View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17991_high_60 (Length: 238)
Name: NF17991_high_60
Description: NF17991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17991_high_60 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 9 - 238
Target Start/End: Complemental strand, 36844917 - 36844688
Alignment:
| Q |
9 |
gattatactcggaaagtgaccagaagaacagcaattggtgaacttccacctattggtacatcgcctctattgtctgtcatttttccagaagacaatgaag |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
36844917 |
gattctactcggaaagtgaccagaagaacagcaattggtgaacttccacctattggtacatcgcctctattgtctgtcatttttccagaagacagtgagg |
36844818 |
T |
|
| Q |
109 |
aagtcatattggagtaccgtaaaattatagctgaagattttctcagagcaaatccaaattacatatctccaactgttcggtatgaagattacgatgagga |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36844817 |
aagtcatattggagtaccgtaaaattatagctgaagattttctcagagcaaatccaaattacatatctccaactgttcggtatgaagattacgatgagga |
36844718 |
T |
|
| Q |
209 |
caacaaagatatagtaaaggagtatatgaa |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
36844717 |
caacaaagatatagtaaaggagtatatgaa |
36844688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 18930600 - 18930377
Alignment:
| Q |
15 |
actcggaaagtgaccagaagaacagcaattggtgaacttccacctattggtacatcgcctctattgtctgtcatttttccagaagacaatgaagaagtca |
114 |
Q |
| |
|
||||||| |||||||||||||| || ||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18930600 |
actcggagagtgaccagaagaaaagaaattgatgaacttcctcccattggtacatcgcctctattgtctgtcatttttccagaagacaatgaagaagtca |
18930501 |
T |
|
| Q |
115 |
tattggagtaccgtaaaattatagctgaagattttctcagagcaaatccaaattacatatctccaactgttcggtatgaagattacgatgaggacaacaa |
214 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| || || ||||||||||| |
|
|
| T |
18930500 |
tattggagtaccgtaaaattatagccgaagattttctcagagctaatccaaattacatatttccaactgttcggtatgaagactatgacgaggacaacaa |
18930401 |
T |
|
| Q |
215 |
agatatagtaaaggagtatatgaa |
238 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
18930400 |
agatatagtaaaggagtatatgaa |
18930377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University