View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17991_low_2 (Length: 626)
Name: NF17991_low_2
Description: NF17991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17991_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 555; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 11 - 592
Target Start/End: Complemental strand, 44908318 - 44907728
Alignment:
| Q |
11 |
catcatcatgattatcattattaccatcaccaccatc---------catcttttgctccttttggaaatgatacacaacaggactagaaaaaccatcaag |
101 |
Q |
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| T |
44908318 |
catcatcatgattatcattattaccatcaccaccatcatctccatccatcttttgctccttttggaaattatacacaacaggactagaaaaaccatcaag |
44908219 |
T |
|
| Q |
102 |
atcaccagacaaagcaggagctactgtttttggcatggaagaccttccatttgtgagaaacattttctcttgcttagccacaacaaattttgtgttcctc |
201 |
Q |
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| T |
44908218 |
atcaccagacaaagcaggagctactgtttttggcatggaagaccttccatttgtgagaaacattttctcttgcttagccacaacaaattttgtgttcctc |
44908119 |
T |
|
| Q |
202 |
ttcattatagcactcttccatcttcttccaaatccaccattaggcctagttggcatcaccataagtgctgattcttcagtatgagtcaaagtcctaacat |
301 |
Q |
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| T |
44908118 |
ttcattatagcactcttccatcttcttccaaatccaccattaggcctagttggcatcaccataagtgctgattcttcagtatgagtcaaagtcctaacat |
44908019 |
T |
|
| Q |
302 |
aattagctaagtacttctttgtcctcttgattgcagcaacaaattttgcaactgtgtgtggactctttctcttgtcttttttagcaagcttgagaatttc |
401 |
Q |
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| T |
44908018 |
aattagctaagtacttctttgtcctcttgattgcagcaacaaattttgcaactgtgtgtggactctttctcttgtcttttttagcaagcttgagaatttc |
44907919 |
T |
|
| Q |
402 |
taatctgtgtttggctatggagattcccatgctttggagaaactcatggttgaagtaaaacatgtcttcttcttcaagctcgttttgtgcaaagacaagg |
501 |
Q |
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| T |
44907918 |
taatctgtgtttggctatggagattcccatgctttggagaaactcatggttgaagtaaaacatgtcttcttcttcaagctcgttttgtgcaaagacaagg |
44907819 |
T |
|
| Q |
502 |
ccatactcatatacaagagatggctcaagattggtttttgatagccatgaaaaccaatccatggctgttgagtaaatggaatatgtgtgaa |
592 |
Q |
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| T |
44907818 |
ccatactcatatacaagagatggctcaagattggtttttgatagccatgaaaaccaatccatggctgttgagtaaatggaatatgtgtgaa |
44907728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 386 - 457
Target Start/End: Original strand, 22537599 - 22537670
Alignment:
| Q |
386 |
caagcttgagaatttctaatctgtgtttggctatggagattcccatgctttggagaaactcatggttgaagt |
457 |
Q |
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| T |
22537599 |
caagattgagaatttctagcctgtgtttggctattgaaattcccatgctttgaagaaactcgtggttgaagt |
22537670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 376 - 565
Target Start/End: Original strand, 2051633 - 2051822
Alignment:
| Q |
376 |
tcttttttagcaagcttgagaatttctaatctgtgtttggctatggagattcccatgctttggagaaactcatggttgaagtaaaacatgtcttcttctt |
475 |
Q |
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|||||| | ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| || |
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| T |
2051633 |
tcttttcttgcaagtttgagaatttctagcctgtgtttggctatggagattcccatgctttggagaaattcatggttgaagtaaaccatgtcttcttgtt |
2051732 |
T |
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| Q |
476 |
caagctcgttttgtgcaaagacaaggccatactcatatacaagagatggctcaagattggtttttgatagccatgaaaaccaatccatgg |
565 |
Q |
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| T |
2051733 |
ctagctcattgtgtgcaaaagtgagaccatactcatacacaagagatggatcaaggtttgtttttgaaagccaagaaaaccaatccatgg |
2051822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 391 - 459
Target Start/End: Complemental strand, 48069900 - 48069832
Alignment:
| Q |
391 |
ttgagaatttctaatctgtgtttggctatggagattcccatgctttggagaaactcatggttgaagtaa |
459 |
Q |
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|||||||| |||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
48069900 |
ttgagaatctctagtctgtgtttggctattgagattcccatgctttgtagaaactcatggttgaagtaa |
48069832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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