View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17991_low_17 (Length: 418)
Name: NF17991_low_17
Description: NF17991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17991_low_17 |
 | |
|
| [»] chr1 (6 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 7 - 418
Target Start/End: Original strand, 51034990 - 51035400
Alignment:
| Q |
7 |
gaatctcctctagcttgcttaacacatattgttttagtttagcaggatcctctgcgagctctttatctgtaaaacaaattgaatgaaatggaaatttatt |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
51034990 |
gaatctcctctagcttgcttaacacatattgttttagtttagcaggatcctctgctagctctttatctgtaaaacaaattgagtgaaatggaaatttatt |
51035089 |
T |
|
| Q |
107 |
tcattttcaaagttgaaaccaatgatttaaaaattaggttaaatcgaaccaagttggaccataattggttcatttgaannnnnnnaatacttgt----ca |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| || |
|
|
| T |
51035090 |
tcattttcaaagttgaaaccaatgatttaaaaattaggttaaatcgaaccaagttggaccataattggttcgtttgaatttttgtaatacttgtagctca |
51035189 |
T |
|
| Q |
203 |
tcacatggnnnnnnnnnnnnnaatttggatacgcaaaagaaaaagggtattcgattcaattcaattcaattcaccttgcttgctaggagtacatgtgaaa |
302 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51035190 |
tcacatggtttttcattttttaatttggatacgcaaaagaaaaagggtattc-----aattcaattcaattcaccttgcttgctaggagtacatgtgaaa |
51035284 |
T |
|
| Q |
303 |
aaccaataagcacacttgtcatcacatggaacagctccaactcgaaaacctttgcctaagtactccttgaacattggttcaagttcatgaatgtccttca |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
51035285 |
aaccaataagcacacttgtcatcacatggaacagctccaactcgaaaacctttgcctaagtactccttgaacattggttcaagttcgtgagtgtccttca |
51035384 |
T |
|
| Q |
403 |
actctacataacccct |
418 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
51035385 |
actctacataacccct |
51035400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 271 - 415
Target Start/End: Original strand, 51031012 - 51031156
Alignment:
| Q |
271 |
attcaccttgcttgctaggagtacatgtgaaaaaccaataagcacacttgtcatcacatggaacagctccaactcgaaaacctttgcctaagtactcctt |
370 |
Q |
| |
|
|||||||||| || ||||||| |||||||||||||||||| ||| || ||||||||||| | ||| ||| | | |||||||||||| ||||||| | | |
|
|
| T |
51031012 |
attcaccttggttaataggagtccatgtgaaaaaccaataaacacttttctcatcacatgggatagccccagccctaaaacctttgccaaagtactgcat |
51031111 |
T |
|
| Q |
371 |
gaacattggttcaagttcatgaatgtccttcaactctacataacc |
415 |
Q |
| |
|
||||||||||||||| | ||| || |||||||||| ||||||| |
|
|
| T |
51031112 |
gaacattggttcaaggttgtgagtggtcttcaactctgcataacc |
51031156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 271 - 415
Target Start/End: Original strand, 51063764 - 51063908
Alignment:
| Q |
271 |
attcaccttgcttgctaggagtacatgtgaaaaaccaataagcacacttgtcatcacatggaacagctccaactcgaaaacctttgcctaagtactcctt |
370 |
Q |
| |
|
|||||||||| || ||||||| |||||||||||||||||| ||| || ||||||||||| | ||| ||| | | |||||||||||| ||||||| | | |
|
|
| T |
51063764 |
attcaccttggttaataggagtccatgtgaaaaaccaataaacacttttctcatcacatgggatagccccagccctaaaacctttgccaaagtactgcat |
51063863 |
T |
|
| Q |
371 |
gaacattggttcaagttcatgaatgtccttcaactctacataacc |
415 |
Q |
| |
|
||||||||||||||| | ||| || |||||||||| ||||||| |
|
|
| T |
51063864 |
gaacattggttcaaggttgtgagtggtcttcaactctgcataacc |
51063908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 51030714 - 51030783
Alignment:
| Q |
9 |
atctcctctagcttgcttaacacatattgttttagtttagcaggatcctctgcgagctctttatctgtaa |
78 |
Q |
| |
|
|||| ||||| |||| ||||||||||||||||||| |||||||| || | ||| |||||||||||||||| |
|
|
| T |
51030714 |
atcttctctaacttgtttaacacatattgttttagcttagcagggtcttgtgctagctctttatctgtaa |
51030783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 51063466 - 51063535
Alignment:
| Q |
9 |
atctcctctagcttgcttaacacatattgttttagtttagcaggatcctctgcgagctctttatctgtaa |
78 |
Q |
| |
|
|||| ||||| |||| ||||||||||||||||||| |||||||| || | ||| |||||||||||||||| |
|
|
| T |
51063466 |
atcttctctaacttgtttaacacatattgttttagcttagcagggtcttgtgctagctctttatctgtaa |
51063535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 382
Target Start/End: Complemental strand, 40616975 - 40616879
Alignment:
| Q |
286 |
taggagtacatgtgaaaaaccaataagcacacttgtcatcacatggaacagctccaactcgaaaacctttgcctaagtactccttgaacattggttc |
382 |
Q |
| |
|
||||||| ||||| |||||||| ||| ||| ||| |||| |||||||| ||||||| ||| ||||||||| || ||||| | | ||||||||||||| |
|
|
| T |
40616975 |
taggagtccatgtaaaaaaccagtaaacacccttctcattacatggaagagctccagctctaaaacctttaccaaagtattgcatgaacattggttc |
40616879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University