View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17991_low_20 (Length: 394)
Name: NF17991_low_20
Description: NF17991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17991_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 7e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 12 - 231
Target Start/End: Complemental strand, 45147831 - 45147613
Alignment:
| Q |
12 |
cataggatagaaaaagggtgatcaatatcatttttctgttgtagtcaagcgagaaaatccaacatgagttttagaatgagaagtattgcctacctctttg |
111 |
Q |
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| T |
45147831 |
cataggatagaaaaagggtgatcaata-catttttctgttgtagtcaagcgagaaaatccaacatgagtcttagaatgagaagtattgcctacctctttg |
45147733 |
T |
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| Q |
112 |
ttccaattggttttgtaaagtatccccgagagcagcaaggtctggaggagaattccacatatcatacctccccaaagtccctnnnnnnnttcagaatcat |
211 |
Q |
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| T |
45147732 |
ttccaattggttttgtaaagtatccccgagagcagcaaggtctggaggagaattccacatatcatacctccccaaagtccctaaaaaaattcagaatcat |
45147633 |
T |
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| Q |
212 |
tataaagagttgttcgcttc |
231 |
Q |
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| T |
45147632 |
tagaaagagttgttcgcttc |
45147613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 258 - 375
Target Start/End: Complemental strand, 45147586 - 45147469
Alignment:
| Q |
258 |
atcttctacctataaaacagtcaatgagtctttggatagaaatgtttatcaaaaagaggcattaaagcaggaaccattcatgacattaacatttttcact |
357 |
Q |
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| T |
45147586 |
atcttctacctataaaacggtcaatgagtctttggatagaaatgtttatcaaaaagaggcattaaagcaggaaccattcatgacattaacatttttcact |
45147487 |
T |
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| Q |
358 |
caacagcaaacaagtaag |
375 |
Q |
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| T |
45147486 |
caacagcaaacaagtaag |
45147469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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