View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17991_high_66 (Length: 206)
Name: NF17991_high_66
Description: NF17991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17991_high_66 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 49254949 - 49254768
Alignment:
| Q |
1 |
cacaaagagagatagcaatagctgtgctagaaagagaaagtttacacaaatgaccaaccatcatcattgaaataatttgtagaaaatattgtgacaaagt |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49254949 |
cacagagagagatagcaatagctgtgctagaaagagaaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaaaatattgtgacaaagt |
49254850 |
T |
|
| Q |
101 |
tacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacacgccatgttatgcttcttgaacca |
182 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
49254849 |
tacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacaccccatgttatgcttcttgaacca |
49254768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 49267211 - 49267028
Alignment:
| Q |
1 |
cacaaagagagatagcaatagctgtgctagaaagagaaagtttacacaaatgaccaaccatcatcattgaaataatttgtagaaaatattgtgacaaagt |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
49267211 |
cacagagagagatagcaatagctgtgctagaaagagcaagtttacccaaacgaccaaccattatcattgaaataatttgtagaaaatattgtgacagagt |
49267112 |
T |
|
| Q |
101 |
tacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacacgccatgttatgcttcttgaaccacc |
184 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
49267111 |
gacggcgatcataggcagagctagaaaacaaacatctttcacctcttgaaaaaatacaccccatgttatgcttcttgaatcacc |
49267028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 6 - 171
Target Start/End: Complemental strand, 49271612 - 49271447
Alignment:
| Q |
6 |
agagagatagcaatagctgtgctagaaagagaaagtttacacaaatgaccaaccatcatcattgaaataatttgtagaaaatattgtgacaaagttacac |
105 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49271612 |
agagagatagcaatagctgtggtagaaagagcaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaaaatattgtgacaaagttacac |
49271513 |
T |
|
| Q |
106 |
taatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacacgccatgttatgc |
171 |
Q |
| |
|
||||||||||||| |||||||||| |||||||| |||||||||| ||| |||| ||||| ||||| |
|
|
| T |
49271512 |
taatcataggcaaagctagaaaaccaacatcttctacctcttgaacaaacacaccccatgatatgc |
49271447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 14 - 135
Target Start/End: Original strand, 49274640 - 49274761
Alignment:
| Q |
14 |
agcaatagctgtgctagaaagagaaagtttacacaaatgaccaaccatcatcattgaaataatttgtagaaaatattgtgacaaagttacactaatcata |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
49274640 |
agcaatagctgtgctagaaagagaaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaaaatattgtgacaaagttacactagtcata |
49274739 |
T |
|
| Q |
114 |
ggcaatgctagaaaacaaacat |
135 |
Q |
| |
|
||||| |||||||||| ||||| |
|
|
| T |
49274740 |
ggcaaagctagaaaaccaacat |
49274761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University