View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17991_high_6 (Length: 469)
Name: NF17991_high_6
Description: NF17991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17991_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 9733340 - 9733042
Alignment:
| Q |
1 |
ttggtgaatggcacatcttgagtgtaatctaagggccccaggaggaagttctcaacaagaaaaaggtcaataatttgtggttggaatttcatattttatt |
100 |
Q |
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| T |
9733340 |
ttggtgaatggcacatcttgagtgtaatctaagggtcccaggaggaagttctcaacaagaaaaaggtcaataatttgtggttggaatttcatattttatt |
9733241 |
T |
|
| Q |
101 |
actctctttggttactttcaaagttcatacacaaaagtgaaatgcttgtgnnnnnnnagcaatttttaatattgtgttgttctttgtctaattttgataa |
200 |
Q |
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| T |
9733240 |
actctctttggttactttcaaagttcatacacaaaagtgaaatgcttgtgtttttttagcaatttttaatattgtgttgttctttgtctaattttgataa |
9733141 |
T |
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| Q |
201 |
aaaagatggatttgagcgacccttttaccttatgaacatggaggaagaaattgaagattaaagttgtaaactttttcagaaacaaatcaagggcattaa |
299 |
Q |
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| T |
9733140 |
aaaatatgaatttgagcgacccttttaccttatgaacatggaggaagaaattgaagattaaagttgtaaactttttcagaaacaaatcaagggcattaa |
9733042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 347 - 467
Target Start/End: Complemental strand, 9732998 - 9732878
Alignment:
| Q |
347 |
gcaggtgttaaaaatgatgatttgtatgaagagttatggaagttgtgtgcaggacctttggtgggtgttcctaatactggtgacagagttttctactttc |
446 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
9732998 |
gcaggtgttaaaaatgatgatttgtatgaagagttatggaagttgtgtgcaggacctttggtggatgttcctaatactggtgacagagttttctactttc |
9732899 |
T |
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| Q |
447 |
ctcaaggtcacctggaccaag |
467 |
Q |
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| T |
9732898 |
ctcaaggtcacatggaacaag |
9732878 |
T |
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