View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17991_low_21 (Length: 394)
Name: NF17991_low_21
Description: NF17991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17991_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 109 - 379
Target Start/End: Original strand, 29178430 - 29178701
Alignment:
| Q |
109 |
catttatttccgctgttttcccacaaacaaaattattactgttctaataattaagacaaaggaaaa-aagtcatgaacatttaatctaaaggattaagta |
207 |
Q |
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| T |
29178430 |
catttatttccgctgttttcccacaaacaaaattattactgttctaataattaagacaaaggaaaaaaagtcatgaacatttaatctaaaggattaagta |
29178529 |
T |
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| Q |
208 |
aactcaggataatattgttaatgaggacaattggttttaattttaactagtcatagttgacttcaacacaaaacttatttctaccttttattgatctata |
307 |
Q |
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| T |
29178530 |
aactcaggataatattgttaatgaggacaattggttttaattttaactagtcatagttgacttcaacacaaaacttatttctaccttttattgatctata |
29178629 |
T |
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| Q |
308 |
actgcacatgttcctcatcttacttaaattcacatatcatatataacaaaataaaaagtctaacacccatgt |
379 |
Q |
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| T |
29178630 |
actgcacatgttcctcatcttacttaaattcacatatcatatataacaaaataaaaagtctaacacccatgt |
29178701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 29178322 - 29178371
Alignment:
| Q |
1 |
ctgttatgggtagccaaattagaagacatctcaacaattgatggaagagg |
50 |
Q |
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| T |
29178322 |
ctgttatgggtggccaaattagaagacatctcaacaattgatggaagagg |
29178371 |
T |
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