q
    |||||||||||||||  ||||||  |||||||||||||||||   ||| ||| |||||||||||||||    
T  24307692 tcagatttttgtgtgggtgtcaatggatgtattgccacctaagggtgtttatgtatcataactctttt 24307625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 9122287 - 9122234
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtg 69  Q
    ||||||||||||||||||| |||||||  |||  || |||||||||||||||||    
T  9122287 agagaaagtgtgcttgtgcgggatccacgtgactacatgtcagatttttgtgtg 9122234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 10107 - 10218
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||| |  | ||||  |||  ||||||||||||||| |||| |||||||| ||||||||||||||||||  ||||||| ||||||||    
T  10107 agagaaagtgtgcttgtacgcggtccacgtgactacgtgtcagatttttatgtggatgtcaaaggatgtattgccacctaaaggtgtctatgtatcataa 10206  T
Q  116 ctcttttaaaaa 127  Q
    ||||||| ||||    
T  10207 ctctttttaaaa 10218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 41236449 - 41236347
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| || ||||  |||  |||||||||||||||||||| |||||||||| |||||||||||||||   ||||||| |||||| |    
T  41236449 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgtcaaaaggtgtattgccacctaagggtgtctatgtatcatta 41236350  T
Q  116 ctc 118  Q
    |||    
T  41236349 ctc 41236347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 50052426 - 50052532
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| || ||||  |||  ||||||||||||||||||||  ||||||| | |||||||||||||||  |||||||| |||||| |    
T  50052426 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcatta 50052525  T
Q  116 ctctttt 122  Q
    |||||||    
T  50052526 ctctttt 50052532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 50526171 - 50526271
Alignment:
Q  18 agaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataact 117  Q
    |||||| |||||||||| | |||||  ||| |||||||||||||||||||||  ||||||| | |||||||||||||||| |||||||| |||||| |||    
T  50526171 agaaagcgtgcttgtgcggaatccacgtgaccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattact 50526270  T
Q  118 c 118  Q
    |    
T  50526271 c 50526271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 55475293 - 55475189
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||| ||| |||||| ||||||||  ||| |||||||||||||||||  ||||||| | |||||||||||||||  |||| ||| ||||||||    
T  55475293 agagaaagtgtacttatgcagggtccatatggccacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtttatgtatcataa 55475194  T
Q  116 ctctt 120  Q
    |||||    
T  55475193 ctctt 55475189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 19670714 - 19670825
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||| ||||||| || ||||||||  ||| |||||||||||||||||| ||||||  | |||||||||||||||   ||| ||| ||||||||    
T  19670714 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgagtgtcaaggggtgtattgccacctaagggtgtttatgtatcataa 19670813  T
Q  116 ctcttttaaaaa 127  Q
    ||||||| ||||    
T  19670814 ctcttttcaaaa 19670825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 47986310 - 47986207
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||| ||||||| || ||||||||  ||| ||||||||||||||||| |||||||  |||||||||||||||||   ||| ||| ||||||||    
T  47986310 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtggatgtcaagggatgtattgccacctaagggtgtttatgtatcataa 47986211  T
Q  116 ctct 119  Q
    ||||    
T  47986210 ctct 47986207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 56300163 - 56300233
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtat 86  Q
    |||||||||||| ||||||||||| ||||||| ||| ||||||||||||||||| |||||||| |||||||    
T  56300163 agagaaagtgtgtttgtgcaggattcatatgaccacatgtcagatttttgtgtggatgtcaaatgatgtat 56300233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 29547961 - 29548061
Alignment:
Q  20 aaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataactct 119  Q
    ||||||| ||| ||| |||||||||||  ||| |||||||||||||||||  ||||||  |||||||||||||||||  |||| ||| ||||||||||||    
T  29547961 aaagtgtacttatgcgggatccatatggccacatgtcagatttttgtgtgggtgtcaagggatgtattgccacctaaggatgtttatgtatcataactct 29548060  T
Q  120 t 120  Q
    |    
T  29548061 t 29548061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 32767060 - 32766956
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||| |||||||||| ||||||||  ||| |||||||||||||| ||  ||||||  | ||||||||||||||| | ||| ||| ||||||||    
T  32767060 agagaaagtgtacttgtgcagggtccatatggccacatgtcagatttttgtatgggtgtcaaggggtgtattgccacctaagagtgtttatgtatcataa 32766961  T
Q  116 ctctt 120  Q
    |||||    
T  32766960 ctctt 32766956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 6034146 - 6034044
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| |||||||  |||  || |||||||||||||||||  ||||||| | |||||||||||||||   ||||||| |||||| |    
T  6034146 agagaaagtgtgcttgtgcgggatccacgtgactacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 6034047  T
Q  116 ctc 118  Q
    |||    
T  6034046 ctc 6034044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 42044365 - 42044471
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| || ||||  |||  ||||||||||||||||||||  |||  || |||||||||||||||||   ||||||| |||||| |    
T  42044365 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtacaaggatgtattgccacctaagggtgtctatgtatcatta 42044464  T
Q  116 ctctttt 122  Q
    |||||||    
T  42044465 ctctttt 42044471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 29239988 - 29239883
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||  || ||||  |||  |||||| ||||||||||||| |||||||| | |||||||||||||||   ||||||| |||||| |    
T  29239988 agagaaagtgtgcttgtgtggggtccacgtgactacgtgttagatttttgtgtggatgtcaaatggtgtattgccacctaagggtgtctatgtatcatta 29239889  T
Q  116 ctcttt 121  Q
    ||||||    
T  29239888 ctcttt 29239883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 48183047 - 48183151
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| || ||||  |||  ||||||||||||||||||||  ||||||| | ||||||||||| |||   ||||||| |||||| |    
T  48183047 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacgtaagggtgtctatgtatcatta 48183146  T
Q  116 ctctt 120  Q
    |||||    
T  48183147 ctctt 48183151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 40574881 - 40574779
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatca-cgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcata 114  Q
    ||||||||||||||||| | |||||||| | | || |||||||||||||||||||  ||||||| | |||||| ||||||||  |||||||| |||||||    
T  40574881 agagaaagtgtgcttgttcgggatccatgt-agcagcgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcata 40574783  T
Q  115 actc 118  Q
    ||||    
T  40574782 actc 40574779  T

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Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 44536744 - 44536846
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||| ||| ||  || || |||||| ||| ||||||||||||||||| ||||| || | ||||||||||||||||| ||| ||| ||||||||    
T  44536744 agagaaagtgtacttatgtggggtctatatgaccacatgtcagatttttgtgtggatgtc-aagggtgtattgccacctaaaagtgtttatgtatcataa 44536842  T
Q  116 ctct 119  Q
    ||||    
T  44536843 ctct 44536846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 50813890 - 50813993
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||| ||||||| || | ||||||| ||| |||||||||||||||||  ||||||  | |||||| |||||||| | ||| ||| ||||||||    
T  50813890 agagaaagtgtacttgtgcggggttcatatgaccacatgtcagatttttgtgtgggtgtcaaggggtgtattaccacctaagagtgtttatgtatcataa 50813989  T
Q  116 ctct 119  Q
    ||||    
T  50813990 ctct 50813993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 480445 - 480551
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||| | || ||||  |||  ||||||||||||||||||||  ||||||| | ||||||| |||||||   ||||||| |||||| |    
T  480445 agagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcatta 480544  T
Q  116 ctctttt 122  Q
    |||||||    
T  480545 ctctttt 480551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 11511460 - 11511562
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| || ||||  |||  ||||||||||||||| ||||  ||||||| | |||||||||||||||   ||||||| |||||| |    
T  11511460 agagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 11511559  T
Q  116 ctc 118  Q
    |||    
T  11511560 ctc 11511562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 31910294 - 31910192
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| || ||||| ||   | ||||||||||||||||||  |||||||   ||||||| |||||||  |||||||| ||||||||    
T  31910294 agagaaagtgtgcttgtgcggggtccatgtggctatgtgtcagatttttgtgtgggtgtcaaagagtgtattgtcacctaaggatgtctatgtatcataa 31910195  T
Q  116 ctc 118  Q
    |||    
T  31910194 ctc 31910192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 17983741 - 17983821
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaa 96  Q
    ||||||||||| ||||||| || ||||||||  ||| |||||||||||||||||  ||||||  | |||||||||||||||    
T  17983741 agagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaa 17983821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 29977987 - 29977908
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccaccta 95  Q
    ||||||||||||||||||  || |||||||||  ||||||||||||||||||||  ||| ||  | ||||||||||||||    
T  29977987 agagaaagtgtgcttgtgtggggtccatatgactacgtgtcagatttttgtgtgggtgttaaggggtgtattgccaccta 29977908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 3481756 - 3481654
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||  || ||||  |||  | ||||||||||||||||||  |||||||   ||||||||||||||||  ||||||| |||||| |    
T  3481756 agagaaagtgtgcttgtgtggggtccacgtgactatgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaaaggtgtctatgtatcatta 3481657  T
Q  116 ctc 118  Q
    |||    
T  3481656 ctc 3481654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 8343161 - 8343263
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||| | ||| ||| || ||||||||  ||| |||||||||||| |||   ||||||| |||||||||||||||||  |||| ||| ||||||||    
T  8343161 agagaaagtatacttatgcggggtccatatggccacatgtcagatttttatgtaggtgtcaaaggatgtattgccacctaaggatgtttatgtatcataa 8343260  T
Q  116 ctc 118  Q
    |||    
T  8343261 ctc 8343263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 41823984 - 41823931
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtg 69  Q
    ||||||||||||||||||| || ||||| |||  ||||||||||||||||||||    
T  41823984 agagaaagtgtgcttgtgcggggtccatgtgactacgtgtcagatttttgtgtg 41823931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 54473535 - 54473633
Alignment:
Q  20 aaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataactc 118  Q
    ||||||||||||||| || ||||  |||  |||||| |||||||||||||  ||||||| | ||||||| |||||||   ||||||| |||||| ||||    
T  54473535 aaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaatggtgtattgtcacctaagggtgtctatgtatcattactc 54473633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1268 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 927 - 1029
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| |||| ||  |||  ||||||||| |||||||||| |||| ||| | |||||||||||||||| |||||||| |||||| |    
T  927 agagaaagtgtgcttgtgcgggattcacgtgactacgtgtcagttttttgtgtggatgttaaagggtgtattgccacctaaagatgtctatgtatcatta 1026  T
Q  116 ctc 118  Q
    |||    
T  1027 ctc 1029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1267 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 927 - 1029
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||||||| |||| ||  |||  ||||||||| |||||||||| |||| ||| | |||||||||||||||| |||||||| |||||| |    
T  927 agagaaagtgtgcttgtgcgggattcacgtgactacgtgtcagttttttgtgtggatgttaaagggtgtattgccacctaaagatgtctatgtatcatta 1026  T
Q  116 ctc 118  Q
    |||    
T  1027 ctc 1029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 4131 - 4029
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacctaaaaatgtctatttatcataa 115  Q
    ||||||||||||||| ||| |||||||  | |  ||||||||||||||||||||  ||| ||||| |||||||||| |||||  ||||||| |||||| |    
T  4131 agagaaagtgtgcttatgcgggatccacgtaactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgccatctaaaggtgtctatgtatcatta 4032  T
Q  116 ctc 118  Q
    |||    
T  4031 ctc 4029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 152600 - 152523
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccacc 93  Q
    |||||||||||  |||||| |||||||||||| ||| |||||||||||||||||  ||||||  | ||||||||||||    
T  152600 agagaaagtgtatttgtgcgggatccatatgaccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacc 152523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 17156 - 17077
Alignment:
Q  16 agagaaagtgtgcttgtgcaggatccatatgatcacgtgtcagatttttgtgtgaatgtcaaaagatgtattgccaccta 95  Q
    ||||||| ||||||||||| || ||||| ||| ||| ||||||||||||||||| ||||| |  |||||||||| |||||    
T  17156 agagaaaatgtgcttgtgcggggtccatgtgaccacatgtcagatttttgtgtggatgtcgagggatgtattgcaaccta 17077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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