View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17991_low_15 (Length: 419)

Name: NF17991_low_15
Description: NF17991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17991_low_15
NF17991_low_15
[»] chr2 (3 HSPs)
chr2 (17-403)||(5792036-5792422)
chr2 (232-354)||(127100-127222)
chr2 (166-214)||(13265543-13265590)
[»] chr6 (1 HSPs)
chr6 (229-368)||(29333515-29333654)
[»] chr7 (5 HSPs)
chr7 (167-350)||(10590299-10590481)
chr7 (232-354)||(46491549-46491671)
chr7 (265-358)||(29684534-29684624)
chr7 (223-297)||(29685119-29685193)
chr7 (164-208)||(3314953-3314997)
[»] chr5 (1 HSPs)
chr5 (243-354)||(2028413-2028524)
[»] chr1 (4 HSPs)
chr1 (230-350)||(21257783-21257903)
chr1 (271-350)||(19930387-19930470)
chr1 (166-213)||(16449555-16449602)
chr1 (166-213)||(16459129-16459176)
[»] chr3 (2 HSPs)
chr3 (165-214)||(47571195-47571244)
chr3 (166-214)||(49349676-49349724)
[»] chr8 (1 HSPs)
chr8 (166-214)||(42094009-42094057)


Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 17 - 403
Target Start/End: Complemental strand, 5792422 - 5792036
Alignment:
Q  17 tataaattacaacgtctatgttccacttctgccatgtgttgggcgaacaaacttaatagttacactgaccccaacaaatttgattttgacataaaagcaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5792422 tataaattacaacgtctatgttccacttctgccatgtgttgggcgaacaaacttaatagttacactgacaccaacaaatttgattttgacataaaagcaa 5792323  T
Q  117 aactaaggaactttgttaaatttttaacatacatcttattgttttgacgggtggattcaaaggtgagagttcaattaagaccctcaccggtgaagcatnn 216  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||| ||||||| |||||||||      
T  5792322 aactaaggaacttggttaaatttttaacatacatcttattgttttgataggtggattcaagggtgagagttcaattaagatcctcaccagtgaagcat-a 5792224  T
Q  217 nnnnnttcatcgttagattgaatcaatggtccatatcatttgaaaatctaaataagaacatctattactttccacacacaaccctaccc-ttatctcttt 315  Q
         ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5792223 aaaatttcattgttagattgaatcaatggtccatatcatttgaaaatctaaataagaacatctattactttccacacacaaccctaccctttatctcttt 5792124  T
Q  316 cccatttatatcattttcaattcaccacaaatatgcagatgctcgttgaaagtaaagtggaactcgtgatatgatagtcataagcaat 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5792123 cccatttatatcattttcaattcaccacaaatatgcagatgctcgttgaaagtaaagtggaactcgtgatatgatagtcataatcaat 5792036  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 232 - 354
Target Start/End: Original strand, 127100 - 127222
Alignment:
Q  232 gattgaatcaatggtccatatcatttgaaaatctaaataagaacatctattactttccacacacaaccctacccttatctctttcccatttatatcattt 331  Q
    |||| ||||||||||||| || ||||||||||  |||||||||||| || | |||||||||||||| ||||||  |||||||||| |||||  ||| ||     
T  127100 gattaaatcaatggtccaaattatttgaaaataaaaataagaacatttagttctttccacacacaatcctacctctatctctttctcatttggatccttc 127199  T
Q  332 tcaattcaccacaaatatgcaga 354  Q
    | | |||||||||||||||||||    
T  127200 ttagttcaccacaaatatgcaga 127222  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 13265543 - 13265590
Alignment:
Q  166 ggtggattcaaaggtgagagttcaattaagaccctcaccggtgaagcat 214  Q
    ||||||||| |||||||| |||||||||| ||| |||||||||||||||    
T  13265543 ggtggattctaaggtgagtgttcaattaatacc-tcaccggtgaagcat 13265590  T

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Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 229 - 368
Target Start/End: Original strand, 29333515 - 29333654
Alignment:
Q  229 ttagattgaatcaatggtccatatcatttgaaaatctaaataagaacatctattactttccacacacaaccctacccttatctctttcccatttatatca 328  Q
    |||||| |||||||||||||| || ||||||||||  | |||||||||| |||| | ||| |||||||||||||||||| | ||||||||||||  ||||    
T  29333515 ttagatcgaatcaatggtccaaattatttgaaaataaatataagaacatttattccattctacacacaaccctacccttgtttctttcccatttgcatca 29333614  T
Q  329 ttttcaattcaccacaaatatgcagatgctcgttgaaagt 368  Q
    ||||||||||| |||||||||||| ||||| |||||||||    
T  29333615 ttttcaattcatcacaaatatgcaaatgcttgttgaaagt 29333654  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 167 - 350
Target Start/End: Original strand, 10590299 - 10590481
Alignment:
Q  167 gtggattcaaaggtgagagttcaattaagaccctcaccggtgaagcatnnnnnnnttcatcgttagattgaatcaatggtccatatcatttgaaaatcta 266  Q
    |||||||| | |||||||||||||||||| |||||| ||||||||||          |||| |||||||||||||| |||| | || |||| |||||  |    
T  10590299 gtggattctagggtgagagttcaattaagtccctcatcggtgaagcaccaaaaaaa-catcattagattgaatcaagggtcaagattatttaaaaataaa 10590397  T
Q  267 aataagaacatctattactttccacacacaaccctacccttatctctttcccatttatatcattttcaattcaccacaaatatg 350  Q
    |   |||||||||||| ||||||||||||||||||| |||||| ||||| ||||||  |||  ||||||| ||||| |||||||    
T  10590398 atcgagaacatctatttctttccacacacaaccctatccttatttcttttccatttgcatctctttcaatacaccaaaaatatg 10590481  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 232 - 354
Target Start/End: Complemental strand, 46491671 - 46491549
Alignment:
Q  232 gattgaatcaatggtccatatcatttgaaaatctaaataagaacatctattactttccacacacaaccctacccttatctctttcccatttatatcattt 331  Q
    |||| ||||||||||||| || ||||||||||  |||||||||||| || | |||||||||||||| ||||||  |||||||||| | |||  ||| ||     
T  46491671 gattaaatcaatggtccaaattatttgaaaataaaaataagaacatttagttctttccacacacaatcctacctctatctctttctcgtttggatccttc 46491572  T
Q  332 tcaattcaccacaaatatgcaga 354  Q
    ||| ||||||| |||||||||||    
T  46491571 tcagttcaccataaatatgcaga 46491549  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 265 - 358
Target Start/End: Original strand, 29684534 - 29684624
Alignment:
Q  265 taaataagaacatctattactttccacacacaaccctacccttatctctttcccatttatatcattttcaattcaccacaaatatgcagatgct 358  Q
    |||| |||||| |||||| |||||||||| ||| ||||| ||||||||||  ||||||  ||||||||||||||||||| |||||||| |||||    
T  29684534 taaacaagaacgtctattcctttccacactcaatcctactcttatctctt--ccatttgcatcattttcaattcaccac-aatatgcatatgct 29684624  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 297
Target Start/End: Complemental strand, 29685193 - 29685119
Alignment:
Q  223 tcatcgttagattgaatcaatggtccatatcatttgaaaatctaaataagaacatctattactttccacacacaa 297  Q
    ||||| ||||||||||||||||| | | || ||||||||||  ||| |||||||| |||| ||||||||||||||    
T  29685193 tcatcattagattgaatcaatggccgagattatttgaaaataaaaacaagaacatttattcctttccacacacaa 29685119  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 3314953 - 3314997
Alignment:
Q  164 cgggtggattcaaaggtgagagttcaattaagaccctcaccggtg 208  Q
    ||||||||||| | |||||| ||||||||||| ||||||||||||    
T  3314953 cgggtggattctacggtgagggttcaattaagtccctcaccggtg 3314997  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 243 - 354
Target Start/End: Original strand, 2028413 - 2028524
Alignment:
Q  243 tggtccatatcatttgaaaatctaaataagaacatctattactttccacacacaaccctacccttatctctttcccatttatatcattttcaattcacca 342  Q
    ||||||| || ||||||||||  |||||||||||| || | |||||||||||||| ||||||  || ||||||| | |||  ||| || ||| |||||||    
T  2028413 tggtccaaattatttgaaaataaaaataagaacatttagttctttccacacacaatcctacctctaactctttctcgtttggatccttctcagttcacca 2028512  T
Q  343 caaatatgcaga 354  Q
    ||||||||||||    
T  2028513 caaatatgcaga 2028524  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 350
Target Start/End: Complemental strand, 21257903 - 21257783
Alignment:
Q  230 tagattgaatcaatggtccatatcatttgaaaatctaaataagaacatctattactttccacacacaaccctacccttatctctttcccatttatatcat 329  Q
    |||||||||||||||||  | || |||| ||| |  || |||||||||||||| ||||||||| |||| |||| |||||| ||||| ||||||  |||      
T  21257903 tagattgaatcaatggttaaaattatttaaaagtaaaattaagaacatctatttctttccacaaacaagcctatccttatttcttttccatttgcatctc 21257804  T
Q  330 tttcaattcaccacaaatatg 350  Q
    ||||||| |||||||| ||||    
T  21257803 tttcaatgcaccacaagtatg 21257783  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 271 - 350
Target Start/End: Original strand, 19930387 - 19930470
Alignment:
Q  271 agaacatctattactttccacacacaaccctaccctta----tctctttcccatttatatcattttcaattcaccacaaatatg 350  Q
    |||||| | ||||||||||||||||||||||||| |||    | | ||||||||||  ||| ||||||||||||||||||||||    
T  19930387 agaacacccattactttccacacacaaccctacctttatttttttttttcccatttgcatccttttcaattcaccacaaatatg 19930470  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 166 - 213
Target Start/End: Original strand, 16449555 - 16449602
Alignment:
Q  166 ggtggattcaaaggtgagagttcaattaagaccctcaccggtgaagca 213  Q
    ||||||||| | |||||| ||||||||||| |||||||||||||||||    
T  16449555 ggtggattctagggtgagggttcaattaagtccctcaccggtgaagca 16449602  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 166 - 213
Target Start/End: Original strand, 16459129 - 16459176
Alignment:
Q  166 ggtggattcaaaggtgagagttcaattaagaccctcaccggtgaagca 213  Q
    ||||||||| | |||||| ||||||||||| |||||||||||||||||    
T  16459129 ggtggattctagggtgagggttcaattaagtccctcaccggtgaagca 16459176  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 214
Target Start/End: Original strand, 47571195 - 47571244
Alignment:
Q  165 gggtggattcaaaggtgagagttcaattaagaccctcaccggtgaagcat 214  Q
    |||||||||| | |||||| | ||||||||| ||||||||||||||||||    
T  47571195 gggtggattctagggtgagggatcaattaagtccctcaccggtgaagcat 47571244  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 49349676 - 49349724
Alignment:
Q  166 ggtggattcaaaggtgagagttcaattaagaccctcaccggtgaagcat 214  Q
    ||||||||| | |||||| | ||||||||| ||||||||||||||||||    
T  49349676 ggtggattctagggtgagggatcaattaagtccctcaccggtgaagcat 49349724  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 42094009 - 42094057
Alignment:
Q  166 ggtggattcaaaggtgagagttcaattaagaccctcaccggtgaagcat 214  Q
    ||||||||| | |||||| | ||||||||| ||||||||||||||||||    
T  42094009 ggtggattctagggtgagggatcaattaagtccctcaccggtgaagcat 42094057  T

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