View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17991_low_18 (Length: 414)
Name: NF17991_low_18
Description: NF17991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17991_low_18 |
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| [»] scaffold1678 (1 HSPs) |
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| [»] scaffold0786 (1 HSPs) |
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| [»] scaffold0390 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 399
Target Start/End: Original strand, 32303755 - 32304129
Alignment:
| Q |
18 |
gtttaaaccattatttctctgcaaaaatgtgttgttggttattagtatatgtaactataaaaactcatgttcattgagaattgaataagaatttgggaga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||| ||||||||||||| |
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| T |
32303755 |
gtttaaaccattatttctctgcaaaaatgtgttgttggttatta---tatgtaactataaaaactcatgttcattgagtattaaatgagaatttgggaga |
32303851 |
T |
|
| Q |
118 |
gatttggtaatttatatctttgaacattattgtattattatttactaaagaattcttctaatattcgttatatatcgacaattgtgagggttgaccaaat |
217 |
Q |
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||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||| |
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| T |
32303852 |
tatttgctaatttatatcttcgaacattattgtattattatttactaaagaattcatctaatattcgtaatt----gacaattgtgagggttgaccaaat |
32303947 |
T |
|
| Q |
218 |
aactaactaattaattactcctcaagtcacttatcaaaaaataaataaggatcctctggtcatatttataagagcatctgatctgatgacaagcttataa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32303948 |
aactaactaattaattactcctcaagtcacttatcaaaaaataaataaggatcctccggtcatatttataagagcatctgatctgatgacaagcttataa |
32304047 |
T |
|
| Q |
318 |
gttataaggaattcaaacttggttacataacctattatgtgacttatacaatgtaccattacactttttcaactcaagtata |
399 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32304048 |
gttataaggaattcaaacttggttacataaactattatgtgacttatacaatgtaccattacactttttcaactcaagtata |
32304129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 32296155 - 32296383
Alignment:
| Q |
18 |
gtttaaaccattatttctctgcaaaaatgtgttgttggttattagtatatgtaactataaaaactcatgttcattgagaattgaataagaatttgggaga |
117 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||| ||| ||||||| |||||| ||||||| ||||||| ||||| |
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| T |
32296155 |
gtttaaattattatttctctgcaaaaatgtgttgttggttat---tatgtgtaactatacaaaatcatgtttattgagtattgaatgagaattt-ggaga |
32296250 |
T |
|
| Q |
118 |
gatttggtaatttatatctttgaacattattgtattattatttactaaagaattcttctaatattcgttatatatcgacaattgtgagggttgaccaaat |
217 |
Q |
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|||||||| |||||| |||||| |||||| ||||||||||| |||||||||||||||| |||| ||||||||||| ||||| |||| |
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| T |
32296251 |
aatttggtattttataactttgactattattttattattattt-ctaaagaattcttctattatt-----------gacaattgtgaatattgactaaat |
32296338 |
T |
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| Q |
218 |
aactaactaattaattactcctcaagtcacttatcaaaaaataaataa |
265 |
Q |
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|||||| |||||| | |||||||||| ||||||||||||||||||| |
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| T |
32296339 |
aactaattaattact---tcctcaagtcgcttatcaaaaaataaataa |
32296383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 24428931 - 24428813
Alignment:
| Q |
18 |
gtttaaaccattatttctctgcaaaaatgtgttgttggttattagtatatgtaactataaaaactcatgttcattgagaattgaataagaatttgggaga |
117 |
Q |
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|
||||||| ||||||||||||||||||||| ||||||||||||| | |||||||| |||||||||||||||||| ||||||| ||||||| ||||| |
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| T |
24428931 |
gtttaaattattatttctctgcaaaaatgttttgttggttatta---tgcctaactatacaaactcatgttcattgagtattgaatgagaattt-ggaga |
24428836 |
T |
|
| Q |
118 |
gatttggtaatttatatctttga |
140 |
Q |
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||||||||| ||||||||||||| |
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| T |
24428835 |
gatttggtattttatatctttga |
24428813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 22138368 - 22138296
Alignment:
| Q |
18 |
gtttaaaccattatttctctgcaaaaatgtgttgttggttattagtatatgtaactataaaaactcatgttcattg |
93 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||| |
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| T |
22138368 |
gtttaaattattatttctctgcaaaaatgtgttgttggttat---tatgtgtaactatacaaactcatgttcattg |
22138296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 32240476 - 32240407
Alignment:
| Q |
78 |
aaactcatgttcattgagaattgaataagaatttgggagagatttggtaatttatatctttgaacattatt |
148 |
Q |
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|||||| ||||||||||| ||||||| ||||||||| |||||||||||| ||||||||| ||| ||||||| |
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| T |
32240476 |
aaactcttgttcattgagtattgaatgagaatttgg-agagatttggtattttatatctatgagcattatt |
32240407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 265
Target Start/End: Complemental strand, 24428749 - 24428656
Alignment:
| Q |
169 |
attcttctaatattcgttatatatcgacaattgtgagggttgaccaaataactaactaattaattactcctcaagtcacttatcaaaaaataaataa |
265 |
Q |
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||||||||| ||||| |||||||| ||||||| ||| |||||| ||||||||| |||||| || | ||||||| ||||||||||||||||||| |
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| T |
24428749 |
attcttctattattcattatatattgacaattatgaacattgaccgaataactaattaattattt---cttcaagtcgcttatcaaaaaataaataa |
24428656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 169 - 296
Target Start/End: Complemental strand, 32240348 - 32240220
Alignment:
| Q |
169 |
attcttctaatattcgttatatatcgacaatt---gtgagggttgaccaaataactaactaattaattactcctcaagtcacttatcaaaaaataaataa |
265 |
Q |
| |
|
||||||||| ||||| |||||||| ||||||| |||| |||||| ||||||||| |||||| || | ||||||| ||||||||||||||||||| |
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| T |
32240348 |
attcttctattattcattatatattgacaattattgtgaacattgaccgaataactaattaattattt---cttcaagtcgcttatcaaaaaataaataa |
32240252 |
T |
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| Q |
266 |
ggatcct-ctggtcatatttataagagcatct |
296 |
Q |
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| || ||||| |||||||||||||||||| |
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| T |
32240251 |
aatttcttctggttatatttataagagcatct |
32240220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 32240557 - 32240500
Alignment:
| Q |
28 |
ttatttctctgcaaaaatgtgttgttggttattagtatatgtaactataaaaactcatgtt |
88 |
Q |
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||||||||||||||||||||||| |||||||| ||| |||||||||| |||||| |||| |
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| T |
32240557 |
ttatttctctgcaaaaatgtgttattggttat---tatgtgtaactatacaaactcttgtt |
32240500 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1678 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold1678
Description:
Target: scaffold1678; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 175 - 37
Alignment:
| Q |
18 |
gtttaaaccattatttctctgcaaaaatgtgttgttggttattagtatatgtaactataaaaactcatgttcattgagaattgaataagaatttgggaga |
117 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||| ||||||| ||||||| ||||| |
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|
| T |
175 |
gtttaaattattatttctctgcaaaaatgtgttgttggttat---tatgtgtaactatacaaactcatgttcattgaatattgaatgagaattt-ggaga |
80 |
T |
|
| Q |
118 |
gatttggtaatttatatctttgaacattattgtattattattt |
160 |
Q |
| |
|
||||||||| ||||||||||||| ||||||| |||||||||| |
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|
| T |
79 |
gatttggtattttatatctttgagcattatttcattattattt |
37 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0786 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0786
Description:
Target: scaffold0786; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 4363 - 4435
Alignment:
| Q |
18 |
gtttaaaccattatttctctgcaaaaatgtgttgttggttattagtatatgtaactataaaaactcatgttcattg |
93 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||| |
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|
| T |
4363 |
gtttaaattattatttctctgcaaaaatgtgttgttggttat---tatgtgtaactatacaaactcatgttcattg |
4435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0390 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0390
Description:
Target: scaffold0390; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 2896 - 2968
Alignment:
| Q |
18 |
gtttaaaccattatttctctgcaaaaatgtgttgttggttattagtatatgtaactataaaaactcatgttcattg |
93 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||| |
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|
| T |
2896 |
gtttaaattattatttctctgcaaaaatgtgttgttggttat---tatgtgtaactatacaaactcatgttcattg |
2968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0390; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 15880 - 15952
Alignment:
| Q |
18 |
gtttaaaccattatttctctgcaaaaatgtgttgttggttattagtatatgtaactataaaaactcatgttcattg |
93 |
Q |
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|
||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||| |
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|
| T |
15880 |
gtttaaattattatttctctgcaaaaatgtgttgttggttat---tatgtgtaactatacaaactcatgttcattg |
15952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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