View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17991_low_32 (Length: 348)
Name: NF17991_low_32
Description: NF17991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17991_low_32 |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 99 - 330
Target Start/End: Complemental strand, 3350439 - 3350208
Alignment:
| Q |
99 |
ttaactaagtaaatttataatttgaatcgtctgatcttaaatcaaccgaccaaaatgattacagaaaataaatgtgtggtattattaccgcaagaaatcc |
198 |
Q |
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| T |
3350439 |
ttaacttagtaaatttataatttgaatcgtctgatcttaaatcaaccgatctaaatgattacagaatataaatgtgtggtattattactgcaagaaatcc |
3350340 |
T |
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| Q |
199 |
aaatccgtaaaagtatagatgctgaaattgaaggaaacatttgccaattttaatctgacaacagaaactacttgattctgtatcttgaagaagatccatg |
298 |
Q |
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| T |
3350339 |
aaatccgtaaaagtattgatgctcaaattgaaggaaacatttgccaattttaatctgacaacagaaactacttgattctgtatcttgaagaagatccatg |
3350240 |
T |
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| Q |
299 |
tgattccactgacaaaggaaaaacctcacttt |
330 |
Q |
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| T |
3350239 |
tgattccactgacaaaggaaatacctcacttt |
3350208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 3350558 - 3350490
Alignment:
| Q |
16 |
ataatacttattatgtgatgcggggaaataaaactcacaagaagcagatttggattatgtggaaataaa |
84 |
Q |
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|||| ||| |||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||| |
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| T |
3350558 |
ataaaactcattatgtgatgcggggaaataaaactcataagaggcggatttggattatgtggaaataaa |
3350490 |
T |
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