View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17991_low_33 (Length: 338)
Name: NF17991_low_33
Description: NF17991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17991_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 78 - 285
Target Start/End: Original strand, 49255932 - 49256139
Alignment:
| Q |
78 |
atcatttcagctttgagtggtggtcatttgagctcctagtctttctttctggtcttcttccaaatccacagcttgaaacttctgttttatccatatggta |
177 |
Q |
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| T |
49255932 |
atcatttcagctttgagtggtggtcatttgagctcctagtctttctttctggtcttcttccaaatccacagcttgaaacttctgttttatccatatggta |
49256031 |
T |
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| Q |
178 |
taactttccctagtgtttagttttacgcatagatgactttgcgtgtatgaaagttgtattgtaatggttacttatagtcaaatattgattccattcttat |
277 |
Q |
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| T |
49256032 |
taactttccctagtgtttagttttacgcatagatgactttgcgtgtatgaaagttgtattgtaatggttacttatagtcaaatactgattccattcttat |
49256131 |
T |
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| Q |
278 |
aaattagt |
285 |
Q |
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|||||||| |
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| T |
49256132 |
aaattagt |
49256139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 82 - 180
Target Start/End: Original strand, 49268906 - 49269004
Alignment:
| Q |
82 |
tttcagctttgagtggtggtcatttgagctcctagtctttctttctggtcttcttccaaatccacagcttgaaacttctgttttatccatatggtataa |
180 |
Q |
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| T |
49268906 |
tttcagccttgagtggtggtcatttgaactcctaatccttctttctggtcttctaccaaatccacagcttgaaacttcagtcttatccatatggtataa |
49269004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 49274640 - 49274577
Alignment:
| Q |
8 |
ttgctatctctctttgtgctgtctctggcttcagccgttcagcgttcttgcaagtcttcttttg |
71 |
Q |
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| T |
49274640 |
ttgctatctctctttgtgctgtctctggcttcagccgttcagcgttcttgcaagtcttcttttg |
49274577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 115
Target Start/End: Original strand, 49273704 - 49273738
Alignment:
| Q |
81 |
atttcagctttgagtggtggtcatttgagctccta |
115 |
Q |
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| T |
49273704 |
atttcagctttgagtggtggtcatttgagctccta |
49273738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 49254925 - 49254965
Alignment:
| Q |
1 |
acagctattgctatctctctttgtgctgtctctggcttcag |
41 |
Q |
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| T |
49254925 |
acagctattgctatctctctctgtgttgtctctggcttcag |
49254965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 49267187 - 49267227
Alignment:
| Q |
1 |
acagctattgctatctctctttgtgctgtctctggcttcag |
41 |
Q |
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| T |
49267187 |
acagctattgctatctctctctgtggtgtctctggcttcag |
49267227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 49271593 - 49271633
Alignment:
| Q |
1 |
acagctattgctatctctctttgtgctgtctctggcttcag |
41 |
Q |
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| T |
49271593 |
acagctattgctatctctctctatggtgtctctggcttcag |
49271633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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