View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17991_high_3 (Length: 626)

Name: NF17991_high_3
Description: NF17991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17991_high_3
NF17991_high_3
[»] chr7 (20 HSPs)
chr7 (17-395)||(15672059-15672434)
chr7 (22-277)||(15680277-15680528)
chr7 (402-577)||(37405525-37405700)
chr7 (16-276)||(15666772-15667035)
chr7 (436-559)||(28124697-28124820)
chr7 (436-559)||(28126524-28126647)
chr7 (16-162)||(16022935-16023081)
chr7 (436-559)||(4895583-4895706)
chr7 (436-559)||(44963162-44963285)
chr7 (16-162)||(14603464-14603610)
chr7 (436-559)||(20046605-20046729)
chr7 (16-143)||(16170724-16170851)
chr7 (16-136)||(16101053-16101173)
chr7 (31-155)||(17847124-17847248)
chr7 (486-574)||(25471931-25472018)
chr7 (402-503)||(34844107-34844209)
chr7 (447-498)||(36989570-36989621)
chr7 (500-573)||(4880196-4880271)
chr7 (402-442)||(21631305-21631345)
chr7 (527-559)||(44962282-44962314)
[»] chr6 (16 HSPs)
chr6 (402-573)||(15868377-15868548)
chr6 (402-574)||(15866564-15866736)
chr6 (402-573)||(33869231-33869402)
chr6 (402-573)||(33866084-33866255)
chr6 (436-559)||(5376876-5377000)
chr6 (436-559)||(5378731-5378855)
chr6 (436-557)||(1088762-1088883)
chr6 (436-559)||(19645409-19645532)
chr6 (436-574)||(14611068-14611205)
chr6 (462-559)||(15149180-15149277)
chr6 (488-573)||(32079895-32079980)
chr6 (453-531)||(9415095-9415173)
chr6 (500-573)||(14620496-14620569)
chr6 (436-559)||(28884363-28884487)
chr6 (426-507)||(14618975-14619055)
chr6 (402-443)||(24544733-24544774)
[»] chr1 (15 HSPs)
chr1 (402-573)||(3284487-3284658)
chr1 (402-573)||(9312014-9312185)
chr1 (402-573)||(3282786-3282957)
chr1 (402-573)||(9310397-9310568)
chr1 (402-574)||(902061-902232)
chr1 (436-559)||(17449310-17449433)
chr1 (436-559)||(16808688-16808811)
chr1 (467-573)||(37664695-37664801)
chr1 (467-573)||(37674417-37674523)
chr1 (467-573)||(37702171-37702277)
chr1 (500-573)||(5924947-5925020)
chr1 (436-512)||(48941646-48941722)
chr1 (508-559)||(48940675-48940726)
chr1 (67-139)||(14534755-14534827)
chr1 (520-567)||(36580553-36580600)
[»] scaffold0251 (1 HSPs)
scaffold0251 (402-573)||(6211-6382)
[»] chr5 (4 HSPs)
chr5 (402-574)||(39787134-39787306)
chr5 (436-567)||(25076224-25076356)
chr5 (436-567)||(25134193-25134325)
chr5 (459-503)||(6569888-6569932)
[»] chr4 (15 HSPs)
chr4 (426-573)||(3529246-3529393)
chr4 (426-574)||(23985758-23985906)
chr4 (436-559)||(7040360-7040483)
chr4 (436-559)||(23564784-23564907)
chr4 (436-559)||(23566458-23566581)
chr4 (436-559)||(52520600-52520723)
chr4 (436-559)||(18656107-18656230)
chr4 (436-559)||(52518758-52518881)
chr4 (459-573)||(52545234-52545347)
chr4 (436-532)||(54296454-54296550)
chr4 (459-573)||(24807409-24807522)
chr4 (467-559)||(3274580-3274672)
chr4 (509-573)||(18395816-18395880)
chr4 (526-573)||(18320063-18320110)
chr4 (526-573)||(18398573-18398620)
[»] scaffold0057 (1 HSPs)
scaffold0057 (436-582)||(58762-58908)
[»] scaffold0289 (1 HSPs)
scaffold0289 (20-277)||(19644-19907)
[»] chr8 (10 HSPs)
chr8 (436-559)||(30224229-30224352)
chr8 (436-559)||(5567425-5567548)
chr8 (436-559)||(3375532-3375655)
chr8 (436-559)||(6428739-6428862)
chr8 (436-559)||(25249002-25249128)
chr8 (444-559)||(3379231-3379346)
chr8 (436-559)||(31032112-31032231)
chr8 (489-573)||(14935562-14935646)
chr8 (436-530)||(36535941-36536035)
chr8 (526-562)||(4676048-4676083)
[»] chr2 (5 HSPs)
chr2 (436-559)||(29758119-29758242)
chr2 (402-442)||(20957557-20957597)
chr2 (402-442)||(20957729-20957769)
chr2 (508-566)||(18739664-18739722)
chr2 (436-486)||(20516053-20516103)
[»] chr3 (8 HSPs)
chr3 (436-559)||(17402891-17403015)
chr3 (436-551)||(6789627-6789742)
chr3 (436-514)||(1140045-1140123)
chr3 (459-559)||(20302625-20302725)
chr3 (467-559)||(20327167-20327259)
chr3 (536-577)||(17579280-17579321)
chr3 (459-516)||(41874441-41874497)
chr3 (527-559)||(1140012-1140044)
[»] scaffold0006 (1 HSPs)
scaffold0006 (459-574)||(39129-39243)


Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 395
Target Start/End: Original strand, 15672059 - 15672434
Alignment:
Q  17 gagacagacatggaatcttcatcacacgtgattccaaaccagttgcatgaattattgccactccatgaagataacaaagcttggctttggttatcaagac 116  Q
    ||||| ||||||||||||||||||||||| ||||| ||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||    
T  15672059 gagacggacatggaatcttcatcacacgtaattcccaaccagttgcatgaaatattgtcattccatgaagataacaaagcttggctttggttatcaagac 15672158  T
Q  117 tcgctttccacttcaacaaagcacttgtttctctactttgtaaagtggaagaagtagatgcaattgttagggaaaaaccaacaattgaagaagaagggtt 216  Q
    | ||||||||||||||||| ||||||| |||||||||||||||||| ||||||| ||||| |||||||  |||||||||||||||||||||||           
T  15672159 ttgctttccacttcaacaacgcacttgcttctctactttgtaaagtagaagaagcagatgaaattgtt--ggaaaaaccaacaattgaagaagg------ 15672250  T
Q  217 gttagttatgagtggacaaaagtacattgagaaaaacagccaaaagtgtacacacttcatgacttgcagcattggaaatatggacaccatggaagctata 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||   || ||| |||||||||||||||||||||||||||||    
T  15672251 gttagttatgagtggacaaaagtacattgagaaaaacagccaaaagagtacacacttcatggtctgaagcgttggaaatatggacaccatggaagctata 15672350  T
Q  317 gggtgatgg-------cttaagatactttgttatgattggaagcaatatgtagttagtagcgttgcacatatttattggaaaccaa 395  Q
    |||||| ||       ||||||||||||| || ||||||||  | ||||||| ||||||| |||||| |||||||| |||||||||    
T  15672351 gggtgagggcttagcacttaagatactttattttgattgga--ctatatgtaattagtagtgttgcagatatttataggaaaccaa 15672434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 22 - 277
Target Start/End: Original strand, 15680277 - 15680528
Alignment:
Q  22 agacatggaatcttcatcacacgtgattccaaaccagttgcatgaattattgccactccatgaagataacaaagcttggctttggttatcaagactcgct 121  Q
    |||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  15680277 agacatcgaatcttcatcacacgtgattccgaaccagctgcatgaattattgccactccatgaagataacaaagcttggctttggttatcaagacttgct 15680376  T
Q  122 ttccacttcaacaaagcacttgtttctctactttgtaaagtggaagaagtagatgcaattgttagggaaaaaccaacaattgaagaagaagggttgttag 221  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  |      
T  15680377 ttccacttcaacaaagcacttgcttctctactttgtaaagtggaagaagtagatgaaattgttagggaaaaaccaacaattgaagaagaagggttcat-- 15680474  T
Q  222 ttatgagtggacaaaagtacattgagaaaaacagccaaaagtgtacacacttcatg 277  Q
     |||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  15680475 -tatgagtggacaaaagtacattgagaaaaacagccaaaa-agtacacacttcatg 15680528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 402 - 577
Target Start/End: Original strand, 37405525 - 37405700
Alignment:
Q  402 atagtaactcatagtagagtaaactagatttaacaaaagataatgaatgaatacaatagtgttcctatatatagagattagtttgagtaactaactccaa 501  Q
    ||||| |||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  37405525 atagtgactcataggagagtaaactagatttaacaaaagatagtgaatgagtacaatagtgttcctatatatagagattagtttgagtaactaactctaa 37405624  T
Q  502 ctaacttctaaccaagctactaattctagtttacctatcaactaactatagttgattattcatactctaataaaaa 577  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  37405625 ctaacttctaaccaagctactaactctagtttatctatcaactaactatagttgattattcatactctaataaaaa 37405700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 16 - 276
Target Start/End: Original strand, 15666772 - 15667035
Alignment:
Q  16 agagacagacatggaatcttcatcacacgtgattccaaaccagttgcatgaattattgccactccatgaagataacaaagcttggctttggttatcaaga 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  15666772 agagacagacatggaatcttcatcacacgtgattccaaaccagttgcatgaattattgccactccatgaagataacaaaacttggctttggttgtcaaga 15666871  T
Q  116 ctcgctttccacttcaacaaagcacttgtttctctactttgtaaagtggaagaagtagatgcaattgttagggaaaaaccaacaattgaagaagaag--- 212  Q
    || ||||||||||||||||||||||||| |||| | ||||| | |||||| ||||  |  | ||| || | |||| ||||||| |  ||||||||||       
T  15666872 cttgctttccacttcaacaaagcacttgcttctttgctttgaacagtggatgaagctgcagaaatagtaaaggaagaaccaaccacagaagaagaagaag 15666971  T
Q  213 --ggttgttagttatgagtggacaaaagtacattgagaaaaacagccaaaagtgtacacacttcat 276  Q
      ||  |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  15666972 aagg--gttagttatgagtgcacaaaagtacattgagaaaaacagccaaaagtgtacacacttcat 15667035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 436 - 559
Target Start/End: Original strand, 28124697 - 28124820
Alignment:
Q  436 aaaagataatgaatgaatacaatagtgttcctatatatagagattagtttgagtaactaactccaactaacttctaaccaagctactaattctagtttac 535  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||    
T  28124697 aaaagatgatgaatgagtacaatagtgttcctatatatagagattagtttgagtaactaactctaactaacttctaaccaaactactaactctagtttac 28124796  T
Q  536 ctatcaactaactatagttgatta 559  Q
     |||||||||||||||||||||||    
T  28124797 ttatcaactaactatagttgatta 28124820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 436 - 559
Target Start/End: Original strand, 28126524 - 28126647
Alignment:
Q  436 aaaagataatgaatgaatacaatagtgttcctatatatagagattagtttgagtaactaactccaactaacttctaaccaagctactaattctagtttac 535  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||    
T  28126524 aaaagatgatgaatgagtacaatagtgttcctatatatagagattagtttgagtaactaactctaactaacttctaaccaaactactaactctagtttac 28126623  T
Q  536 ctatcaactaactatagttgatta 559  Q
     |||||||||||||||||||||||    
T  28126624 ttatcaactaactatagttgatta 28126647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 16023081 - 16022935
Alignment:
Q  16 agagacagacatggaatcttcatcacacgtgattccaaaccagttgcatgaattattgccactccatgaagataacaaagcttggctttggttatcaaga 115  Q
    ||||||||| ||||||||||||| ||| |  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  16023081 agagacagaaatggaatcttcattacaagaaattccaagccagttgcatgaattattgccactccatgaagataacaaagcttggctatggttgtcaaga 16022982  T
Q  116 ctcgctttccacttcaacaaagcacttgtttctctactttgtaaagt 162  Q
    || | ||||||||||| ||||||||||| ||||||||||||||||||    
T  16022981 cttgttttccacttcagcaaagcacttgcttctctactttgtaaagt 16022935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 436 - 559
Target Start/End: Complemental strand, 4895706 - 4895583
Alignment:
Q  436 aaaagataatgaatgaatacaatagtgttcctatatatagagattagtttgagtaactaactccaactaacttctaaccaagctactaattctagtttac 535  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||| ||||||||||    
T  4895706 aaaagatgatgaatgagtacaatagtgttcctatatatagagattagtttgagtaaataactctaactaacttctaaccaaactactaactctagtttac 4895607  T
Q  536 ctatcaactaactatagttgatta 559  Q
     |||||||||||||||||||||||    
T  4895606 ttatcaactaactatagttgatta 4895583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 436 - 559
Target Start/End: Complemental strand, 44963285 - 44963162
Alignment:
Q  436 aaaagataatgaatgaatacaatagtgttcctatatatagagattagtttgagtaactaactccaactaacttctaaccaagctactaattctagtttac 535  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||  |||||||||    
T  44963285 aaaagatgatgaatgagtacaatagtgttcctatatatagagattaatttgagtaactaactctaactaacttctaaccaagctactaaccctagtttac 44963186  T
Q  536 ctatcaactaactatagttgatta 559  Q
     |||||||||||||||||||||||    
T  44963185 ttatcaactaactatagttgatta 44963162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 14603610 - 14603464
Alignment:
Q  16 agagacagacatggaatcttcatcacacgtgattccaaaccagttgcatgaattattgccactccatgaagataacaaagcttggctttggttatcaaga 115  Q
    ||||||||| ||||||||||| | ||| |  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  14603610 agagacagaaatggaatcttctttacaagaaattccaagccagttgcatgaattattgccactccatgaagataacaaagcttggctatggttgtcaaga 14603511  T
Q  116 ctcgctttccacttcaacaaagcacttgtttctctactttgtaaagt 162  Q
    ||   ||||||||||||||||||||||| ||||||||||||||||||    
T  14603510 cttattttccacttcaacaaagcacttgcttctctactttgtaaagt 14603464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 436 - 559
Target Start/End: Original strand, 20046605 - 20046729
Alignment:
Q  436 aaaagataatgaatgaatacaatagtgttcctatatata-gagattagtttgagtaactaactccaactaacttctaaccaagctactaattctagttta 534  Q
    |||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||    
T  20046605 aaaagatattgaatgagtacaatagtgttcctatatataagagattagtttgagtaactaactctaactaacttctaaccaaactactaactctagttta 20046704  T
Q  535 cctatcaactaactatagttgatta 559  Q
    | |||||||||||||||||||||||    
T  20046705 cttatcaactaactatagttgatta 20046729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 16170851 - 16170724
Alignment:
Q  16 agagacagacatggaatcttcatcacacgtgattccaaaccagttgcatgaattattgccactccatgaagataacaaagcttggctttggttatcaaga 115  Q
    ||||||||| ||||||||||| | ||| |  ||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||| ||||| ||||||    
T  16170851 agagacagaaatggaatcttctttacaagaaattccaagccagttgcatgaattattgccactccatgaagatagcaaagtttggctatggttgtcaaga 16170752  T
Q  116 ctcgctttccacttcaacaaagcacttg 143  Q
    || |||||||||||||||||||||||||    
T  16170751 cttgctttccacttcaacaaagcacttg 16170724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 16101173 - 16101053
Alignment:
Q  16 agagacagacatggaatcttcatcacacgtgattccaaaccagttgcatgaattattgccactccatgaagataacaaagcttggctttggttatcaaga 115  Q
    ||||||||| ||||||||||| | ||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||     
T  16101173 agagacagaaatggaatcttctttacaagaaattccaaaccagttgcatgaattattgccactccatgaagataacaaagcttggctttgattgtcaagg 16101074  T
Q  116 ctcgctttccacttcaacaaa 136  Q
    || ||||||||| ||||||||    
T  16101073 cttgctttccacatcaacaaa 16101053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 31 - 155
Target Start/End: Complemental strand, 17847248 - 17847124
Alignment:
Q  31 atcttcatcacacgtgattccaaaccagttgcatgaattattgccactccatgaagataacaaagcttggctttggttatcaagactcgctttccacttc 130  Q
    |||||||||||| || ||||| | ||||||||||||||| |||||| |||||||||||||||||||||||||||   | |||||  |   |||||| |||    
T  17847248 atcttcatcacatgtaattcccatccagttgcatgaattgttgccattccatgaagataacaaagcttggctttctatttcaaggttgcttttccatttc 17847149  T
Q  131 aacaaagcacttgtttctctacttt 155  Q
    ||||||| ||||| |||||||||||    
T  17847148 aacaaagaacttgcttctctacttt 17847124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 486 - 574
Target Start/End: Original strand, 25471931 - 25472018
Alignment:
Q  486 gagtaactaactccaactaacttct-aaccaagctactaattctagtttacctatcaactaactatagttgattattcatactctaataa 574  Q
    ||||||||||||||  |||||| || |||||| ||||||| ||||||| ||||||||||||||||||||| |||||||||||| ||||||    
T  25471931 gagtaactaactcc--ctaactactgaaccaacctactaactctagttaacctatcaactaactatagttaattattcatactataataa 25472018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 503
Target Start/End: Complemental strand, 34844209 - 34844107
Alignment:
Q  402 atagtaactcatagtagagtaaactagatttaacaaaagat--aatgaatgaatacaatagtgttcctatatatagagattagtttgagtaactaactcc 499  Q
    ||||| ||||||||||||||||||||||||| | |||||||  | ||||   |||||  ||||||||||||||||||| |||| ||| |||||||||||     
T  34844209 atagtgactcatagtagagtaaactagatttgataaaagatggattgaaatgatacatgagtgttcctatatatagagtttag-ttgtgtaactaactct 34844111  T
Q  500 aact 503  Q
    ||||    
T  34844110 aact 34844107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 447 - 498
Target Start/End: Original strand, 36989570 - 36989621
Alignment:
Q  447 aatgaatacaatagtgttcctatatatagagattagtttgagtaactaactc 498  Q
    ||||| ||||||| |||| |||||||||||||||||||||| ||||||||||    
T  36989570 aatgactacaataatgtttctatatatagagattagtttgaataactaactc 36989621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 500 - 573
Target Start/End: Complemental strand, 4880271 - 4880196
Alignment:
Q  500 aactaacttctaaccaa-gctactaattctagtttacct-atcaactaactatagttgattattcatactctaata 573  Q
    ||||||||||||||||| |||| |||   ||||| |||| |||||||||||||||| ||||||||||||| |||||    
T  4880271 aactaacttctaaccaaagctattaacgttagttaaccttatcaactaactatagtcgattattcatactttaata 4880196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 402 - 442
Target Start/End: Original strand, 21631305 - 21631345
Alignment:
Q  402 atagtaactcatagtagagtaaactagatttaacaaaagat 442  Q
    ||||| ||||||||||||||||||||||||| | |||||||    
T  21631305 atagtgactcatagtagagtaaactagatttgataaaagat 21631345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 527 - 559
Target Start/End: Complemental strand, 44962314 - 44962282
Alignment:
Q  527 ctagtttacctatcaactaactatagttgatta 559  Q
    ||||||||| |||||||||||||||||||||||    
T  44962314 ctagtttacttatcaactaactatagttgatta 44962282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 148; Significance: 9e-78; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 402 - 573
Target Start/End: Complemental strand, 15868548 - 15868377
Alignment:
Q  402 atagtaactcatagtagagtaaactagatttaacaaaagataatgaatgaatacaatagtgttcctatatatagagattagtttgagtaactaactccaa 501  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  15868548 atagtgactcataggagagtaaactagatttaacaaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgagtaactaactctaa 15868449  T
Q  502 ctaacttctaaccaagctactaattctagtttacctatcaactaactatagttgattattcatactctaata 573  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  15868448 ctaacttctaaccaagctattaactctagtttacctatcaactaactatagttgattattcatactctaata 15868377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 402 - 574
Target Start/End: Complemental strand, 15866736 - 15866564
Alignment:
Q  402 atagtaactcatagtagagtaaactagatttaacaaaagataatgaatgaatacaatagtgttcctatatatagagattagtttgagtaactaactccaa 501  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||    
T  15866736 atagtgactcataggagagtaaactagatttaacaaaagataatgaatgagtacaatagtgttcctaaatatagagattagtttgagtaactaactctaa 15866637  T
Q  502 ctaacttctaaccaagctactaattctagtttacctatcaactaactatagttgattattcatactctaataa 574  Q
    |||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15866636 ctaacttctacccaagctattaactctagtttacctatcaactaactatagttgattattcatactctaataa 15866564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 402 - 573
Target Start/End: Complemental strand, 33869402 - 33869231
Alignment:
Q  402 atagtaactcatagtagagtaaactagatttaacaaaagataatgaatgaatacaatagtgttcctatatatagagattagtttgagtaactaactccaa 501  Q
    ||||| |||||||| ||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  33869402 atagtgactcataggagagtaaactagatttaacaaaagatagtgaatgcgtacaatagtgttcctatatatagagattagtttaagtaactaactctaa 33869303  T
Q  502 ctaacttctaaccaagctactaattctagtttacctatcaactaactatagttgattattcatactctaata 573  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33869302 ctaacttctaaccaagctactaactctagtttacctatcaactaactatagttgattattcatactctaata 33869231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 402 - 573
Target Start/End: Complemental strand, 33866255 - 33866084
Alignment:
Q  402 atagtaactcatagtagagtaaactagatttaacaaaagataatgaatgaatacaatagtgttcctatatatagagattagtttgagtaactaactccaa 501  Q
    ||||| || ||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||    
T  33866255 atagtgacccataggagagtaaactagatttaacaaaagatagtgaatgagtacaatagtgttcctatatatagagattagtctgagtaactaactctaa 33866156  T
Q  502 ctaacttctaaccaagctactaattctagtttacctatcaactaactatagttgattattcatactctaata 573  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  33866155 ctaacttctaaccaagctactaactctagtttacctatcaactaactatagttgattattaatactctaata 33866084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 436 - 559
Target Start/End: Complemental strand, 5377000 - 5376876
Alignment:
Q  436 aaaagataatgaatgaatacaatagtgttcctatatata-gagattagtttgagtaactaactccaactaacttctaaccaagctactaattctagttta 534  Q
    |||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||    
T  5377000 aaaagatattgaatgagtacaatagtgttcctatatataagagattagtttgagtaactaactctaactaacttctaaccaaactactaactctagttta 5376901  T
Q  535 cctatcaactaactatagttgatta 559  Q
    | |||||||||||||||||||||||    
T  5376900 cttatcaactaactatagttgatta 5376876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 436 - 559
Target Start/End: Complemental strand, 5378855 - 5378731
Alignment:
Q  436 aaaagataatgaatgaatacaatagtgttcctatatata-gagattagtttgagtaactaactccaactaacttctaaccaagctactaattctagttta 534  Q
    |||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||    
T  5378855 aaaagatattgaatgagtacaatagtgttcctatatataagagattagtttgagtaactaactctaactaacttctaaccaaactactaactctagttta 5378756  T
Q  535 cctatcaactaactatagttgatta 559  Q
    | |||||||||||||||||||||||    
T  5378755 cttatcaactaactatagttgatta 5378731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 436 - 557
Target Start/End: Original strand, 1088762 - 1088883
Alignment:
Q  436 aaaagataatgaatgaatacaatagtgttcctatatatagagattagtttgagtaactaactccaactaacttctaaccaagctactaattctagtttac 535  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||| |||| |||||    
T  1088762 aaaagatgatgaatgagtacaatagtgttcctatatatagagattagtttgactaactaactctaactaacttctaacaaagctactaactctaatttac 1088861  T
Q  536 ctatcaactaactatagttgat 557  Q
     |||||||||||||||||||||    
T  1088862 ttatcaactaactatagttgat 1088883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 436 - 559
Target Start/End: Original strand, 19645409 - 19645532
Alignment:
Q  436 aaaagataatgaatgaatacaatagtgttcctatatatagagattagtttgagtaactaactccaactaacttctaaccaagctactaattctagtttac 535  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||  ||||| |||||||||||||||||| | ||||||||    
T  19645409 aaaagataatgaatgagtacaatagtgttcttatatatagagattagtttgagtaactacctctgactaatttctaaccaagctactaactttagtttac 19645508  T
Q  536 ctatcaactaactatagttgatta 559  Q
     ||||||||||||||| |||||||    
T  19645509 ttatcaactaactataattgatta 19645532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 436 - 574
Target Start/End: Complemental strand, 14611205 - 14611068
Alignment:
Q  436 aaaagataatgaatgaatacaatagtgttcctatatatagagattagtttgagtaactaactccaactaacttctaaccaagctactaattctagtttac 535  Q
    |||||||||||||   |||||  ||||||||||||||||||| |||||| | ||||||||||| || |||||  |||| |||||||||| |||| |||||    
T  14611205 aaaagataatgaaatgatacacgagtgttcctatatatagagtttagtt-gtgtaactaactctaaataactcttaacgaagctactaactctaatttac 14611107  T
Q  536 ctatcaactaactatagttgattattcatactctaataa 574  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  14611106 ctatcaactaaccatagttgattattcatactctaataa 14611068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 462 - 559
Target Start/End: Original strand, 15149180 - 15149277
Alignment:
Q  462 gttcctatatatagagattagtttgagtaactaactccaactaacttctaaccaagctactaattctagtttacctatcaactaactatagttgatta 559  Q
    ||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||| |  ||||||||| |||||||||||||||||||||||    
T  15149180 gttcctatatatagaaattaatttgagtaactaactctaactaacttctaaccaagctactgaccctagtttacttatcaactaactatagttgatta 15149277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 488 - 573
Target Start/End: Complemental strand, 32079980 - 32079895
Alignment:
Q  488 gtaactaactccaactaacttctaaccaagctactaattctagtttacctatcaactaactatagttgattattcatactctaata 573  Q
    ||||||||||| ||||||||  |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32079980 gtaactaactctaactaactcttaaccaagcttctaactctagtttacctatcaactaactatagttgattattcatactctaata 32079895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 453 - 531
Target Start/End: Complemental strand, 9415173 - 9415095
Alignment:
Q  453 tacaatagtgttcctatatatagagattagtttgagtaactaactccaactaacttctaaccaagctactaattctagt 531  Q
    ||||||||||||| ||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||| ||||||    
T  9415173 tacaatagtgttcttatatatagagattagtttcactaactaactctaactaacttctaaccaagctactaactctagt 9415095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 500 - 573
Target Start/End: Complemental strand, 14620569 - 14620496
Alignment:
Q  500 aactaacttctaaccaagctactaattctagtttacctatcaactaactatagttgattattcatactctaata 573  Q
    ||||||||  ||||||||||||||| | |||||||||||||||||||  |||||||||||||||||||||||||    
T  14620569 aactaactcttaaccaagctactaactgtagtttacctatcaactaatcatagttgattattcatactctaata 14620496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 436 - 559
Target Start/End: Original strand, 28884363 - 28884487
Alignment:
Q  436 aaaagataatgaatgaatacaat-agtgttcctatatatagagattagtttgagtaactaactccaactaacttctaaccaagctactaattctagttta 534  Q
    |||||||||||||||| |||||| | ||||||| |||||| |||||| ||  ||||||  |||| ||| ||||   ||| ||||| |||| ||||||| |    
T  28884363 aaaagataatgaatgagtacaatgattgttcctttatatacagattaattgaagtaaccgactctaaccaactataaacaaagcttctaactctagttaa 28884462  T
Q  535 cctatcaactaactatagttgatta 559  Q
    |||||||||||||||||| ||||||    
T  28884463 cctatcaactaactatagctgatta 28884487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 426 - 507
Target Start/End: Complemental strand, 14619055 - 14618975
Alignment:
Q  426 tagatttaacaaaagataatgaatgaatacaatagtgttcctatatatagagattagtttgagtaactaactccaactaact 507  Q
    ||||||| | |||||||||||||   |||||  ||||||||||||||||||| |||| ||| ||||||||||| ||||||||    
T  14619055 tagatttgataaaagataatgaaatgatacatgagtgttcctatatatagagtttag-ttgtgtaactaactctaactaact 14618975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 443
Target Start/End: Complemental strand, 24544774 - 24544733
Alignment:
Q  402 atagtaactcatagtagagtaaactagatttaacaaaagata 443  Q
    |||| |||||||||||||||||||||||||| | ||||||||    
T  24544774 atagaaactcatagtagagtaaactagatttgataaaagata 24544733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 148; Significance: 9e-78; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 402 - 573
Target Start/End: Complemental strand, 3284658 - 3284487
Alignment:
Q  402 atagtaactcatagtagagtaaactagatttaacaaaagataatgaatgaatacaatagtgttcctatatatagagattagtttgagtaactaactccaa 501  Q
    ||||| |||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  3284658 atagtgactcataggagagtaaactagatttaacaaaagatagtgaatgagtacaatagtgttcctatatatagagattagtttgagtaactaactctaa 3284559  T
Q  502 ctaacttctaaccaagctactaattctagtttacctatcaactaactatagttgattattcatactctaata 573  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3284558 ctaacttctaaccaagctactaactctagtttacctatcaactaactatagttgattattcatactctaata 3284487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 402 - 573
Target Start/End: Complemental strand, 9312185 - 9312014
Alignment:
Q  402 atagtaactcatagtagagtaaactagatttaacaaaagataatgaatgaatacaatagtgttcctatatatagagattagtttgagtaactaactccaa 501  Q
    ||||| |||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  9312185 atagtgactcatgggagagtaaactagatttaacaaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgagtaactaactctaa 9312086  T
Q  502 ctaacttctaaccaagctactaattctagtttacctatcaactaactatagttgattattcatactctaata 573  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9312085 ctaacttctaaccaagctactaactctagtttacctatcaactaactatagttgattattcatactctaata 9312014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 402 - 573
Target Start/End: Complemental strand, 3282957 - 3282786
Alignment:
Q  402 atagtaactcatagtagagtaaactagatttaacaaaagataatgaatgaatacaatagtgttcctatatatagagattagtttgagtaactaactccaa 501  Q
    ||||| ||| |||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  3282957 atagtgacttataggagagtaaactagatttaacaaaagatagtgaatgagtacaatagtgttcctatatatagagattagtttgagtaactaactctaa 3282858  T
Q  502 ctaacttctaaccaagctactaattctagtttacctatcaactaactatagttgattattcatactctaata 573  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3282857 ctaacttctaaccaagctactaactctagtttacctatcaactaactatagttgattattcatactctaata 3282786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 402 - 573
Target Start/End: Complemental strand, 9310568 - 9310397
Alignment:
Q  402 atagtaactcatagtagagtaaactagatttaacaaaagataatgaatgaatacaatagtgttcctatatatagagattagtttgagtaactaactccaa 501  Q
    ||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||| ||    
T  9310568 atagtgactcataggagagtaaattagatttaacaaaagataatgaatgagtacaatagtgttcctatatatagatattaatttgagtaactaactctaa 9310469  T
Q  502 ctaacttctaaccaagctactaattctagtttacctatcaactaactatagttgattattcatactctaata 573  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  9310468 ctaacttctaaccaagctactaactctagtttacttatcaactaactatagttgattattcatactctaata 9310397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 402 - 574
Target Start/End: Complemental strand, 902232 - 902061
Alignment:
Q  402 atagtaactcatagtagagtaaactagatttaacaaaagataatgaatgaatacaatagtgttcctatatatagagattagtttgagtaactaactccaa 501  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||   |||||  |||||||||||||| |||| ||| || | ||||||||||| ||    
T  902232 atagtgactcataggagagtaaactagatttaacaaaagataatgaaatgatacatgagtgttcctatatagagagtttaatt-gtgtaactaactctaa 902134  T
Q  502 ctaacttctaaccaagctactaattctagtttacctatcaactaactatagttgattattcatactctaataa 574  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| | ||||||    
T  902133 ctaacttctaaccaagctactaactctagtttacctatcaactaactatagatgattattcatattataataa 902061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 436 - 559
Target Start/End: Complemental strand, 17449433 - 17449310
Alignment:
Q  436 aaaagataatgaatgaatacaatagtgttcctatatatagagattagtttgagtaactaactccaactaacttctaaccaagctactaattctagtttac 535  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||  |||||||||    
T  17449433 aaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgagtaactaactctaactaacttctaacgaagctactaaccctagtttac 17449334  T
Q  536 ctatcaactaactatagttgatta 559  Q
     |||||||||||||||||||||||    
T  17449333 ttatcaactaactatagttgatta 17449310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 436 - 559
Target Start/End: Original strand, 16808688 - 16808811
Alignment:
Q  436 aaaagataatgaatgaatacaatagtgttcctatatatagagattagtttgagtaactaactccaactaacttctaaccaagctactaattctagtttac 535  Q
    ||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||    
T  16808688 aaaagatgatgaatgagtacaatagtgttcatatatatagagattagtttgagtaactaactctaactaacttctaaccaaactactaactctagtttac 16808787  T
Q  536 ctatcaactaactatagttgatta 559  Q
     |||||||||||||||||||||||    
T  16808788 ttatcaactaactatagttgatta 16808811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 467 - 573
Target Start/End: Original strand, 37664695 - 37664801
Alignment:
Q  467 tatatatagagattagtttgagtaactaactccaactaacttctaaccaagctactaattctagtttacctatcaactaactatagttgattattcatac 566  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  37664695 tatatatagagattagtttgaataactaactctaactaacttctaaccaagctactaactctagtttacctatcaactaactatagttgattattcatac 37664794  T
Q  567 tctaata 573  Q
    |||||||    
T  37664795 tctaata 37664801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 467 - 573
Target Start/End: Original strand, 37674417 - 37674523
Alignment:
Q  467 tatatatagagattagtttgagtaactaactccaactaacttctaaccaagctactaattctagtttacctatcaactaactatagttgattattcatac 566  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  37674417 tatatatagagattagtttgaataactaactctaactaacttctaaccaagctactaactctagtttacctatcaactaactatagttgattattcatac 37674516  T
Q  567 tctaata 573  Q
    |||||||    
T  37674517 tctaata 37674523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 467 - 573
Target Start/End: Complemental strand, 37702277 - 37702171
Alignment:
Q  467 tatatatagagattagtttgagtaactaactccaactaacttctaaccaagctactaattctagtttacctatcaactaactatagttgattattcatac 566  Q
    ||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  37702277 tatatatagagattagtttgaataactaactctaactaatttctaaccaagctactaactctagtttacctatcaactaactatagttgattattcatac 37702178  T
Q  567 tctaata 573  Q
    |||||||    
T  37702177 tctaata 37702171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 500 - 573
Target Start/End: Original strand, 5924947 - 5925020
Alignment:
Q  500 aactaacttctaaccaagctactaattctagtttacctatcaactaactatagttgattattcatactctaata 573  Q
    ||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  5924947 aactaacttctaaccaaactactaactctaatttacctatcaactaactatagttgattattcatactctaata 5925020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 436 - 512
Target Start/End: Complemental strand, 48941722 - 48941646
Alignment:
Q  436 aaaagataatgaatgaatacaatagtgttcctatatatagagattagtttgagtaactaactccaactaacttctaa 512  Q
    |||||||| ||||||| ||||||||||||  ||| |||||||||||||||||||||| ||||| |||||||||||||    
T  48941722 aaaagatactgaatgagtacaatagtgtttatatgtatagagattagtttgagtaaccaactctaactaacttctaa 48941646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 508 - 559
Target Start/End: Complemental strand, 48940726 - 48940675
Alignment:
Q  508 tctaaccaagctactaattctagtttacctatcaactaactatagttgatta 559  Q
    ||||||||| ||||||| |||||||||| |||||||||||||||||||||||    
T  48940726 tctaaccaaactactaactctagtttacttatcaactaactatagttgatta 48940675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 67 - 139
Target Start/End: Original strand, 14534755 - 14534827
Alignment:
Q  67 attattgccactccatgaagataacaaagcttggctttggttatcaagactcgctttccacttcaacaaagca 139  Q
    |||||||||| |||||||||| | |||||| | ||| ||||| ||||| || |||||||||||||||| ||||    
T  14534755 attattgccaatccatgaagagagcaaagcattgctatggttgtcaaggcttgctttccacttcaacagagca 14534827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 520 - 567
Target Start/End: Complemental strand, 36580600 - 36580553
Alignment:
Q  520 actaattctagtttacctatcaactaactatagttgattattcatact 567  Q
    ||||| ||||||| |||||||||||| ||||||| |||||||||||||    
T  36580600 actaactctagttaacctatcaactatctatagtagattattcatact 36580553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 140; Significance: 5e-73; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 402 - 573
Target Start/End: Complemental strand, 6382 - 6211
Alignment:
Q  402 atagtaactcatagtagagtaaactagatttaacaaaagataatgaatgaatacaatagtgttcctatatatagagattagtttgagtaactaactccaa 501  Q
    ||||| |||||||| |||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  6382 atagtgactcataggagagtaaacttgatttaacaaaagatagtgaatgagtacaatagtgttcctatatatagagattagtttgagtaactaactctaa 6283  T
Q  502 ctaacttctaaccaagctactaattctagtttacctatcaactaactatagttgattattcatactctaata 573  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6282 ctaacttctaaccaagctactaactctagtttacctatcaattaactatagttgattattcatactctaata 6211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 137; Significance: 3e-71; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 402 - 574
Target Start/End: Original strand, 39787134 - 39787306
Alignment:
Q  402 atagtaactcatagtagagtaaactagatttaacaaaagataatgaatgaatacaatagtgttcctatatatagagattagtttgagtaactaactccaa 501  Q
    ||||| ||| |||| ||||||||||||||||||||||||| | ||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||    
T  39787134 atagtgacttataggagagtaaactagatttaacaaaagacagtgaatgagtaaaatagtgttcctatatatagagattagtttgagtaactaactctaa 39787233  T
Q  502 ctaacttctaaccaagctactaattctagtttacctatcaactaactatagttgattattcatactctaataa 574  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39787234 ctaacttctaaccaagctactaactctagtttacctatcaactaactatagttgattattcatactctaataa 39787306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 436 - 567
Target Start/End: Original strand, 25076224 - 25076356
Alignment:
Q  436 aaaagataatgaatgaatacaatagt-gttcctatatatagagattagtttgagtaactaactccaactaacttctaaccaagctactaattctagttta 534  Q
    ||||||| ||||| || |||||| || |||||||||| |||||||||||| || | ||| |||| ||||||||   |||   ||| |||||||||||| |    
T  25076224 aaaagatgatgaaagagtacaattgttgttcctatatctagagattagttggaatgacttactctaactaactctaaacttggcttctaattctagttaa 25076323  T
Q  535 cctatcaactaactatagttgattattcatact 567  Q
    |||||||||||||||||||||||||||||||||    
T  25076324 cctatcaactaactatagttgattattcatact 25076356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 436 - 567
Target Start/End: Original strand, 25134193 - 25134325
Alignment:
Q  436 aaaagataatgaatgaatacaatagt-gttcctatatatagagattagtttgagtaactaactccaactaacttctaaccaagctactaattctagttta 534  Q
    ||||||| ||||| || |||||| || |||||||||| |||||||||||| || | ||| |||| ||||||||   |||   ||| |||||||||||| |    
T  25134193 aaaagatgatgaaagagtacaattgttgttcctatatctagagattagttggaatgacttactctaactaactctaaacttggcttctaattctagttaa 25134292  T
Q  535 cctatcaactaactatagttgattattcatact 567  Q
    |||||||||||||||||||||||||||||||||    
T  25134293 cctatcaactaactatagttgattattcatact 25134325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 459 - 503
Target Start/End: Complemental strand, 6569932 - 6569888
Alignment:
Q  459 agtgttcctatatatagagattagtttgagtaactaactccaact 503  Q
    |||||||||||||||||||||||||| || |||||||||| ||||    
T  6569932 agtgttcctatatatagagattagttggactaactaactctaact 6569888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 4e-61; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 426 - 573
Target Start/End: Original strand, 3529246 - 3529393
Alignment:
Q  426 tagatttaacaaaagataatgaatgaatacaatagtgttcctatatatagagattagtttgagtaactaactccaactaacttctaaccaagctactaat 525  Q
    ||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  3529246 tagatttgataaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgagtaactaactctaactaacttctaaccaagctactaac 3529345  T
Q  526 tctagtttacctatcaactaactatagttgattattcatactctaata 573  Q
    | |||||||||||||||||||||| |||||||||||||||||||||||    
T  3529346 tttagtttacctatcaactaactacagttgattattcatactctaata 3529393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 426 - 574
Target Start/End: Complemental strand, 23985906 - 23985758
Alignment:
Q  426 tagatttaacaaaagataatgaatgaatacaatagtgttcctatatatagagattagtttgagtaactaactccaactaacttctaaccaagctactaat 525  Q
    ||||||| | |||||||  ||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||     
T  23985906 tagatttgataaaagatggtgaatgagtacaatagtgttcctatatatagagattagtttgaataactaactctaactaacttctaaccaagctactaac 23985807  T
Q  526 tctagtttacctatcaactaactatagttgattattcatactctaataa 574  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23985806 tctagtttacctatcaactaactatagttgattattcatactctaataa 23985758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 436 - 559
Target Start/End: Complemental strand, 7040483 - 7040360
Alignment:
Q  436 aaaagataatgaatgaatacaatagtgttcctatatatagagattagtttgagtaactaactccaactaacttctaaccaagctactaattctagtttac 535  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||    
T  7040483 aaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttac 7040384  T
Q  536 ctatcaactaactatagttgatta 559  Q
     |||||||||||||||||||||||    
T  7040383 ttatcaactaactatagttgatta 7040360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 436 - 559
Target Start/End: Original strand, 23564784 - 23564907
Alignment:
Q  436 aaaagataatgaatgaatacaatagtgttcctatatatagagattagtttgagtaactaactccaactaacttctaaccaagctactaattctagtttac 535  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||    
T  23564784 aaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttac 23564883  T
Q  536 ctatcaactaactatagttgatta 559  Q
     |||||||||||||||||||||||    
T  23564884 ttatcaactaactatagttgatta 23564907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 436 - 559
Target Start/End: Original strand, 23566458 - 23566581
Alignment:
Q  436 aaaagataatgaatgaatacaatagtgttcctatatatagagattagtttgagtaactaactccaactaacttctaaccaagctactaattctagtttac 535  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||    
T  23566458 aaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaagtctagtttac 23566557  T
Q  536 ctatcaactaactatagttgatta 559  Q
     |||||||||||||||||||||||    
T  23566558 ttatcaactaactatagttgatta 23566581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 436 - 559
Target Start/End: Complemental strand, 52520723 - 52520600
Alignment:
Q  436 aaaagataatgaatgaatacaatagtgttcctatatatagagattagtttgagtaactaactccaactaacttctaaccaagctactaattctagtttac 535  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||    
T  52520723 aaaagatgatgaatgagtacaatagtgttcctatatatagagattagtttgagtaactaactctaactaacttctaaccaaactactaactctagtttac 52520624  T
Q  536 ctatcaactaactatagttgatta 559  Q
     |||||||||||||||||||||||    
T  52520623 ttatcaactaactatagttgatta 52520600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 436 - 559
Target Start/End: Complemental strand, 18656230 - 18656107
Alignment:
Q  436 aaaagataatgaatgaatacaatagtgttcctatatatagagattagtttgagtaactaactccaactaacttctaaccaagctactaattctagtttac 535  Q
    ||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||     
T  18656230 aaaagatgatgaatgagtacaatagttttcctatatatagagattagtttgagtaactaactctaactaacttctaactaagctactaactctagtttag 18656131  T
Q  536 ctatcaactaactatagttgatta 559  Q
    ||||||||||||||||||||||||    
T  18656130 ctatcaactaactatagttgatta 18656107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 436 - 559
Target Start/End: Complemental strand, 52518881 - 52518758
Alignment:
Q  436 aaaagataatgaatgaatacaatagtgttcctatatatagagattagtttgagtaactaactccaactaacttctaaccaagctactaattctagtttac 535  Q
    ||||||| |||| ||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||    
T  52518881 aaaagatgatgattgagtacaacagtgttcctatatatagagattagtttgagtaactaactctaactaacttctaaccaaactactaactctagtttac 52518782  T
Q  536 ctatcaactaactatagttgatta 559  Q
     |||||||||||||||||||||||    
T  52518781 ttatcaactaactatagttgatta 52518758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 459 - 573
Target Start/End: Original strand, 52545234 - 52545347
Alignment:
Q  459 agtgttcctatatatagagattagtttgagtaactaactccaactaacttctaaccaagctactaattctagtttacctatcaactaactatagttgatt 558  Q
    ||||||||||||||||||| |||||| | ||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  52545234 agtgttcctatatatagagtttagtt-gtgtaactaactctaaccaacttctaaccaagctactaactctagtttacctatcaactaactatagttgatt 52545332  T
Q  559 attcatactctaata 573  Q
    |||||||||||||||    
T  52545333 attcatactctaata 52545347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 436 - 532
Target Start/End: Complemental strand, 54296550 - 54296454
Alignment:
Q  436 aaaagataatgaatgaatacaatagtgttcctatatatagagattagtttgagtaactaactccaactaacttctaaccaagctactaattctagtt 532  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  54296550 aaaagatcatgaatgagtacaatagtgttcctatatatagagattagtttgagtaactaactctaactaacttctaaccaagctactaactctagtt 54296454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 459 - 573
Target Start/End: Complemental strand, 24807522 - 24807409
Alignment:
Q  459 agtgttcctatatatagagattagtttgagtaactaactccaactaacttctaaccaagctactaattctagtttacctatcaactaactatagttgatt 558  Q
    ||||||||||||||||||  |||||| | |||||||||||   ||||||  |||||||||| |||| |||| ||||||||||||||||||||||||||||    
T  24807522 agtgttcctatatatagattttagtt-gtgtaactaactcttcctaactcttaaccaagcttctaactctaatttacctatcaactaactatagttgatt 24807424  T
Q  559 attcatactctaata 573  Q
    |||||||||||||||    
T  24807423 attcatactctaata 24807409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 467 - 559
Target Start/End: Original strand, 3274580 - 3274672
Alignment:
Q  467 tatatatagagattagtttgagtaactaactccaactaacttctaaccaagctactaattctagtttacctatcaactaactatagttgatta 559  Q
    |||||||||| |||| ||||||||| |||||| ||||||||||||| ||||| ||||| ||| ||||||||||||||||| ||||||||||||    
T  3274580 tatatatagaaattaatttgagtaattaactctaactaacttctaatcaagccactaactcttgtttacctatcaactaattatagttgatta 3274672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 509 - 573
Target Start/End: Original strand, 18395816 - 18395880
Alignment:
Q  509 ctaaccaagctactaattctagtttacctatcaactaactatagttgattattcatactctaata 573  Q
    |||||||| ||| ||| | |||||||||||||||||||||||||||||||||||||||| |||||    
T  18395816 ctaaccaacctattaactatagtttacctatcaactaactatagttgattattcatactataata 18395880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 526 - 573
Target Start/End: Complemental strand, 18320110 - 18320063
Alignment:
Q  526 tctagtttacctatcaactaactatagttgattattcatactctaata 573  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||    
T  18320110 tctagtttacctatcaattaactatagttgattattcatactgtaata 18320063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 526 - 573
Target Start/End: Original strand, 18398573 - 18398620
Alignment:
Q  526 tctagtttacctatcaactaactatagttgattattcatactctaata 573  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||    
T  18398573 tctagtttacctatcaattaactatagttgattattcatactgtaata 18398620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 115; Significance: 4e-58; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 436 - 582
Target Start/End: Complemental strand, 58908 - 58762
Alignment:
Q  436 aaaagataatgaatgaatacaatagtgttcctatatatagagattagtttgagtaactaactccaactaacttctaaccaagctactaattctagtttac 535  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  58908 aaaagatgatgaatgagtacaatagtgttcctatatatagagattagtttgagtaactaactctaactaacttctaaccaagctactaactctagtttac 58809  T
Q  536 ctatcaactaactatagttgattattcatactctaataaaaatcatg 582  Q
    |||  ||||||||||||||||||||||||| ||||||| ||||||||    
T  58808 ctactaactaactatagttgattattcatattctaatacaaatcatg 58762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 106; Significance: 1e-52; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 20 - 277
Target Start/End: Original strand, 19644 - 19907
Alignment:
Q  20 acagacatggaatcttcatcacacgtgattccaaaccagttgcatgaattattgccactccatgaagataacaaagcttggctttggttatcaagactcg 119  Q
    ||||||| |||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||| |||||||| |    
T  19644 acagacaaggaatcttcaccacatgtgattccaaaccagttgcatgagttattgccactccatgaagatagcaaagtttggctttggttgtcaagacttg 19743  T
Q  120 ctttccacttcaacaaagcacttgtttctctactttgtaaagtggaagaagtagatgcaattgttagggaaaaaccaacaattgaagaagaag------- 212  Q
    || ||||||||||||||||||||| |||| | ||||| | |||||| ||||  |  | ||| || | |||| ||||||  |  ||||||||||           
T  19744 ctatccacttcaacaaagcacttgcttctttgctttgaacagtggatgaagctgcagaaatagtaaaggaagaaccaaacacagaagaagaagaagaaga 19843  T
Q  213 -ggttgttagttatgagtggacaaaagtacattgagaaaaacagccaaaagtgtacacacttcatg 277  Q
     ||  |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  19844 agg--gttagttatgagtgtacaaaagtacattgaggaaaacagccaaaagtgtacacacttcatg 19907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 2e-51; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 436 - 559
Target Start/End: Complemental strand, 30224352 - 30224229
Alignment:
Q  436 aaaagataatgaatgaatacaatagtgttcctatatatagagattagtttgagtaactaactccaactaacttctaaccaagctactaattctagtttac 535  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||    
T  30224352 aaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttac 30224253  T
Q  536 ctatcaactaactatagttgatta 559  Q
     |||||||||||||||||||||||    
T  30224252 ttatcaactaactatagttgatta 30224229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 436 - 559
Target Start/End: Complemental strand, 5567548 - 5567425
Alignment:
Q  436 aaaagataatgaatgaatacaatagtgttcctatatatagagattagtttgagtaactaactccaactaacttctaaccaagctactaattctagtttac 535  Q
    ||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||     
T  5567548 aaaagatgatgaatgagtacaatagttttcctatatatagagattagtttgagtaactaactccaactaacttctaactaagctactaactctagtttag 5567449  T
Q  536 ctatcaactaactatagttgatta 559  Q
    ||||||||||||||||||||||||    
T  5567448 ctatcaactaactatagttgatta 5567425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 436 - 559
Target Start/End: Original strand, 3375532 - 3375655
Alignment:
Q  436 aaaagataatgaatgaatacaatagtgttcctatatatagagattagtttgagtaactaactccaactaacttctaaccaagctactaattctagtttac 535  Q
    |||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||    
T  3375532 aaaagataatgaatgggtacaatagagttcctatatatagagattagtttgagtaactaactctaactaacttctaaccaagctactaaccctagtttac 3375631  T
Q  536 ctatcaactaactatagttgatta 559  Q
     |||||||||||||||||||||||    
T  3375632 ttatcaactaactatagttgatta 3375655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 436 - 559
Target Start/End: Complemental strand, 6428862 - 6428739
Alignment:
Q  436 aaaagataatgaatgaatacaatagtgttcctatatatagagattagtttgagtaactaactccaactaacttctaaccaagctactaattctagtttac 535  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||| ||| |||||| ||||||||||    
T  6428862 aaaagatgatgaatgattacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttttaactaaggtactaactctagtttac 6428763  T
Q  536 ctatcaactaactatagttgatta 559  Q
     |||||||||| ||||||||||||    
T  6428762 ttatcaactaattatagttgatta 6428739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 436 - 559
Target Start/End: Complemental strand, 25249128 - 25249002
Alignment:
Q  436 aaaagataatgaatgaatacaatagtgttcctatatatagagattagtttgagtaactaactccaactaacttctaaccaagctactaattctagtttac 535  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||| ||||||||||    
T  25249128 aaaagatcatgaatgagtacaatagtgttcctatatatagagattagtttgagtaactacctttaactaacttctaaccaagctactaactctagtttac 25249029  T
Q  536 ---ctatcaactaactatagttgatta 559  Q
        |||||| ||||||||||||||||    
T  25249028 ttattatcaattaactatagttgatta 25249002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 444 - 559
Target Start/End: Original strand, 3379231 - 3379346
Alignment:
Q  444 atgaatgaatacaatagtgttcctatatatagagattagtttgagtaactaactccaactaacttctaaccaagctactaattctagtttacctatcaac 543  Q
    |||||||| ||||||||| |||||  ||||||||||||||||||||||||||||| |||||||||||||| || ||||||| ||||||||| ||||||||    
T  3379231 atgaatgagtacaatagttttccttaatatagagattagtttgagtaactaactctaactaacttctaactaaactactaactctagtttaactatcaac 3379330  T
Q  544 taactatagttgatta 559  Q
    ||||||||||||||||    
T  3379331 taactatagttgatta 3379346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 436 - 559
Target Start/End: Original strand, 31032112 - 31032231
Alignment:
Q  436 aaaagataatgaatgaatacaatagtgttcctatatatagagattagtttgagtaactaactccaactaacttctaaccaagctactaattctagtttac 535  Q
    ||||||| |||||||| |  | || ||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||  |||||||||    
T  31032112 aaaagatcatgaatgagtgtagtaatgttcctatatatagagattagtttgagtaactaactc----taacttctaaccaagctactaaccctagtttac 31032207  T
Q  536 ctatcaactaactatagttgatta 559  Q
     |||||||||||||||||||||||    
T  31032208 ttatcaactaactatagttgatta 31032231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 489 - 573
Target Start/End: Complemental strand, 14935646 - 14935562
Alignment:
Q  489 taactaactccaactaacttctaaccaagctactaattctagtttacctatcaactaactatagttgattattcatactctaata 573  Q
    ||||||| || |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14935646 taactaattctaactaacttctaaccaagttactaactctagtttacctatcaactaactatagttgattattcatactctaata 14935562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 436 - 530
Target Start/End: Original strand, 36535941 - 36536035
Alignment:
Q  436 aaaagataatgaatgaatacaatagtgttcctatatatagagattagtttgagtaactaactccaactaacttctaaccaagctactaattctag 530  Q
    ||||||| |||||||| ||||| ||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  36535941 aaaagatgatgaatgagtacaacagtattgctatatatagagattagtttgagtaactaactctaactaacttctaaccaagctactaactctag 36536035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 526 - 562
Target Start/End: Complemental strand, 4676083 - 4676048
Alignment:
Q  526 tctagtttacctatcaactaactatagttgattattc 562  Q
    ||||||||||| |||||||||||||||||||||||||    
T  4676083 tctagtttacc-atcaactaactatagttgattattc 4676048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 2e-51; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 436 - 559
Target Start/End: Complemental strand, 29758242 - 29758119
Alignment:
Q  436 aaaagataatgaatgaatacaatagtgttcctatatatagagattagtttgagtaactaactccaactaacttctaaccaagctactaattctagtttac 535  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||    
T  29758242 aaaagataatgaatgagtacaatagtgttcctatatatagagattagtttgagtaactacctctaactaacttctaaccaagctactaactctagtttac 29758143  T
Q  536 ctatcaactaactatagttgatta 559  Q
     |||||||||||||||||||||||    
T  29758142 ttatcaactaactatagttgatta 29758119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 402 - 442
Target Start/End: Complemental strand, 20957597 - 20957557
Alignment:
Q  402 atagtaactcatagtagagtaaactagatttaacaaaagat 442  Q
    ||||| ||||||||||||||||||||||||| |||||||||    
T  20957597 atagtgactcatagtagagtaaactagatttgacaaaagat 20957557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 402 - 442
Target Start/End: Complemental strand, 20957769 - 20957729
Alignment:
Q  402 atagtaactcatagtagagtaaactagatttaacaaaagat 442  Q
    ||||| ||||||||||||||||||||||||| |||||||||    
T  20957769 atagtgactcatagtagagtaaactagatttgacaaaagat 20957729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 508 - 566
Target Start/End: Complemental strand, 18739722 - 18739664
Alignment:
Q  508 tctaaccaagctactaattctagtttacctatcaactaactatagttgattattcatac 566  Q
    ||||||||  ||||||| ||||||| || ||||||||||||||| ||||||| ||||||    
T  18739722 tctaaccagactactaactctagttaacgtatcaactaactataattgattaatcatac 18739664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 436 - 486
Target Start/End: Original strand, 20516053 - 20516103
Alignment:
Q  436 aaaagataatgaatgaatacaatagtgttcctatatatagagattagtttg 486  Q
    |||| ||||||||||| ||||||||||||| |||||||| | |||||||||    
T  20516053 aaaaaataatgaatgagtacaatagtgttcttatatataaaaattagtttg 20516103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 6e-45; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 436 - 559
Target Start/End: Original strand, 17402891 - 17403015
Alignment:
Q  436 aaaagataatgaatgaatacaatagtgttcctatatata-gagattagtttgagtaactaactccaactaacttctaaccaagctactaattctagttta 534  Q
    |||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||    
T  17402891 aaaagatattgaatgagtacaatagtgttcctatatataagagattagtttgagtaactaactctaactaacttctaaccaaactactaactctagttta 17402990  T
Q  535 cctatcaactaactatagttgatta 559  Q
    | |||||||||||||||||||||||    
T  17402991 cttatcaactaactatagttgatta 17403015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 436 - 551
Target Start/End: Complemental strand, 6789742 - 6789627
Alignment:
Q  436 aaaagataatgaatgaatacaatagtgttcctatatatagagattagtttgagtaactaactccaactaacttctaaccaagctactaattctagtttac 535  Q
    |||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||    
T  6789742 aaaagatagtgaatgagtacaatagtattcctatatatagagattagtttgagtaactaactctaactaacttctaaccaagctactaactctagttcac 6789643  T
Q  536 ctatcaactaactata 551  Q
     |||| ||||||||||    
T  6789642 ttatccactaactata 6789627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 436 - 514
Target Start/End: Complemental strand, 1140123 - 1140045
Alignment:
Q  436 aaaagataatgaatgaatacaatagtgttcctatatatagagattagtttgagtaactaactccaactaacttctaacc 514  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1140123 aaaagatgatgaatgagtacaatagtgttcctatatatagagattagtttgagtaactaactctaactaacttctaacc 1140045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 459 - 559
Target Start/End: Complemental strand, 20302725 - 20302625
Alignment:
Q  459 agtgttcctatatatagagattagtttgagtaactaactccaactaacttctaaccaagctactaattctagtttacctatcaact-aactatagttgat 557  Q
    ||||||| ||||||||||||||||||||| |||| ||||  |||| |||| ||||||| ||||||| ||||||| |||| |||||| |||||||||| ||    
T  20302725 agtgttcttatatatagagattagtttgaataaccaactataacttactt-taaccaatctactaagtctagttaacctttcaactaaactatagtttat 20302627  T
Q  558 ta 559  Q
    ||    
T  20302626 ta 20302625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 467 - 559
Target Start/End: Complemental strand, 20327259 - 20327167
Alignment:
Q  467 tatatatagagattagtttgagtaactaactccaactaacttctaaccaagctactaattctagtttacctatcaact-aactatagttgatta 559  Q
    |||||| ||||||||||||||||||| ||||  |||| |||| ||||||||||||||| ||||||| |||| |||||| |||||||||| ||||    
T  20327259 tatatagagagattagtttgagtaaccaactataacttactt-taaccaagctactaagtctagttaacctttcaactaaactatagtttatta 20327167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 577
Target Start/End: Original strand, 17579280 - 17579321
Alignment:
Q  536 ctatcaactaactatagttgattattcatactctaataaaaa 577  Q
    |||||||||||||||||||||||||||||  | |||||||||    
T  17579280 ctatcaactaactatagttgattattcatcttgtaataaaaa 17579321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 459 - 516
Target Start/End: Complemental strand, 41874497 - 41874441
Alignment:
Q  459 agtgttcctatatatagagattagtttgagtaactaactccaactaacttctaaccaa 516  Q
    ||||||||||||||||||| |||| ||| ||||||||||| ||||||||  |||||||    
T  41874497 agtgttcctatatatagagtttag-ttgtgtaactaactctaactaactcttaaccaa 41874441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 527 - 559
Target Start/End: Complemental strand, 1140044 - 1140012
Alignment:
Q  527 ctagtttacctatcaactaactatagttgatta 559  Q
    ||||||||| |||||||||||||||||||||||    
T  1140044 ctagtttacttatcaactaactatagttgatta 1140012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 459 - 574
Target Start/End: Complemental strand, 39243 - 39129
Alignment:
Q  459 agtgttcctatatatagagattagtttgagtaactaactccaactaacttctaaccaagctactaattctagtttacctatcaactaactatagttgatt 558  Q
    ||||||||||||||||||| |||||| | ||||||||||  ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  39243 agtgttcctatatatagagtttagtt-gtgtaactaactttaactaacttctaaccaagctactaactctagtttacttatcaactaactatagttgatt 39145  T
Q  559 attcatactctaataa 574  Q
    ||||||||||||||||    
T  39144 attcatactctaataa 39129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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