View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17991_low_35 (Length: 335)
Name: NF17991_low_35
Description: NF17991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17991_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 11 - 317
Target Start/End: Complemental strand, 238761 - 238455
Alignment:
| Q |
11 |
caaaggtaaaagccaaagtgttgtgactaatggccatgtttttgacttcagcaacaacaacaacaactacacaaaatattagagggtgcagtgcaggnnn |
110 |
Q |
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| T |
238761 |
caaaggtaaaagccaaagtgttgtgactaatggccatgtttttgacttcagcaacaacaacaacaactacacaaaatattagagggtgcagtgcagggag |
238662 |
T |
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| Q |
111 |
nnnnnnnnnnnnaactatattcttccaaactcaaaccttaaaacacgtgcatgcagttattattgatgctgatggtgaggagggtccttcacaatcccac |
210 |
Q |
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| T |
238661 |
agagaggagagaaactatattcttccaaactcaaaccctaaaacacgtgcatgcagttattattgatgctgatggtgaggagggtccttcacaatcccac |
238562 |
T |
|
| Q |
211 |
tctatatatacacacttcctaagagtaagtaattaaaaattacttagaaaggatcttcacaataaattatttattgcaaactggctcccatgagaaaatg |
310 |
Q |
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| T |
238561 |
tctatatatacacacttcctaagagtaagtaattaaaaattacttagaaaggatcttcacaataaattatttattgcaaactggctcccatgagaaaatg |
238462 |
T |
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| Q |
311 |
tacgtac |
317 |
Q |
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|| |||| |
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| T |
238461 |
taagtac |
238455 |
T |
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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 22677432 - 22677376
Alignment:
| Q |
171 |
tattgatgctgatggtgaggagggtccttcacaatcccactctatatatacacactt |
227 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22677432 |
tattgatggtgatggtgaggagggtccttcacaatcccactctatatatacacactt |
22677376 |
T |
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