View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17991_low_24 (Length: 384)
Name: NF17991_low_24
Description: NF17991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17991_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 147 - 368
Target Start/End: Complemental strand, 37663803 - 37663583
Alignment:
| Q |
147 |
caaccccgcatacacccaaacatgtgacatgaaatgatattcacgcatgacatgaaatgtaagagtattgaatatataatggttgcaaatttctaaggat |
246 |
Q |
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| T |
37663803 |
caaccccgcatacacccaaacatgtaacatgaaatgatattcgcacatgacataaaatgtaagagtattgaatatataatggttgcaaatttctaaggat |
37663704 |
T |
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| Q |
247 |
ttagcttggaaagtgattactgagttttagcaatttgatttgtcccaaaggtattcattacaaattatgataatatactactaatttattgtcaagatat |
346 |
Q |
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| T |
37663703 |
ttagcttggaaagtgat-actgagttttagcaatttgatttgtcccaaaggtattcattacaaattatgatgatatactactaatttattgtcaagatat |
37663605 |
T |
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| Q |
347 |
tcatctgttcctctttaaaagg |
368 |
Q |
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| T |
37663604 |
tcatctgttcctctttaaaagg |
37663583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 37663844 - 37663802
Alignment:
| Q |
24 |
aaaatcacat-ataaaagagatttataatcatatatcgtctca |
65 |
Q |
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| T |
37663844 |
aaaatcacattataaaagagatttataatcatatatcgtctca |
37663802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 105
Target Start/End: Original strand, 17651712 - 17651754
Alignment:
| Q |
63 |
tcacggaggccaaatccacctttcttaaattaatttgctcttt |
105 |
Q |
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| T |
17651712 |
tcacggaggccaaatccacctttcttaaattaatttgctcttt |
17651754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 105
Target Start/End: Original strand, 21689645 - 21689687
Alignment:
| Q |
63 |
tcacggaggccaaatccacctttcttaaattaatttgctcttt |
105 |
Q |
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| T |
21689645 |
tcacggaggccaaatccacctttcttaaattaatttgctcttt |
21689687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 63 - 101
Target Start/End: Complemental strand, 18328419 - 18328381
Alignment:
| Q |
63 |
tcacggaggccaaatccacctttcttaaattaatttgct |
101 |
Q |
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| T |
18328419 |
tcacggaggccaaatccacctttcttaaattaatttgct |
18328381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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