View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17991_high_64 (Length: 219)

Name: NF17991_high_64
Description: NF17991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17991_high_64
NF17991_high_64
[»] chr6 (1 HSPs)
chr6 (13-208)||(12197354-12197551)
[»] chr7 (1 HSPs)
chr7 (164-209)||(6373240-6373285)
[»] chr3 (1 HSPs)
chr3 (49-114)||(14637619-14637684)
[»] chr2 (4 HSPs)
chr2 (51-114)||(33682574-33682636)
chr2 (51-114)||(33699628-33699690)
chr2 (164-208)||(33683906-33683950)
chr2 (164-208)||(33700960-33701004)


Alignment Details
Target: chr6 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 13 - 208
Target Start/End: Complemental strand, 12197551 - 12197354
Alignment:
Q  13 agaaaagaagatagaggaatatttctaatcaattaaaacaatcacaaatcagatgaagctatgtggtgagactctttctgataaagcaatcatggagaaa 112  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12197551 agaaaagaacatagaggaatatttctaatcaattcaaacaatcacaaatcagatgaagctatgttgtgagactctttctgataaagcaatcatggagaaa 12197452  T
Q  113 attctcataattctaccatctc--agtatttgtaagatttgaaggtggtgaatattctcagaatagatggaggtggtgaatatacttctagatatttt 208  Q
    ||||||||||||||||||||||  | | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12197451 attctcataattctaccatctcatattctttgtaagatttgaaggtggtgaatattctcagaacagatggaggtggtgaatatacttctagatatttt 12197354  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 6373285 - 6373240
Alignment:
Q  164 attctcagaatagatggaggtggtgaatatacttctagatattttt 209  Q
    ||||||| || |||||||||||||||||||||||||||| ||||||    
T  6373285 attctcaaaacagatggaggtggtgaatatacttctagagattttt 6373240  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 14637619 - 14637684
Alignment:
Q  49 aacaatcacaaatcagatgaagctatgtggtgagactctttctgataaagcaatcatggagaaaat 114  Q
    |||||||||||| ||||||||| | |||||||||||||||| ||||||| || | ||||| |||||    
T  14637619 aacaatcacaaagcagatgaagatttgtggtgagactctttttgataaatcagttatggaaaaaat 14637684  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 114
Target Start/End: Original strand, 33682574 - 33682636
Alignment:
Q  51 caatcacaaatcagatgaagctatgtggtgagactctttctgataaagcaatcatggagaaaat 114  Q
    |||||||||||||||| || |||||||||||||| |||||||||||| || |  ||||||||||    
T  33682574 caatcacaaatcagataaa-ctatgtggtgagacactttctgataaatcagttgtggagaaaat 33682636  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 114
Target Start/End: Original strand, 33699628 - 33699690
Alignment:
Q  51 caatcacaaatcagatgaagctatgtggtgagactctttctgataaagcaatcatggagaaaat 114  Q
    |||||||||||||||| || |||||||||||||| |||||||||||| || |  ||||||||||    
T  33699628 caatcacaaatcagataaa-ctatgtggtgagacactttctgataaatcagttgtggagaaaat 33699690  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 33683906 - 33683950
Alignment:
Q  164 attctcagaatagatggaggtggtgaatatacttctagatatttt 208  Q
    ||||| |||| ||||||||||||||||||||| |||||| |||||    
T  33683906 attcttagaacagatggaggtggtgaatatacctctagagatttt 33683950  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 33700960 - 33701004
Alignment:
Q  164 attctcagaatagatggaggtggtgaatatacttctagatatttt 208  Q
    ||||| |||| ||||||||||||||||||||| |||||| |||||    
T  33700960 attcttagaacagatggaggtggtgaatatacctctagagatttt 33701004  T

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