View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17991_low_16 (Length: 418)
Name: NF17991_low_16
Description: NF17991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17991_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 20 - 406
Target Start/End: Original strand, 35210485 - 35210871
Alignment:
| Q |
20 |
atcagtcatgtcaatcatgtggatatcatgttcgagtaacgcacatacaatagcttgtaaacttgtattatagagacggagggagagattcaatcccgcc |
119 |
Q |
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| T |
35210485 |
atcagtcatgtcaatcatgtggatatcatgttcgagtagcgcacatacaatagcttgtaaacttatattatagagacggagggagagattcaatcccacc |
35210584 |
T |
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| Q |
120 |
tacaccataatactaattatactaacatgttattcttaaaagtatattatttgaagagatttcgtaattacggttcaactgctttaaaccagtcaaacaa |
219 |
Q |
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| T |
35210585 |
tacaccataatactaattatactaacatgttattcttaaaagtatattatttgaagagatttcttaattacggttcaactgctttaaaccagtcaaacaa |
35210684 |
T |
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| Q |
220 |
cttgaggcaaaattagaatcaaatcaccaaactaaccaaaccgtggtataaaggccggttcaaggttcaactgttctatgtcgaaaacactaaatattag |
319 |
Q |
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| T |
35210685 |
ctcgaggcaaaattagaatcaaatcaccaaactaaccaaaccgtggtataaaggccggttcaaggttcaattgttctatgtcgaaaacactaaatattag |
35210784 |
T |
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| Q |
320 |
acatattattaattacctgaggaccttgttctacacctttcttgaatggatcgccaacaacacgtctcaaagcagcggcctttgctt |
406 |
Q |
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| T |
35210785 |
acatattattaattacctgaggaccttgttctacacctttcttgaatggatcgccaacaacacgtctcaaagcagcggccttggctt |
35210871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 333 - 392
Target Start/End: Original strand, 43998505 - 43998564
Alignment:
| Q |
333 |
tacctgaggaccttgttctacacctttcttgaatggatcgccaacaacacgtctcaaagc |
392 |
Q |
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| T |
43998505 |
tacctgaggaccttgctctacacccttcttaaatggatcaccaacaacacgtctcaaagc |
43998564 |
T |
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