View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17991_high_48 (Length: 287)

Name: NF17991_high_48
Description: NF17991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17991_high_48
NF17991_high_48
[»] chr4 (5 HSPs)
chr4 (20-272)||(47731536-47731792)
chr4 (23-269)||(11376308-11376553)
chr4 (20-252)||(26334014-26334245)
chr4 (23-272)||(50822991-50823237)
chr4 (24-156)||(12271172-12271303)
[»] chr5 (5 HSPs)
chr5 (23-250)||(11052149-11052375)
chr5 (23-259)||(24873864-24874099)
chr5 (28-244)||(11106549-11106764)
chr5 (131-216)||(30986943-30987028)
chr5 (181-249)||(18055614-18055682)
[»] chr2 (3 HSPs)
chr2 (66-270)||(43708934-43709137)
chr2 (23-70)||(43706712-43706759)
chr2 (187-216)||(564570-564599)
[»] chr7 (1 HSPs)
chr7 (26-251)||(9083126-9083348)
[»] chr1 (1 HSPs)
chr1 (59-164)||(35532701-35532805)
[»] chr8 (1 HSPs)
chr8 (131-239)||(28697161-28697269)
[»] chr3 (1 HSPs)
chr3 (133-174)||(34295602-34295643)


Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 272
Target Start/End: Complemental strand, 47731792 - 47731536
Alignment:
Q  20 attagtaatacccatttctttggccaacaggagacccttatagatgacataaagttcaacatacaagatatcaggtgaattttagatgtatcca-----g 114  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||| || |||||||||||||||||     |    
T  47731792 attagtaatacccatttctttggccaacatgagacccttatagatgacataaagctcaacgtacaagatatcaagtaaattttagatgtatccaatccag 47731693  T
Q  115 aaaagcctgataagtaaaaaacctgcatcatttcttaaaattcctccataacctgctcttataagagatctaaggcaacttccatcaacattaaggatga 214  Q
     ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  47731692 taaagcctgataag-aaaaaacctgcatcatttcttaaaattcctccataacctgctcttataggagatctaaggcaacttccatcaacattaaggatga 47731594  T
Q  215 cacaagaatgattattgctgttccatttgatgaattgggcttcatgagtagtactaga 272  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  47731593 cacaagaatgattattgttgttccatttgatgaattgggcttcatgagtagtactaga 47731536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 23 - 269
Target Start/End: Original strand, 11376308 - 11376553
Alignment:
Q  23 agtaatacccatttctttggccaacaggagacccttatagatgacataaagttcaacatacaagatatcaggtgaattttagatgtatccagaaaagcct 122  Q
    ||||||||||||||||||||||||||  ||||||||||||||| |||| || ||| ||||||||||||||| ||||||||  ||||||| ||||||||||    
T  11376308 agtaatacccatttctttggccaacaaaagacccttatagatggcatagagctcagcatacaagatatcagatgaattttgaatgtatctagaaaagcct 11376407  T
Q  123 gataagtaaaaaacctgcatcatttcttaaaattcctccataacctgctcttataagagatctaaggcaacttccatcaacattaaggatgacacaagaa 222  Q
    || ||| ||||||||||||| |||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||| ||    
T  11376408 gacaag-aaaaaacctgcataatttcttaaaattcttccataacctgctcttataggagatccaaggcaacttccatcaacattaacgatgacacaaaaa 11376506  T
Q  223 tgattattgctgttccatttgatgaattgggcttcatgagtagtact 269  Q
    ||||||||| || |||| |||||||||| | |||||| | |||||||    
T  11376507 tgattattgttgctccacttgatgaatttgtcttcatcaatagtact 11376553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 20 - 252
Target Start/End: Original strand, 26334014 - 26334245
Alignment:
Q  20 attagtaatacccatttctttggccaacaggagacccttatagatgacataaagttcaacatacaagatatcaggtgaattttagatgtatccagaaaag 119  Q
    ||||||||||||||||||||||||||||| || ||||||||||||| |||||||  |||||||||||||||||| ||||||||  |||||  ||||||||    
T  26334014 attagtaatacccatttctttggccaacaagatacccttatagatggcataaagcccaacatacaagatatcagatgaattttgaatgtacacagaaaag 26334113  T
Q  120 cctgataagtaaaaaacctgcatcatttcttaaaattcctccataacctgctcttataagagatctaaggcaacttccatcaacattaaggatgacacaa 219  Q
     |||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||| |||||||||||    
T  26334114 tctgacaag-aaaaaacctgcatcatttcttaaaattcctccataaccagctcttataagagatccaaggcaacttcaatcaacattacggatgacacaa 26334212  T
Q  220 gaatgattattgctgttccatttgatgaattgg 252  Q
     || |||| ||| ||||||| ||||||||||||    
T  26334213 caaagattgttgttgttccagttgatgaattgg 26334245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 23 - 272
Target Start/End: Original strand, 50822991 - 50823237
Alignment:
Q  23 agtaatacccatttctttggccaacaggagacccttatagatgacataaagttcaacatacaagatatcaggtgaattttagatgtatccagaaaagcct 122  Q
    |||||||| ||||||||||||||||| |||||||||||||||| ||||||| ||| ||||||||||  ||  ||||||||  ||||||||||||||||||    
T  50822991 agtaatactcatttctttggccaacaagagacccttatagatggcataaagctcatcatacaagat--caaatgaattttgaatgtatccagaaaagcct 50823088  T
Q  123 gataagtaaaaaacctgcatcatttcttaaaattcctccataacctgctcttataagagatctaaggcaacttccatcaacattaaggatgacacaagaa 222  Q
    || |||||||| |||||||| ||| ||||||||||||||||||||  ||||| || |||||| ||||||||||||||||||||| || ||||||||||||    
T  50823089 gacaagtaaaa-acctgcataattccttaaaattcctccataaccaactcttctaggagatccaaggcaacttccatcaacatttagaatgacacaagaa 50823187  T
Q  223 tgattattgctgttccatttgatgaattgggcttcatgagtagtactaga 272  Q
    ||||||||| ||||||| || ||||||||| |||||| ||||||||||||    
T  50823188 tgattattgttgttccacttaatgaattggtcttcatcagtagtactaga 50823237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 156
Target Start/End: Complemental strand, 12271303 - 12271172
Alignment:
Q  24 gtaatacccatttctttggccaacaggagacccttatagatgacataaagttcaacatacaagatatcaggtgaattttagatgtatccagaaaagcctg 123  Q
    ||||||||||| ||||| | || || |||||| | ||||||| |||| |  ||| ||||||| || ||||  ||||||   ||||| |||||||||||||    
T  12271303 gtaatacccatgtctttagtcatcaagagaccatgatagatggcatataactcagcatacaaaatgtcagaagaatttggaatgtagccagaaaagcctg 12271204  T
Q  124 ataagtaaaaaacctgcatcatttcttaaaatt 156  Q
    | ||| || ||||||||||||||||||||||||    
T  12271203 acaag-aagaaacctgcatcatttcttaaaatt 12271172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 23 - 250
Target Start/End: Original strand, 11052149 - 11052375
Alignment:
Q  23 agtaatacccatttctttggccaacaggagacccttatagatgacataaagttcaacatacaagatatcaggtgaattttagatgtatccagaaaagcct 122  Q
    ||||||||| |||||||||||||||| |||||||||||||||| |||| || ||||||||||||||||||| || |||||  ||||| | ||||||||||    
T  11052149 agtaatacctatttctttggccaacaagagacccttatagatggcatagagctcaacatacaagatatcagatggattttgaatgtacctagaaaagcct 11052248  T
Q  123 gataagtaaaaaacctgcatcatttcttaaaattcctccataacctgctcttataagagatctaaggcaacttccatcaacattaaggatgacacaagaa 222  Q
    || ||| |||||| |||||||||||| |||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||| ||||||||    
T  11052249 gacaag-aaaaaatctgcatcatttcgtaaaattcctccataaccagctcttataggagatccaaggcaacttccatcaacattaaggatgtcacaagaa 11052347  T
Q  223 tgattattgctgttccatttgatgaatt 250  Q
    ||||||||| ||||||| ||||||||||    
T  11052348 tgattattgttgttccacttgatgaatt 11052375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 23 - 259
Target Start/End: Complemental strand, 24874099 - 24873864
Alignment:
Q  23 agtaatacccatttctttggccaacaggagacccttatagatgacataaagttcaacatacaagatatcaggtgaattttagatgtatccagaaaagcct 122  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||| |||||  ||||||||||||||| ||||||||  ||||||||| |||| |||    
T  24874099 agtaatacccatttctttagccaacaagagacccttatagatgacatagagttcggcatacaagatatcagatgaattttgaatgtatccataaaatcct 24874000  T
Q  123 gataagtaaaaaacctgcatcatttcttaaaattcctccataacctgctcttataagagatctaaggcaacttccatcaacattaaggatgacacaagaa 222  Q
    || ||| ||||||||||||| |||||||||||||||||||||||  ||| || || |||||| || |||||||||||||||||||||||||||||||| |    
T  24873999 gacaag-aaaaaacctgcataatttcttaaaattcctccataactagctattgtaggagatccaatgcaacttccatcaacattaaggatgacacaagca 24873901  T
Q  223 tgattattgctgttccatttgatgaattgggcttcat 259  Q
    ||||||||  ||||||| |||||||||||| ||||||    
T  24873900 tgattattattgttccacttgatgaattggtcttcat 24873864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 28 - 244
Target Start/End: Complemental strand, 11106764 - 11106549
Alignment:
Q  28 tacccatttctttggccaacaggagacccttatagatgacataaagttcaacatacaagatatcaggtgaattttagatgtatccagaaaagcctgataa 127  Q
    ||||||| | |||||||| ||  || |||| ||| ||| ||||||||||| || |||| |||| ||  ||||||| |||||| ||||| || || || ||    
T  11106764 tacccatgtttttggccagcaaaaggccctgatatatggcataaagttcagcaaacaaaatattagaagaattttggatgtaaccagagaaacccgacaa 11106665  T
Q  128 gtaaaaaacctgcatcatttcttaaaattcctccataacctgctcttataagagatctaaggcaacttccatcaacattaaggatgacacaagaatgatt 227  Q
    ||||||| | ||||| ||||||||||| |||||||||||| || ||| || ||||||  | |||||||   ||||||||||||||||||||||| || ||    
T  11106664 gtaaaaa-cttgcataatttcttaaaactcctccataaccggcccttgtaggagatcccaagcaacttaagtcaacattaaggatgacacaagagtggtt 11106566  T
Q  228 attgctgttccatttga 244  Q
    |||| ||||||||||||    
T  11106565 attgttgttccatttga 11106549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 216
Target Start/End: Complemental strand, 30987028 - 30986943
Alignment:
Q  131 aaaaacctgcatcatttcttaaaattcctccataacctgctcttataagagatctaaggcaacttccatcaacattaaggatgaca 216  Q
    |||||||||||||||||||||||| ||||| |||||| || |   || |||| |  | ||||||| | ||||||||||||||||||    
T  30987028 aaaaacctgcatcatttcttaaaactcctctataaccagcccacgtaggagagcccaagcaactttcgtcaacattaaggatgaca 30986943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 18055682 - 18055614
Alignment:
Q  181 gatctaaggcaacttccatcaacattaaggatgacacaagaatgattattgctgttccatttgatgaat 249  Q
    |||| ||| ||||| |||||||||||||| || |||||||| || |||||  ||||||| |||||||||    
T  18055682 gatccaagacaactaccatcaacattaagaatcacacaagagtggttattattgttccacttgatgaat 18055614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 66 - 270
Target Start/End: Original strand, 43708934 - 43709137
Alignment:
Q  66 acataaagttcaacatacaagatatcaggtgaattttagatgtatccagaaaagcctgataagtaaaaaacctgcatcatttcttaaaattcctccataa 165  Q
    ||||| || ||||||||||||||||||  ||||||||  ||||||| |||||| ||| | ||| ||||||  ||||| ||||||||||||||||||||||    
T  43708934 acatagagctcaacatacaagatatcatttgaattttgaatgtatctagaaaatcctcacaag-aaaaaagatgcataatttcttaaaattcctccataa 43709032  T
Q  166 cctgctcttataagagatctaaggcaacttccatcaacattaaggatgacacaagaatgattattgctgttccatttgatgaattgggcttcatgagtag 265  Q
    ||| |||||||| |||||| ||  |||||||||||||||||||||||||||||| ||||||||||| ||||||  |||||||||||| |||||| |||||    
T  43709033 cctactcttataggagatccaatacaacttccatcaacattaaggatgacacaaaaatgattattgttgttccgcttgatgaattggtcttcatcagtag 43709132  T
Q  266 tacta 270  Q
    |||||    
T  43709133 tacta 43709137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 43706712 - 43706759
Alignment:
Q  23 agtaatacccatttctttggccaacaggagacccttatagatgacata 70  Q
    |||||| || |||||||||||||||| |||||||||||| ||||||||    
T  43706712 agtaatgcctatttctttggccaacaagagacccttatatatgacata 43706759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 216
Target Start/End: Original strand, 564570 - 564599
Alignment:
Q  187 aggcaacttccatcaacattaaggatgaca 216  Q
    ||||||||||||||||||||||||||||||    
T  564570 aggcaacttccatcaacattaaggatgaca 564599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 26 - 251
Target Start/End: Original strand, 9083126 - 9083348
Alignment:
Q  26 aatacccatttctttggccaacaggagacccttatagatgacataaagttcaacatacaagatatcaggtgaattttagatgtatccagaaaagcctgat 125  Q
    ||||||||| | ||||||||||| |||||| ||||||||  |||| || ||| ||||||||||  ||| ||||||||  |||||||||||||||||| |     
T  9083126 aatacccatatatttggccaacaagagacctttatagatagcatagagctcatcatacaagat--cagatgaattttgaatgtatccagaaaagcctaac 9083223  T
Q  126 aagtaaaaaacctgcatcatttcttaaaattcctccataacctgctcttataagagatctaaggcaacttccatcaacattaaggatgacacaagaatga 225  Q
    ||| |||||||||||||  |||||||||||||||||||| || |||||||   |||||| ||| ||||||||||||||||||||| ||||||||||||||    
T  9083224 aag-aaaaaacctgcatagtttcttaaaattcctccatagccagctcttactggagatccaagacaacttccatcaacattaaggttgacacaagaatga 9083322  T
Q  226 ttattgctgttccatttgatgaattg 251  Q
    |||||| || |||| |||||||||||    
T  9083323 ttattgttggtccacttgatgaattg 9083348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 59 - 164
Target Start/End: Complemental strand, 35532805 - 35532701
Alignment:
Q  59 atagatgacataaagttcaacatacaagatatcaggtgaattttagatgtatccagaaaagcctgataagtaaaaaacctgcatcatttcttaaaattcc 158  Q
    |||||||||||| |  ||||||||||| || ||||  ||||||   |||||||||||||||||||| |||| | | ||||||||||||||||||||||||    
T  35532805 atagatgacatataactcaacatacaaaatgtcagaagaatttggaatgtatccagaaaagcctgacaagt-agacacctgcatcatttcttaaaattcc 35532707  T
Q  159 tccata 164  Q
     |||||    
T  35532706 accata 35532701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 131 - 239
Target Start/End: Complemental strand, 28697269 - 28697161
Alignment:
Q  131 aaaaacctgcatcatttcttaaaattcctccataacctgctcttataagagatctaaggcaacttccatcaacattaaggatgacacaagaatgattatt 230  Q
    ||||||| |||||||||||||| | ||||||||| ||  |||||||| |||| | | | ||||||| | ||||||| ||||| | ||| |||||||||||    
T  28697269 aaaaacccgcatcatttcttaagaatcctccatagccaactcttatatgagagccacgacaacttctaccaacatttaggattaaacatgaatgattatt 28697170  T
Q  231 gctgttcca 239  Q
    | |||||||    
T  28697169 gttgttcca 28697161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 34295602 - 34295643
Alignment:
Q  133 aaacctgcatcatttcttaaaattcctccataacctgctctt 174  Q
    |||||||||||||||||||||||||| ||||| || ||||||    
T  34295602 aaacctgcatcatttcttaaaattccaccatagccagctctt 34295643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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