View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17991_high_9 (Length: 431)
Name: NF17991_high_9
Description: NF17991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17991_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 91 - 410
Target Start/End: Original strand, 11437198 - 11437515
Alignment:
| Q |
91 |
ttcagtggtctttctagcatgccaaatgacgaatcaaaatacctaccaacataaagtgaagnnnnnnnnggttgtatagaacatgctaattgtacatatg |
190 |
Q |
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| T |
11437198 |
ttcagtggtctttctaccatgccaaatgactaatcaaaatacctaccaacataaagtgaagaaaaaaaaggttgtatagaacatgctaa--gtacatatg |
11437295 |
T |
|
| Q |
191 |
aacacgaatttgaacattcagtgataatctctnnnnnnnnnnnnnntcagtcataactcacatggaactattcattcacgtcttaagcatatttattaag |
290 |
Q |
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| T |
11437296 |
aacacgaatttgaacattcagtgataatctctaaaaaatgaaaaaatcagtcataactcacatggaactattcattcacgtcttaagcatatttattaag |
11437395 |
T |
|
| Q |
291 |
gcactaaacaaaaaagtaaagaaaagacatggttaatattgaagaagcctcattgaacaaaaggaatagaacagtgtcccaaagaggaatacgaatcata |
390 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
11437396 |
gcactaaacaaaaaagtaaagaaaagacatggttcatattgaagaagcctcattgaacaaaaggaacagaacagtgtcccaaagaggaatacgaatcata |
11437495 |
T |
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| Q |
391 |
tgaagattttctaacttaca |
410 |
Q |
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|||||||||||||||||||| |
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| T |
11437496 |
tgaagattttctaacttaca |
11437515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 11437026 - 11437098
Alignment:
| Q |
1 |
aagtaatagtttaaacttaatgtagcataaagcatctcctattgcataatctagtttgcctccaaaaacatca |
73 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11437026 |
aagtaatagtctaaacttaatgtagcataaagcatctcctattgcataatctagtttgcctccaaaaacatca |
11437098 |
T |
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