View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17991_high_34 (Length: 330)
Name: NF17991_high_34
Description: NF17991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17991_high_34 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 15 - 330
Target Start/End: Original strand, 18109649 - 18109964
Alignment:
| Q |
15 |
tatattattgttttgattttgtaggttttacaaaggatcaaatgaagattgagttgctggacatgtcacgaaagttgaggattacaggtgaacgaccgat |
114 |
Q |
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| T |
18109649 |
tatattattgttttgattttgtaggttttacaaaggatcaaatgaagattgagttgctggacatgtcacgaaagttgaggattacaggtgaacgaccgat |
18109748 |
T |
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| Q |
115 |
tccaggtaacaaatggagaaaatttgaccaaacatattctgttccagaaaatagtgaggcagagaaacttgaagccaaatttgaacaaggtactctcatc |
214 |
Q |
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| T |
18109749 |
tccaggtaacaaatggagaaaatttgaccaaacatatcctgttccagaaaatagtgaggcagagaaacttgaagccaaatttgaacaaggtactctcatc |
18109848 |
T |
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| Q |
215 |
cttaaaatgcaaaagaagccaatttcacaatcatcacaagtagctcctcaacaagaagtagaaaaaagtccttcaaataataaagatttagatgaagcaa |
314 |
Q |
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| T |
18109849 |
cttaaaatgcaaaagaagccaatttcacaatcatcacaagtagctcctcaacaagaagtagaaaaaagtccttcaaataataaagatttagatgaagcaa |
18109948 |
T |
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| Q |
315 |
aggttgaaaaagctca |
330 |
Q |
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| T |
18109949 |
aggttgaaaaagctca |
18109964 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 213
Target Start/End: Complemental strand, 1111020 - 1110929
Alignment:
| Q |
122 |
aacaaatggagaaaatttgaccaaacatattctgttccagaaaatagtgaggcagagaaacttgaagccaaatttgaacaaggtactctcat |
213 |
Q |
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| T |
1111020 |
aacaaatggagcctatttgaccaatcatatcctgttccagaaaattgtgaggtggaaaaacttcaaggcaagtttgaaaatggaactctcat |
1110929 |
T |
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