View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17991_low_13 (Length: 427)
Name: NF17991_low_13
Description: NF17991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17991_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 4 - 251
Target Start/End: Complemental strand, 34797300 - 34797053
Alignment:
| Q |
4 |
gcccttataaatgctcgagcacacctcttacacgcgtccaccagatgttcaggcatgctttcatttcttcttagggaatcccacccacgaccacgtccat |
103 |
Q |
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| T |
34797300 |
gcccttataaatgctcgagcacacctcttacacgcgtccactagatgttcaggcatgctttcatttcttcttagggaatcccacccacgaccacgtccat |
34797201 |
T |
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| Q |
104 |
gacaaacacggcctacagccaagtccttccaaggaagctttacatcataagtctcagccgaccaaaaatcctttgctttagccctagagcagtcaacatc |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34797200 |
gacaaacacggcctacagccaagtccttccaaggaagctttacatcataagtctcagccgaccaaaaatcctttgctttagccctagagcagtcaacatc |
34797101 |
T |
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| Q |
204 |
cgggttgttcttaagcatatcaaagctgaaatagagaccaaaacagta |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34797100 |
cgggttgttcttaagcatatcaaagctgaaatagagaccaaaacagta |
34797053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 318 - 412
Target Start/End: Complemental strand, 34796986 - 34796892
Alignment:
| Q |
318 |
cgtaaaagcaagttcttcaattgcttcctgtttgatttgctgccagggctttgcacgttcctcttcttcctcttcatatttacgcttgcaagaag |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34796986 |
cgtaaaagcaagttcttcaattgcttcctgtttgatttgctgccagggctttgcacgttcctcttcttcctcttcatatttacgcttgcaagaag |
34796892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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