View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17991_low_1 (Length: 703)
Name: NF17991_low_1
Description: NF17991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17991_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 496; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 175 - 686
Target Start/End: Original strand, 17859508 - 17860019
Alignment:
| Q |
175 |
cactaacactagttttttcaatcacagctcattggttgtgattgagatgatgatgcatctccttgtacaacagctgctctaacaccacaagatgttgatc |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17859508 |
cactaacactagttttttcaatcacagctcattggctgtgattgagatgatgatgcatctccttgtacaacagctgctctaacaccacaagatgttgatc |
17859607 |
T |
|
| Q |
275 |
cattagctgatggtccatcaaattctatatacaaatacaaggaccaagcaatatgattagttaatggcatttaaacaagaataaatgccacacatttaaa |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17859608 |
cattagctgatggtccatcaaattctatatacaaatacaaggaccaagcaatatgattagttaatggcatttaaacaagaataaatgccacacatttaaa |
17859707 |
T |
|
| Q |
375 |
agttaaaataaacatattaaataccttatacaacagtggcagacaactcaaattcctcatttatgttgaggtctttgaattgattcaaagtgggtttcaa |
474 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17859708 |
agttaaaataaacatattaaatacctgatacaacagtggcagacagctcaaattcctcatttatgttgaggtctttgaattgattcaaagtgggtttcaa |
17859807 |
T |
|
| Q |
475 |
ccaattttgtgcacagatcaatgcctctgccatttgtgggttcaatgaacttctatatgtatctaaaactcttcctccagtgctaaaggcactttcagaa |
574 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17859808 |
ccaattttgtgcacagatcaatgcctctgccatttgtgggttcaatgaacttctatatgtatctaaaactcttcctccagtgctaaaggcactttcagaa |
17859907 |
T |
|
| Q |
575 |
gccacagttgaaactggtgtagctaaaacatccctcaccatggatgacaaaacaggataacgacaagagttttgtttccaccaaagaaggatgtcaaagt |
674 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
17859908 |
gccacagttgaaactggtgtagctaaaacatccctcaccatggatgacaaaacaggataacgacaagagttttgtttccaccaaagaaggatctcaaagt |
17860007 |
T |
|
| Q |
675 |
tgacatcctccg |
686 |
Q |
| |
|
|||||||||||| |
|
|
| T |
17860008 |
tgacatcctccg |
17860019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 17859347 - 17859411
Alignment:
| Q |
14 |
aaaatgcactaagcaaagtcattaatcattatgattaatgacaccaaaaaagggttaagaacctg |
78 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17859347 |
aaaatgcactaagcaaagtcattaatcattatgattaatgacaccaaaaaagggttaagaacctg |
17859411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 467 - 673
Target Start/End: Complemental strand, 22348149 - 22347943
Alignment:
| Q |
467 |
ggtttcaaccaattttgtgcacagatcaatgcctctgccatttgtgggttcaatgaacttctatatgtatctaaaactcttcctccagtgctaaaggcac |
566 |
Q |
| |
|
||||||| ||||||||| | ||| ||||| || || ||||||| || ||||||| ||||||||||| ||||||| ||||| ||||||||||| || | |
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|
| T |
22348149 |
ggtttcagccaattttgagtacaaatcaaagcttccgccatttccggactcaatgagcttctatatgtgtctaaaatccttcccccagtgctaaatgcgc |
22348050 |
T |
|
| Q |
567 |
t-ttcagaagccacagttgaaactggtgtagctaaaacatccctcaccatggatgacaaaacaggataacgacaagagttttgtttccaccaaagaagga |
665 |
Q |
| |
|
| |||| |||| || | ||| |||||||| || || ||||| || ||||| | || ||||||||| |||||| | |||||| ||||||||| ||| | |
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|
| T |
22348049 |
tcttca-aagcaactgatgatactggtgtggccaacacatctctaaccattgttgccaaaacagggtaacgaacatagtttttcttccaccaagtaagaa |
22347951 |
T |
|
| Q |
666 |
tgtcaaag |
673 |
Q |
| |
|
|||||||| |
|
|
| T |
22347950 |
tgtcaaag |
22347943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 175 - 686
Target Start/End: Complemental strand, 34916304 - 34915793
Alignment:
| Q |
175 |
cactaacactagttttttcaatcacagctcattggttgtgattgagatgatgatgcatctccttgtacaacagctgctctaacaccacaagatgttgatc |
274 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34916304 |
cactaacattagttttttcaatcacagctcattggctgtgattgagatgatgatgcatctccttgtacaacagctgctctaacaccacaagatgttgatc |
34916205 |
T |
|
| Q |
275 |
cattagctgatggtccatcaaattctatatacaaatacaaggaccaagcaatatgattagttaatggcatttaaacaagaataaatgccacacatttaaa |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34916204 |
cattagctgatggtccatcaaattctatatacaaatacaaggaccaagcaatatgattagttaatggcatttaaacaagaataaatgccacacatttaaa |
34916105 |
T |
|
| Q |
375 |
agttaaaataaacatattaaataccttatacaacagtggcagacaactcaaattcctcatttatgttgaggtctttgaattgattcaaagtgggtttcaa |
474 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34916104 |
agttaaaataaacatattaaatacctgatacaacagtggtagacagctcaaattcctcatttatgttgaggtctttgaattgattcaaagtgggtttcaa |
34916005 |
T |
|
| Q |
475 |
ccaattttgtgcacagatcaatgcctctgccatttgtgggttcaatgaacttctatatgtatctaaaactcttcctccagtgctaaaggcactttcagaa |
574 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34916004 |
ccaattttgtgcacagatcaatgcctctgccatttgtgggttcaatgaacttctatatgtatctaaaactcttcctccagtgctaaaggcactttcagaa |
34915905 |
T |
|
| Q |
575 |
gccacagttgaaactggtgtagctaaaacatccctcaccatggatgacaaaacaggataacgacaagagttttgtttccaccaaagaaggatgtcaaagt |
674 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34915904 |
gccacagttgaaactggtgtagctaaaacatccctcaccatggatgacaaaacaggataacgacaagagttttgtttccacgaaagaaggatgtcaaagt |
34915805 |
T |
|
| Q |
675 |
tgacatcctccg |
686 |
Q |
| |
|
|||||||||||| |
|
|
| T |
34915804 |
tgacatcctccg |
34915793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 34916465 - 34916401
Alignment:
| Q |
14 |
aaaatgcactaagcaaagtcattaatcattatgattaatgacaccaaaaaagggttaagaacctg |
78 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34916465 |
aaaatgcactaagcaaagtcattaatcattatgattaatgacaccaaaaaagggttaagaacctg |
34916401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 175 - 686
Target Start/End: Original strand, 4968039 - 4968550
Alignment:
| Q |
175 |
cactaacactagttttttcaatcacagctcattggttgtgattgagatgatgatgcatctccttgtacaacagctgctctaacaccacaagatgttgatc |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4968039 |
cactaacactagttttttcaatcacagctcattggctgtgattgagatgatgatgcatctccttgtacaacagctgctctaaaaccacaagatgttgatc |
4968138 |
T |
|
| Q |
275 |
cattagctgatggtccatcaaattctatatacaaatacaaggaccaagcaatatgattagttaatggcatttaaacaagaataaatgccacacatttaaa |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4968139 |
cattagctgatggtccatcaaattctatatacaaatacaaggaccaaacaatatgattagttaatggcatttaaacaagaataaatgccacacatttaaa |
4968238 |
T |
|
| Q |
375 |
agttaaaataaacatattaaataccttatacaacagtggcagacaactcaaattcctcatttatgttgaggtctttgaattgattcaaagtgggtttcaa |
474 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4968239 |
agttaaaataaacatattaaatacctgatacaacagtggcagacagctcaaattcctcatttatgttgaggtctttgaattgattcaaagtgggtttcaa |
4968338 |
T |
|
| Q |
475 |
ccaattttgtgcacagatcaatgcctctgccatttgtgggttcaatgaacttctatatgtatctaaaactcttcctccagtgctaaaggcactttcagaa |
574 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4968339 |
ccaattttgtgcacagatcaatgcctctgccatttgtgggttcaatgaacttctatatgtatctaaaactcttcctccagtgctaaaggcactttcagaa |
4968438 |
T |
|
| Q |
575 |
gccacagttgaaactggtgtagctaaaacatccctcaccatggatgacaaaacaggataacgacaagagttttgtttccaccaaagaaggatgtcaaagt |
674 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4968439 |
gccacagttgaaactggtgtagctaaaacatccctcaccatggatgacaaaacaggataacgacaagagttttgtttccaccaaagaaggatctcaaagt |
4968538 |
T |
|
| Q |
675 |
tgacatcctccg |
686 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4968539 |
tgacatcctccg |
4968550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 4967878 - 4967942
Alignment:
| Q |
14 |
aaaatgcactaagcaaagtcattaatcattatgattaatgacaccaaaaaagggttaagaacctg |
78 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4967878 |
aaaatgcactaagcaaagtcattaatcattatgattaatgacaccaaaaaagggttaagaacctg |
4967942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 516 - 585
Target Start/End: Original strand, 14593114 - 14593183
Alignment:
| Q |
516 |
tcaatgaacttctatatgtatctaaaactcttcctccagtgctaaaggcactttcagaagccacagttga |
585 |
Q |
| |
|
|||| ||||| |||||||| |||||||||||||||||||||||||| || ||||||||||| |||||||| |
|
|
| T |
14593114 |
tcaaggaactcctatatgtgtctaaaactcttcctccagtgctaaatgcgctttcagaagcaacagttga |
14593183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 527 - 585
Target Start/End: Complemental strand, 13308444 - 13308386
Alignment:
| Q |
527 |
ctatatgtatctaaaactcttcctccagtgctaaaggcactttcagaagccacagttga |
585 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| | ||||||||||| |||||||| |
|
|
| T |
13308444 |
ctatatgtgtctaaaactcttcctccagtgctaaatgtgctttcagaagcaacagttga |
13308386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 467 - 509
Target Start/End: Original strand, 16298749 - 16298791
Alignment:
| Q |
467 |
ggtttcaaccaattttgtgcacagatcaatgcctctgccattt |
509 |
Q |
| |
|
||||||||||||||||| | |||||| |||||||||||||||| |
|
|
| T |
16298749 |
ggtttcaaccaattttgggtacagattaatgcctctgccattt |
16298791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 467 - 509
Target Start/End: Original strand, 22896245 - 22896287
Alignment:
| Q |
467 |
ggtttcaaccaattttgtgcacagatcaatgcctctgccattt |
509 |
Q |
| |
|
||||||||||||||||| | |||||| |||||||||||||||| |
|
|
| T |
22896245 |
ggtttcaaccaattttgggtacagattaatgcctctgccattt |
22896287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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