View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17991_low_14 (Length: 421)
Name: NF17991_low_14
Description: NF17991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17991_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 17 - 409
Target Start/End: Complemental strand, 49256569 - 49256172
Alignment:
| Q |
17 |
accatgtaaactatctactataacagatagacttat-----gagccatatctgtgacataatccaccacatcctgctcattgctaaatatataacctaac |
111 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49256569 |
accatgtaaactatctactataacagatagacttattagaggagccatatctgtgacataatccaccacatcctgctcattgctaaatatataacctaac |
49256470 |
T |
|
| Q |
112 |
acccgtcgagaggcgaaaatgatgaaactcaccaatatagcctcagaaactgcgatagccatagcagcatagacagacaatcgtgctgcgtgtggacatc |
211 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49256469 |
acccgtcgagaggcgaaaatgatggaactcaccaatatagcctcagaaactgcgatagccatagcagcatagacagacaatcgtgctgcgtgtggacatc |
49256370 |
T |
|
| Q |
212 |
cagctcctaatgcatttgaaactcttgcactgaataacacaacgaaaagaaaaaccaaacacaaacaaagaaatagcatcactttttatttgtacagaaa |
311 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49256369 |
cagctcctaatgcatttgaaactcttgcactgaatgacacaacgaaaagaaaaaccaaacacaaacaaagaaatagcatcactttttatttgtacagaaa |
49256270 |
T |
|
| Q |
312 |
aatgtgtatgcacaaattgaatgggttttgaatgatgtgaatcaaaaccttgctgctgagccagttgcttctggtattgtatatagtgttgagatgat |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
49256269 |
aatgtgtatgcacaaattgaatgggttttgaatgatgtgaatcaaaaccttgctgctgagccagttgcttctggtattgtatagagtgttgagatgat |
49256172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 49269526 - 49269303
Alignment:
| Q |
18 |
ccatgtaaactatctactataacagatagacttatgag-----ccatatctgtgacataatccaccacatcctgctcattgctaaatatataacctaaca |
112 |
Q |
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|||||||||||||| ||||||||| || |||||| || |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
49269526 |
ccatgtaaactatccactataacatttatacttattagaggaaccatatgtgtgacatagtccaccacatcctgctcattgctaaatatataacctaaca |
49269427 |
T |
|
| Q |
113 |
cccgtcgagaggcgaaaatgatgaaactcaccaatatagcctcagaaactgcgatagccatagcagcatagacagacaatcgtgctgcgtgtggacatcc |
212 |
Q |
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|| ||||||||||||||| || |||||||||| ||||||||||||||||| | | ||||| |||| ||||||||||||| ||||| ||||||||||| |
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| T |
49269426 |
ccttccgagaggcgaaaatggtggaactcaccaaaatagcctcagaaactgcaacggtcatagaagcaaagacagacaatcgcgctgcttgtggacatcc |
49269327 |
T |
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| Q |
213 |
agctcctaatgcatttgaaactct |
236 |
Q |
| |
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| |||||||||||||||||||||| |
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| T |
49269326 |
acctcctaatgcatttgaaactct |
49269303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 346 - 409
Target Start/End: Complemental strand, 49269218 - 49269155
Alignment:
| Q |
346 |
atgtgaatcaaaaccttgctgctgagccagttgcttctggtattgtatatagtgttgagatgat |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
49269218 |
atgtgaatcaaaaccttgctgctgagccagttgcttctggtattgtatagattgttgagatgat |
49269155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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